Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00479 and MIT1002_00480 are separated by 152 nucleotides MIT1002_00480 and MIT1002_00481 are separated by 115 nucleotides MIT1002_00481 and MIT1002_00482 are separated by 1 nucleotides
MIT1002_00479: MIT1002_00479 - lysophospholipase L2, at 523,483 to 524,460
_00479
MIT1002_00480: MIT1002_00480 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 524,613 to 525,077
_00480
MIT1002_00481: MIT1002_00481 - Macrolide-specific efflux protein MacA precursor, at 525,193 to 526,428
_00481
MIT1002_00482: MIT1002_00482 - Macrolide export ATP-binding/permease protein MacB, at 526,430 to 528,400
_00482
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.262 kb on + strand, within MIT1002_00479 at 524.280 kb on - strand, within MIT1002_00479 at 524.304 kb on - strand, within MIT1002_00479 at 524.419 kb on - strand at 524.524 kb on + strand at 524.538 kb on + strand at 524.538 kb on + strand at 524.546 kb on - strand at 524.590 kb on + strand at 524.622 kb on + strand at 524.671 kb on - strand, within MIT1002_00480 at 524.754 kb on + strand, within MIT1002_00480 at 524.762 kb on - strand, within MIT1002_00480 at 524.818 kb on + strand, within MIT1002_00480 at 524.870 kb on - strand, within MIT1002_00480 at 524.870 kb on - strand, within MIT1002_00480 at 524.949 kb on - strand, within MIT1002_00480 at 524.951 kb on - strand, within MIT1002_00480 at 524.956 kb on + strand, within MIT1002_00480 at 524.956 kb on + strand, within MIT1002_00480 at 524.956 kb on + strand, within MIT1002_00480 at 524.956 kb on + strand, within MIT1002_00480 at 524.961 kb on + strand, within MIT1002_00480 at 524.964 kb on - strand, within MIT1002_00480 at 525.256 kb on - strand at 525.259 kb on + strand at 525.266 kb on - strand at 525.280 kb on - strand at 525.306 kb on + strand at 525.325 kb on + strand, within MIT1002_00481 at 525.327 kb on + strand, within MIT1002_00481 at 525.333 kb on - strand, within MIT1002_00481 at 525.335 kb on - strand, within MIT1002_00481 at 525.335 kb on - strand, within MIT1002_00481 at 525.335 kb on - strand, within MIT1002_00481 at 525.404 kb on + strand, within MIT1002_00481 at 525.404 kb on + strand, within MIT1002_00481 at 525.409 kb on + strand, within MIT1002_00481 at 525.410 kb on - strand, within MIT1002_00481 at 525.414 kb on + strand, within MIT1002_00481 at 525.422 kb on - strand, within MIT1002_00481 at 525.439 kb on - strand, within MIT1002_00481 at 525.439 kb on - strand, within MIT1002_00481 at 525.458 kb on - strand, within MIT1002_00481 at 525.458 kb on - strand, within MIT1002_00481 at 525.458 kb on - strand, within MIT1002_00481 at 525.458 kb on - strand, within MIT1002_00481 at 525.484 kb on - strand, within MIT1002_00481 at 525.550 kb on + strand, within MIT1002_00481 at 525.553 kb on - strand, within MIT1002_00481 at 525.558 kb on - strand, within MIT1002_00481 at 525.558 kb on - strand, within MIT1002_00481 at 525.568 kb on + strand, within MIT1002_00481 at 525.568 kb on + strand, within MIT1002_00481 at 525.568 kb on + strand, within MIT1002_00481 at 525.576 kb on - strand, within MIT1002_00481 at 525.576 kb on - strand, within MIT1002_00481 at 525.576 kb on - strand, within MIT1002_00481 at 525.581 kb on + strand, within MIT1002_00481 at 525.674 kb on + strand, within MIT1002_00481 at 525.685 kb on + strand, within MIT1002_00481 at 525.686 kb on - strand, within MIT1002_00481 at 525.695 kb on + strand, within MIT1002_00481 at 525.706 kb on - strand, within MIT1002_00481 at 525.745 kb on - strand, within MIT1002_00481 at 525.747 kb on + strand, within MIT1002_00481 at 525.747 kb on + strand, within MIT1002_00481 at 525.747 kb on + strand, within MIT1002_00481 at 525.747 kb on + strand, within MIT1002_00481 at 525.747 kb on + strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.755 kb on - strand, within MIT1002_00481 at 525.797 kb on - strand, within MIT1002_00481 at 525.797 kb on - strand, within MIT1002_00481 at 525.836 kb on + strand, within MIT1002_00481 at 525.844 kb on - strand, within MIT1002_00481 at 525.889 kb on - strand, within MIT1002_00481 at 525.934 kb on - strand, within MIT1002_00481 at 525.944 kb on - strand, within MIT1002_00481 at 525.944 kb on - strand, within MIT1002_00481 at 525.974 kb on - strand, within MIT1002_00481 at 526.066 kb on + strand, within MIT1002_00481 at 526.066 kb on + strand, within MIT1002_00481 at 526.066 kb on + strand, within MIT1002_00481 at 526.074 kb on - strand, within MIT1002_00481 at 526.074 kb on - strand, within MIT1002_00481 at 526.074 kb on - strand, within MIT1002_00481 at 526.155 kb on + strand, within MIT1002_00481 at 526.155 kb on + strand, within MIT1002_00481 at 526.228 kb on - strand, within MIT1002_00481 at 526.232 kb on + strand, within MIT1002_00481 at 526.305 kb on + strand at 526.315 kb on + strand at 526.371 kb on - strand at 526.371 kb on - strand at 526.375 kb on + strand at 526.444 kb on + strand at 526.479 kb on + strand at 526.479 kb on + strand at 526.479 kb on + strand at 526.487 kb on - strand at 526.487 kb on - strand at 526.487 kb on - strand at 526.487 kb on - strand at 526.487 kb on - strand at 526.591 kb on - strand at 526.591 kb on - strand at 526.591 kb on - strand at 526.591 kb on - strand at 526.601 kb on - strand at 526.602 kb on + strand at 526.610 kb on - strand at 526.653 kb on + strand, within MIT1002_00482 at 526.661 kb on - strand, within MIT1002_00482 at 526.663 kb on + strand, within MIT1002_00482 at 526.671 kb on - strand, within MIT1002_00482 at 526.685 kb on + strand, within MIT1002_00482 at 526.765 kb on - strand, within MIT1002_00482 at 526.858 kb on + strand, within MIT1002_00482 at 526.866 kb on - strand, within MIT1002_00482 at 526.869 kb on + strand, within MIT1002_00482 at 526.869 kb on + strand, within MIT1002_00482 at 526.877 kb on - strand, within MIT1002_00482 at 526.877 kb on - strand, within MIT1002_00482 at 526.962 kb on + strand, within MIT1002_00482 at 526.970 kb on - strand, within MIT1002_00482 at 527.003 kb on + strand, within MIT1002_00482 at 527.013 kb on + strand, within MIT1002_00482 at 527.040 kb on - strand, within MIT1002_00482 at 527.061 kb on + strand, within MIT1002_00482 at 527.061 kb on + strand, within MIT1002_00482 at 527.099 kb on + strand, within MIT1002_00482 at 527.122 kb on + strand, within MIT1002_00482 at 527.132 kb on + strand, within MIT1002_00482 at 527.140 kb on - strand, within MIT1002_00482 at 527.189 kb on - strand, within MIT1002_00482 at 527.189 kb on - strand, within MIT1002_00482 at 527.193 kb on + strand, within MIT1002_00482 at 527.239 kb on + strand, within MIT1002_00482 at 527.252 kb on - strand, within MIT1002_00482 at 527.357 kb on + strand, within MIT1002_00482 at 527.357 kb on + strand, within MIT1002_00482 at 527.361 kb on - strand, within MIT1002_00482 at 527.403 kb on + strand, within MIT1002_00482 at 527.427 kb on + strand, within MIT1002_00482
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 524,262 + MIT1002_00479 0.80 +0.3 524,280 - MIT1002_00479 0.81 +0.6 524,304 - MIT1002_00479 0.84 +1.0 524,419 - +0.6 524,524 + +0.4 524,538 + -1.0 524,538 + +0.4 524,546 - -0.2 524,590 + -0.6 524,622 + +0.3 524,671 - MIT1002_00480 0.12 +0.0 524,754 + MIT1002_00480 0.30 +0.2 524,762 - MIT1002_00480 0.32 +1.1 524,818 + MIT1002_00480 0.44 +0.3 524,870 - MIT1002_00480 0.55 -0.7 524,870 - MIT1002_00480 0.55 -2.3 524,949 - MIT1002_00480 0.72 +0.1 524,951 - MIT1002_00480 0.73 +1.3 524,956 + MIT1002_00480 0.74 +0.5 524,956 + MIT1002_00480 0.74 +2.3 524,956 + MIT1002_00480 0.74 +0.8 524,956 + MIT1002_00480 0.74 -0.9 524,961 + MIT1002_00480 0.75 +0.7 524,964 - MIT1002_00480 0.75 -0.2 525,256 - +0.7 525,259 + +1.0 525,266 - +1.2 525,280 - +0.4 525,306 + +0.8 525,325 + MIT1002_00481 0.11 +1.3 525,327 + MIT1002_00481 0.11 +0.9 525,333 - MIT1002_00481 0.11 +0.7 525,335 - MIT1002_00481 0.11 +0.3 525,335 - MIT1002_00481 0.11 -0.5 525,335 - MIT1002_00481 0.11 +0.9 525,404 + MIT1002_00481 0.17 -1.0 525,404 + MIT1002_00481 0.17 -0.2 525,409 + MIT1002_00481 0.17 +0.3 525,410 - MIT1002_00481 0.18 +0.5 525,414 + MIT1002_00481 0.18 -0.4 525,422 - MIT1002_00481 0.19 -0.5 525,439 - MIT1002_00481 0.20 +2.0 525,439 - MIT1002_00481 0.20 -0.3 525,458 - MIT1002_00481 0.21 -0.5 525,458 - MIT1002_00481 0.21 -0.7 525,458 - MIT1002_00481 0.21 -1.0 525,458 - MIT1002_00481 0.21 -0.0 525,484 - MIT1002_00481 0.24 +1.1 525,550 + MIT1002_00481 0.29 -1.1 525,553 - MIT1002_00481 0.29 +0.1 525,558 - MIT1002_00481 0.30 -1.6 525,558 - MIT1002_00481 0.30 +0.1 525,568 + MIT1002_00481 0.30 -0.3 525,568 + MIT1002_00481 0.30 +0.2 525,568 + MIT1002_00481 0.30 -1.5 525,576 - MIT1002_00481 0.31 -0.1 525,576 - MIT1002_00481 0.31 -1.2 525,576 - MIT1002_00481 0.31 +0.2 525,581 + MIT1002_00481 0.31 -0.5 525,674 + MIT1002_00481 0.39 -0.3 525,685 + MIT1002_00481 0.40 -0.1 525,686 - MIT1002_00481 0.40 +1.2 525,695 + MIT1002_00481 0.41 +0.1 525,706 - MIT1002_00481 0.42 -3.1 525,745 - MIT1002_00481 0.45 +0.8 525,747 + MIT1002_00481 0.45 +1.2 525,747 + MIT1002_00481 0.45 -0.2 525,747 + MIT1002_00481 0.45 +0.0 525,747 + MIT1002_00481 0.45 +0.2 525,747 + MIT1002_00481 0.45 -0.5 525,755 - MIT1002_00481 0.45 -0.4 525,755 - MIT1002_00481 0.45 -1.0 525,755 - MIT1002_00481 0.45 +0.8 525,755 - MIT1002_00481 0.45 -0.1 525,755 - MIT1002_00481 0.45 -0.5 525,755 - MIT1002_00481 0.45 -0.9 525,797 - MIT1002_00481 0.49 -0.5 525,797 - MIT1002_00481 0.49 +0.4 525,836 + MIT1002_00481 0.52 -0.7 525,844 - MIT1002_00481 0.53 +0.2 525,889 - MIT1002_00481 0.56 -1.0 525,934 - MIT1002_00481 0.60 +2.1 525,944 - MIT1002_00481 0.61 +0.4 525,944 - MIT1002_00481 0.61 -0.2 525,974 - MIT1002_00481 0.63 +0.4 526,066 + MIT1002_00481 0.71 -0.2 526,066 + MIT1002_00481 0.71 +0.0 526,066 + MIT1002_00481 0.71 -0.5 526,074 - MIT1002_00481 0.71 +0.7 526,074 - MIT1002_00481 0.71 -0.6 526,074 - MIT1002_00481 0.71 -0.1 526,155 + MIT1002_00481 0.78 +0.8 526,155 + MIT1002_00481 0.78 +0.5 526,228 - MIT1002_00481 0.84 +0.2 526,232 + MIT1002_00481 0.84 -1.6 526,305 + +0.3 526,315 + -0.1 526,371 - +0.8 526,371 - -0.0 526,375 + +1.6 526,444 + -1.0 526,479 + +0.3 526,479 + +1.1 526,479 + -0.2 526,487 - +0.1 526,487 - -1.5 526,487 - -0.6 526,487 - -0.4 526,487 - +0.0 526,591 - +0.4 526,591 - +0.7 526,591 - +0.0 526,591 - -0.2 526,601 - +0.5 526,602 + +0.8 526,610 - +0.6 526,653 + MIT1002_00482 0.11 -0.6 526,661 - MIT1002_00482 0.12 +1.1 526,663 + MIT1002_00482 0.12 +0.9 526,671 - MIT1002_00482 0.12 +0.8 526,685 + MIT1002_00482 0.13 -0.7 526,765 - MIT1002_00482 0.17 -0.0 526,858 + MIT1002_00482 0.22 -0.4 526,866 - MIT1002_00482 0.22 +1.7 526,869 + MIT1002_00482 0.22 -0.6 526,869 + MIT1002_00482 0.22 +0.3 526,877 - MIT1002_00482 0.23 +0.5 526,877 - MIT1002_00482 0.23 -0.9 526,962 + MIT1002_00482 0.27 -1.1 526,970 - MIT1002_00482 0.27 -1.1 527,003 + MIT1002_00482 0.29 +0.5 527,013 + MIT1002_00482 0.30 +0.8 527,040 - MIT1002_00482 0.31 +0.7 527,061 + MIT1002_00482 0.32 -1.7 527,061 + MIT1002_00482 0.32 +2.1 527,099 + MIT1002_00482 0.34 +0.5 527,122 + MIT1002_00482 0.35 +0.1 527,132 + MIT1002_00482 0.36 -1.6 527,140 - MIT1002_00482 0.36 +0.2 527,189 - MIT1002_00482 0.39 +0.8 527,189 - MIT1002_00482 0.39 +1.0 527,193 + MIT1002_00482 0.39 +0.6 527,239 + MIT1002_00482 0.41 -0.5 527,252 - MIT1002_00482 0.42 +1.4 527,357 + MIT1002_00482 0.47 +0.5 527,357 + MIT1002_00482 0.47 -0.7 527,361 - MIT1002_00482 0.47 +1.1 527,403 + MIT1002_00482 0.49 +0.3 527,427 + MIT1002_00482 0.51 +1.4
Or see this region's nucleotide sequence