Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00702 and MIT1002_00703 are separated by 145 nucleotides MIT1002_00703 and MIT1002_00704 overlap by 62 nucleotides MIT1002_00704 and MIT1002_00705 are separated by 33 nucleotides MIT1002_00705 and MIT1002_00706 are separated by 4 nucleotides
MIT1002_00702: MIT1002_00702 - Anthranilate phosphoribosyltransferase, at 769,833 to 770,819
_00702
MIT1002_00703: MIT1002_00703 - hypothetical protein, at 770,965 to 771,612
_00703
MIT1002_00704: MIT1002_00704 - hypothetical protein, at 771,551 to 771,889
_00704
MIT1002_00705: MIT1002_00705 - Trifunctional nucleotide phosphoesterase protein YfkN precursor, at 771,923 to 772,483
_00705
MIT1002_00706: MIT1002_00706 - Bacteriophytochrome cph2, at 772,488 to 774,086
_00706
Position (kb) 771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.598 kb on - strand, within MIT1002_00702 at 770.655 kb on + strand, within MIT1002_00702 at 770.694 kb on + strand, within MIT1002_00702 at 770.694 kb on + strand, within MIT1002_00702 at 770.703 kb on + strand, within MIT1002_00702 at 770.725 kb on + strand at 770.780 kb on + strand at 770.788 kb on - strand at 770.917 kb on - strand at 771.022 kb on + strand at 771.029 kb on - strand at 771.029 kb on - strand at 771.060 kb on - strand, within MIT1002_00703 at 771.079 kb on - strand, within MIT1002_00703 at 771.112 kb on + strand, within MIT1002_00703 at 771.141 kb on - strand, within MIT1002_00703 at 771.219 kb on + strand, within MIT1002_00703 at 771.222 kb on - strand, within MIT1002_00703 at 771.227 kb on - strand, within MIT1002_00703 at 771.264 kb on + strand, within MIT1002_00703 at 771.376 kb on - strand, within MIT1002_00703 at 771.583 kb on + strand at 771.583 kb on + strand at 771.588 kb on + strand at 771.596 kb on - strand at 771.596 kb on - strand at 771.670 kb on - strand, within MIT1002_00704 at 771.681 kb on - strand, within MIT1002_00704 at 771.708 kb on + strand, within MIT1002_00704 at 771.732 kb on - strand, within MIT1002_00704 at 771.803 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.928 kb on - strand at 771.937 kb on + strand at 771.974 kb on - strand at 772.022 kb on - strand, within MIT1002_00705 at 772.116 kb on - strand, within MIT1002_00705 at 772.137 kb on - strand, within MIT1002_00705 at 772.195 kb on + strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.255 kb on + strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.367 kb on + strand, within MIT1002_00705 at 772.438 kb on + strand at 772.530 kb on - strand at 772.629 kb on + strand at 772.761 kb on - strand, within MIT1002_00706 at 772.800 kb on + strand, within MIT1002_00706 at 772.813 kb on - strand, within MIT1002_00706
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 770,598 - MIT1002_00702 0.78 +0.2 770,655 + MIT1002_00702 0.83 +0.6 770,694 + MIT1002_00702 0.87 +1.2 770,694 + MIT1002_00702 0.87 +0.9 770,703 + MIT1002_00702 0.88 +0.3 770,725 + -1.1 770,780 + -0.6 770,788 - -2.0 770,917 - -0.3 771,022 + +1.0 771,029 - +0.0 771,029 - -1.4 771,060 - MIT1002_00703 0.15 -0.7 771,079 - MIT1002_00703 0.18 +0.1 771,112 + MIT1002_00703 0.23 -1.3 771,141 - MIT1002_00703 0.27 +0.3 771,219 + MIT1002_00703 0.39 +0.5 771,222 - MIT1002_00703 0.40 -1.4 771,227 - MIT1002_00703 0.40 -0.7 771,264 + MIT1002_00703 0.46 +0.3 771,376 - MIT1002_00703 0.63 -0.6 771,583 + -0.3 771,583 + -0.9 771,588 + -0.6 771,596 - -0.5 771,596 - -1.7 771,670 - MIT1002_00704 0.35 +0.2 771,681 - MIT1002_00704 0.38 +0.7 771,708 + MIT1002_00704 0.46 -2.1 771,732 - MIT1002_00704 0.53 -1.3 771,803 + MIT1002_00704 0.74 +0.0 771,844 + MIT1002_00704 0.86 -2.8 771,844 + MIT1002_00704 0.86 +0.4 771,928 - +0.7 771,937 + -1.3 771,974 - -0.5 772,022 - MIT1002_00705 0.18 -0.9 772,116 - MIT1002_00705 0.34 -0.1 772,137 - MIT1002_00705 0.38 -0.2 772,195 + MIT1002_00705 0.48 -2.4 772,209 - MIT1002_00705 0.51 +0.6 772,209 - MIT1002_00705 0.51 -0.8 772,255 + MIT1002_00705 0.59 +2.0 772,340 - MIT1002_00705 0.74 -0.2 772,340 - MIT1002_00705 0.74 +1.1 772,367 + MIT1002_00705 0.79 +0.1 772,438 + +0.9 772,530 - +1.1 772,629 + -0.4 772,761 - MIT1002_00706 0.17 +0.4 772,800 + MIT1002_00706 0.20 -0.2 772,813 - MIT1002_00706 0.20 +0.7
Or see this region's nucleotide sequence