Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00659

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00657 and MIT1002_00658 are separated by 149 nucleotidesMIT1002_00658 and MIT1002_00659 are separated by 49 nucleotidesMIT1002_00659 and MIT1002_00660 are separated by 108 nucleotides MIT1002_00657: MIT1002_00657 - hypothetical protein, at 713,816 to 714,703 _00657 MIT1002_00658: MIT1002_00658 - Ribosomal large subunit pseudouridine synthase A, at 714,853 to 715,569 _00658 MIT1002_00659: MIT1002_00659 - RNA polymerase-associated protein RapA, at 715,619 to 718,480 _00659 MIT1002_00660: MIT1002_00660 - hypothetical protein, at 718,589 to 719,983 _00660 Position (kb) 715 716 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 714.622 kb on - strandat 714.645 kb on + strandat 714.645 kb on + strandat 714.653 kb on - strandat 714.653 kb on - strandat 714.678 kb on + strandat 714.678 kb on + strandat 714.685 kb on + strandat 714.711 kb on + strandat 714.728 kb on + strandat 714.780 kb on + strandat 714.788 kb on - strandat 714.970 kb on - strand, within MIT1002_00658at 714.996 kb on - strand, within MIT1002_00658at 715.068 kb on - strand, within MIT1002_00658at 715.098 kb on + strand, within MIT1002_00658at 715.137 kb on + strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.226 kb on + strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.235 kb on - strand, within MIT1002_00658at 715.236 kb on - strand, within MIT1002_00658at 715.251 kb on - strand, within MIT1002_00658at 715.366 kb on + strand, within MIT1002_00658at 715.380 kb on - strand, within MIT1002_00658at 715.381 kb on + strand, within MIT1002_00658at 715.383 kb on + strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.391 kb on - strand, within MIT1002_00658at 715.440 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.448 kb on - strand, within MIT1002_00658at 715.479 kb on + strand, within MIT1002_00658at 715.486 kb on - strand, within MIT1002_00658at 715.498 kb on + strandat 715.506 kb on - strandat 715.529 kb on + strandat 715.591 kb on - strandat 715.609 kb on - strandat 715.618 kb on - strandat 715.662 kb on + strandat 715.753 kb on - strandat 715.755 kb on - strandat 715.798 kb on - strandat 715.799 kb on + strandat 715.974 kb on - strand, within MIT1002_00659at 716.139 kb on - strand, within MIT1002_00659at 716.224 kb on + strand, within MIT1002_00659at 716.240 kb on - strand, within MIT1002_00659at 716.328 kb on - strand, within MIT1002_00659at 716.385 kb on - strand, within MIT1002_00659at 716.411 kb on + strand, within MIT1002_00659at 716.411 kb on + strand, within MIT1002_00659at 716.419 kb on - strand, within MIT1002_00659at 716.419 kb on - strand, within MIT1002_00659at 716.424 kb on + strand, within MIT1002_00659at 716.454 kb on + strand, within MIT1002_00659at 716.532 kb on + strand, within MIT1002_00659at 716.534 kb on + strand, within MIT1002_00659at 716.542 kb on - strand, within MIT1002_00659at 716.555 kb on - strand, within MIT1002_00659at 716.555 kb on - strand, within MIT1002_00659at 716.562 kb on - strand, within MIT1002_00659at 716.567 kb on - strand, within MIT1002_00659at 716.678 kb on + strand, within MIT1002_00659at 716.701 kb on - strand, within MIT1002_00659at 716.706 kb on - strand, within MIT1002_00659at 716.737 kb on + strand, within MIT1002_00659at 716.737 kb on + strand, within MIT1002_00659at 716.745 kb on - strand, within MIT1002_00659at 716.789 kb on + strand, within MIT1002_00659at 716.789 kb on + strand, within MIT1002_00659at 716.885 kb on + strand, within MIT1002_00659at 716.885 kb on + strand, within MIT1002_00659at 716.891 kb on - strand, within MIT1002_00659at 716.893 kb on - strand, within MIT1002_00659at 716.893 kb on - strand, within MIT1002_00659at 716.893 kb on - strand, within MIT1002_00659at 716.893 kb on - strand, within MIT1002_00659at 716.900 kb on + strand, within MIT1002_00659at 716.937 kb on + strand, within MIT1002_00659at 716.941 kb on + strand, within MIT1002_00659at 716.956 kb on - strand, within MIT1002_00659at 716.956 kb on - strand, within MIT1002_00659at 716.958 kb on + strand, within MIT1002_00659at 716.958 kb on + strand, within MIT1002_00659at 716.966 kb on - strand, within MIT1002_00659at 716.966 kb on - strand, within MIT1002_00659at 716.966 kb on - strand, within MIT1002_00659at 716.966 kb on - strand, within MIT1002_00659at 716.966 kb on - strand, within MIT1002_00659at 716.995 kb on + strand, within MIT1002_00659at 717.003 kb on - strand, within MIT1002_00659at 717.037 kb on + strand, within MIT1002_00659at 717.037 kb on + strand, within MIT1002_00659at 717.037 kb on + strand, within MIT1002_00659at 717.045 kb on - strand, within MIT1002_00659at 717.048 kb on + strand, within MIT1002_00659at 717.061 kb on - strand, within MIT1002_00659at 717.061 kb on - strand, within MIT1002_00659at 717.135 kb on + strand, within MIT1002_00659at 717.214 kb on + strand, within MIT1002_00659at 717.216 kb on - strand, within MIT1002_00659at 717.217 kb on - strand, within MIT1002_00659at 717.441 kb on - strand, within MIT1002_00659at 717.510 kb on - strand, within MIT1002_00659at 717.543 kb on - strand, within MIT1002_00659at 717.545 kb on + strand, within MIT1002_00659at 717.566 kb on - strand, within MIT1002_00659at 717.592 kb on - strand, within MIT1002_00659at 717.592 kb on - strand, within MIT1002_00659at 717.619 kb on - strand, within MIT1002_00659at 717.726 kb on - strand, within MIT1002_00659at 717.745 kb on - strand, within MIT1002_00659at 717.752 kb on + strand, within MIT1002_00659at 717.755 kb on + strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.979 kb on + strand, within MIT1002_00659at 718.014 kb on - strand, within MIT1002_00659at 718.041 kb on - strand, within MIT1002_00659at 718.099 kb on + strand, within MIT1002_00659at 718.106 kb on - strand, within MIT1002_00659at 718.106 kb on - strand, within MIT1002_00659at 718.107 kb on - strand, within MIT1002_00659at 718.107 kb on - strand, within MIT1002_00659at 718.180 kb on - strand, within MIT1002_00659at 718.221 kb on - strandat 718.373 kb on - strandat 718.375 kb on - strandat 718.408 kb on + strandat 718.408 kb on + strandat 718.410 kb on + strandat 718.436 kb on + strandat 718.509 kb on + strandat 718.519 kb on - strandat 718.547 kb on + strandat 718.585 kb on - strandat 718.596 kb on + strandat 718.604 kb on - strandat 718.655 kb on + strandat 718.688 kb on - strandat 718.698 kb on - strandat 718.708 kb on - strandat 718.709 kb on - strandat 718.767 kb on + strand, within MIT1002_00660at 718.823 kb on + strand, within MIT1002_00660at 718.908 kb on + strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.913 kb on + strand, within MIT1002_00660at 719.015 kb on - strand, within MIT1002_00660at 719.021 kb on + strand, within MIT1002_00660at 719.024 kb on - strand, within MIT1002_00660at 719.050 kb on + strand, within MIT1002_00660at 719.063 kb on - strand, within MIT1002_00660at 719.128 kb on - strand, within MIT1002_00660at 719.137 kb on + strand, within MIT1002_00660at 719.187 kb on - strand, within MIT1002_00660at 719.189 kb on + strand, within MIT1002_00660at 719.190 kb on - strand, within MIT1002_00660at 719.197 kb on - strand, within MIT1002_00660at 719.322 kb on - strand, within MIT1002_00660at 719.364 kb on + strand, within MIT1002_00660at 719.387 kb on + strand, within MIT1002_00660at 719.418 kb on + strand, within MIT1002_00660at 719.418 kb on + strand, within MIT1002_00660at 719.450 kb on + strand, within MIT1002_00660

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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714,622 - +0.9
714,645 + -0.9
714,645 + +0.1
714,653 - +0.9
714,653 - -0.5
714,678 + -0.7
714,678 + -2.6
714,685 + +0.4
714,711 + +0.6
714,728 + -1.6
714,780 + +0.2
714,788 - -1.1
714,970 - MIT1002_00658 0.16 +0.4
714,996 - MIT1002_00658 0.20 -0.1
715,068 - MIT1002_00658 0.30 -2.4
715,098 + MIT1002_00658 0.34 +0.1
715,137 + MIT1002_00658 0.40 -1.0
715,199 - MIT1002_00658 0.48 -0.5
715,199 - MIT1002_00658 0.48 -2.1
715,226 + MIT1002_00658 0.52 -2.6
715,234 - MIT1002_00658 0.53 -0.4
715,234 - MIT1002_00658 0.53 +0.2
715,235 - MIT1002_00658 0.53 +0.4
715,236 - MIT1002_00658 0.53 -1.6
715,251 - MIT1002_00658 0.56 +0.5
715,366 + MIT1002_00658 0.72 +0.7
715,380 - MIT1002_00658 0.74 +0.5
715,381 + MIT1002_00658 0.74 +0.7
715,383 + MIT1002_00658 0.74 -0.3
715,389 - MIT1002_00658 0.75 +0.2
715,389 - MIT1002_00658 0.75 -0.3
715,391 - MIT1002_00658 0.75 -3.0
715,440 + MIT1002_00658 0.82 -2.1
715,441 + MIT1002_00658 0.82 +1.4
715,441 + MIT1002_00658 0.82 +0.4
715,448 - MIT1002_00658 0.83 +0.4
715,479 + MIT1002_00658 0.87 +0.1
715,486 - MIT1002_00658 0.88 +0.1
715,498 + -0.3
715,506 - -0.0
715,529 + -2.0
715,591 - -0.1
715,609 - +0.3
715,618 - +0.5
715,662 + -0.4
715,753 - -0.4
715,755 - -3.2
715,798 - -0.3
715,799 + -1.2
715,974 - MIT1002_00659 0.12 +0.1
716,139 - MIT1002_00659 0.18 -0.9
716,224 + MIT1002_00659 0.21 +0.2
716,240 - MIT1002_00659 0.22 -2.3
716,328 - MIT1002_00659 0.25 +1.0
716,385 - MIT1002_00659 0.27 +1.0
716,411 + MIT1002_00659 0.28 -0.6
716,411 + MIT1002_00659 0.28 +0.8
716,419 - MIT1002_00659 0.28 -3.0
716,419 - MIT1002_00659 0.28 -0.6
716,424 + MIT1002_00659 0.28 -0.1
716,454 + MIT1002_00659 0.29 -0.7
716,532 + MIT1002_00659 0.32 +0.4
716,534 + MIT1002_00659 0.32 +1.1
716,542 - MIT1002_00659 0.32 -0.3
716,555 - MIT1002_00659 0.33 +0.7
716,555 - MIT1002_00659 0.33 -0.5
716,562 - MIT1002_00659 0.33 -1.0
716,567 - MIT1002_00659 0.33 -1.2
716,678 + MIT1002_00659 0.37 +0.9
716,701 - MIT1002_00659 0.38 +0.4
716,706 - MIT1002_00659 0.38 +0.6
716,737 + MIT1002_00659 0.39 -0.4
716,737 + MIT1002_00659 0.39 -1.0
716,745 - MIT1002_00659 0.39 -0.9
716,789 + MIT1002_00659 0.41 +0.2
716,789 + MIT1002_00659 0.41 -1.5
716,885 + MIT1002_00659 0.44 -0.5
716,885 + MIT1002_00659 0.44 +0.3
716,891 - MIT1002_00659 0.44 -1.7
716,893 - MIT1002_00659 0.45 +0.6
716,893 - MIT1002_00659 0.45 -2.6
716,893 - MIT1002_00659 0.45 +0.6
716,893 - MIT1002_00659 0.45 -1.0
716,900 + MIT1002_00659 0.45 -2.8
716,937 + MIT1002_00659 0.46 -0.4
716,941 + MIT1002_00659 0.46 -1.2
716,956 - MIT1002_00659 0.47 +0.8
716,956 - MIT1002_00659 0.47 -0.4
716,958 + MIT1002_00659 0.47 -1.7
716,958 + MIT1002_00659 0.47 -0.1
716,966 - MIT1002_00659 0.47 +0.5
716,966 - MIT1002_00659 0.47 +0.3
716,966 - MIT1002_00659 0.47 +0.1
716,966 - MIT1002_00659 0.47 +0.1
716,966 - MIT1002_00659 0.47 -0.8
716,995 + MIT1002_00659 0.48 +1.7
717,003 - MIT1002_00659 0.48 -0.4
717,037 + MIT1002_00659 0.50 -0.3
717,037 + MIT1002_00659 0.50 -0.5
717,037 + MIT1002_00659 0.50 -1.0
717,045 - MIT1002_00659 0.50 -0.0
717,048 + MIT1002_00659 0.50 -1.5
717,061 - MIT1002_00659 0.50 -0.0
717,061 - MIT1002_00659 0.50 -1.4
717,135 + MIT1002_00659 0.53 +0.7
717,214 + MIT1002_00659 0.56 -0.5
717,216 - MIT1002_00659 0.56 -0.4
717,217 - MIT1002_00659 0.56 +0.7
717,441 - MIT1002_00659 0.64 +0.9
717,510 - MIT1002_00659 0.66 -1.4
717,543 - MIT1002_00659 0.67 +1.9
717,545 + MIT1002_00659 0.67 -0.4
717,566 - MIT1002_00659 0.68 -0.6
717,592 - MIT1002_00659 0.69 +1.2
717,592 - MIT1002_00659 0.69 -0.2
717,619 - MIT1002_00659 0.70 +0.6
717,726 - MIT1002_00659 0.74 +0.0
717,745 - MIT1002_00659 0.74 +0.1
717,752 + MIT1002_00659 0.75 +0.5
717,755 + MIT1002_00659 0.75 -0.2
717,890 - MIT1002_00659 0.79 -1.0
717,890 - MIT1002_00659 0.79 +1.6
717,890 - MIT1002_00659 0.79 -3.5
717,890 - MIT1002_00659 0.79 +0.5
717,890 - MIT1002_00659 0.79 +0.1
717,890 - MIT1002_00659 0.79 -0.5
717,979 + MIT1002_00659 0.82 -1.0
718,014 - MIT1002_00659 0.84 -3.6
718,041 - MIT1002_00659 0.85 +1.0
718,099 + MIT1002_00659 0.87 -0.2
718,106 - MIT1002_00659 0.87 +0.1
718,106 - MIT1002_00659 0.87 -1.0
718,107 - MIT1002_00659 0.87 +0.2
718,107 - MIT1002_00659 0.87 -0.2
718,180 - MIT1002_00659 0.89 -0.3
718,221 - +1.7
718,373 - -1.1
718,375 - -0.7
718,408 + +1.1
718,408 + -0.7
718,410 + -0.8
718,436 + -1.8
718,509 + +2.1
718,519 - +0.5
718,547 + +1.2
718,585 - -0.3
718,596 + +0.2
718,604 - -1.8
718,655 + +0.3
718,688 - -0.1
718,698 - -0.0
718,708 - +0.3
718,709 - +0.6
718,767 + MIT1002_00660 0.13 +0.2
718,823 + MIT1002_00660 0.17 -1.8
718,908 + MIT1002_00660 0.23 +0.1
718,911 - MIT1002_00660 0.23 +0.2
718,911 - MIT1002_00660 0.23 +0.4
718,911 - MIT1002_00660 0.23 -1.0
718,911 - MIT1002_00660 0.23 +0.2
718,913 + MIT1002_00660 0.23 -3.5
719,015 - MIT1002_00660 0.31 -0.3
719,021 + MIT1002_00660 0.31 -0.7
719,024 - MIT1002_00660 0.31 +1.1
719,050 + MIT1002_00660 0.33 +0.5
719,063 - MIT1002_00660 0.34 +0.8
719,128 - MIT1002_00660 0.39 -0.5
719,137 + MIT1002_00660 0.39 -0.5
719,187 - MIT1002_00660 0.43 -0.8
719,189 + MIT1002_00660 0.43 +2.2
719,190 - MIT1002_00660 0.43 -0.8
719,197 - MIT1002_00660 0.44 -1.4
719,322 - MIT1002_00660 0.53 +0.2
719,364 + MIT1002_00660 0.56 +0.4
719,387 + MIT1002_00660 0.57 -0.3
719,418 + MIT1002_00660 0.59 +1.8
719,418 + MIT1002_00660 0.59 -0.3
719,450 + MIT1002_00660 0.62 -1.3

Or see this region's nucleotide sequence