Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00367

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00366 and MIT1002_00367 overlap by 8 nucleotidesMIT1002_00367 and MIT1002_00368 are separated by 44 nucleotides MIT1002_00366: MIT1002_00366 - Putative nucleoside transporter YegT, at 394,662 to 395,879 _00366 MIT1002_00367: MIT1002_00367 - Hydroxypyruvate isomerase, at 395,872 to 396,801 _00367 MIT1002_00368: MIT1002_00368 - 6'''-hydroxyparomomycin C oxidase, at 396,846 to 398,531 _00368 Position (kb) 395 396 397Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 394.891 kb on - strand, within MIT1002_00366at 394.910 kb on - strand, within MIT1002_00366at 394.915 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.939 kb on + strand, within MIT1002_00366at 394.994 kb on + strand, within MIT1002_00366at 394.999 kb on + strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.029 kb on + strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.094 kb on - strand, within MIT1002_00366at 395.126 kb on + strand, within MIT1002_00366at 395.165 kb on + strand, within MIT1002_00366at 395.170 kb on + strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.210 kb on + strand, within MIT1002_00366at 395.275 kb on + strand, within MIT1002_00366at 395.328 kb on - strand, within MIT1002_00366at 395.495 kb on + strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.559 kb on + strand, within MIT1002_00366at 395.604 kb on - strand, within MIT1002_00366at 395.638 kb on - strand, within MIT1002_00366at 395.649 kb on - strand, within MIT1002_00366at 395.649 kb on - strand, within MIT1002_00366at 395.660 kb on + strand, within MIT1002_00366at 395.707 kb on + strand, within MIT1002_00366at 395.730 kb on - strand, within MIT1002_00366at 395.750 kb on + strand, within MIT1002_00366at 395.789 kb on + strandat 395.789 kb on + strandat 395.789 kb on + strandat 395.797 kb on - strandat 395.808 kb on - strandat 395.854 kb on - strandat 395.887 kb on + strandat 395.907 kb on - strandat 395.941 kb on + strandat 395.941 kb on + strandat 395.944 kb on - strandat 395.949 kb on - strandat 395.968 kb on + strand, within MIT1002_00367at 396.036 kb on - strand, within MIT1002_00367at 396.071 kb on - strand, within MIT1002_00367at 396.117 kb on - strand, within MIT1002_00367at 396.117 kb on - strand, within MIT1002_00367at 396.157 kb on + strand, within MIT1002_00367at 396.217 kb on - strand, within MIT1002_00367at 396.263 kb on + strand, within MIT1002_00367at 396.263 kb on + strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.271 kb on - strand, within MIT1002_00367at 396.336 kb on - strand, within MIT1002_00367at 396.373 kb on + strand, within MIT1002_00367at 396.375 kb on - strand, within MIT1002_00367at 396.382 kb on - strand, within MIT1002_00367at 396.465 kb on - strand, within MIT1002_00367at 396.466 kb on + strand, within MIT1002_00367at 396.485 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.509 kb on + strand, within MIT1002_00367at 396.517 kb on - strand, within MIT1002_00367at 396.517 kb on - strand, within MIT1002_00367at 396.527 kb on - strand, within MIT1002_00367at 396.641 kb on + strand, within MIT1002_00367at 396.709 kb on - strandat 396.718 kb on + strandat 396.718 kb on + strandat 396.726 kb on + strandat 396.726 kb on + strandat 396.726 kb on + strandat 396.726 kb on - strandat 396.753 kb on + strandat 396.766 kb on - strandat 396.795 kb on + strandat 396.838 kb on + strandat 396.841 kb on + strandat 396.843 kb on + strandat 396.849 kb on - strandat 396.849 kb on - strandat 396.906 kb on + strandat 396.928 kb on + strandat 396.951 kb on - strandat 396.993 kb on + strandat 397.054 kb on + strand, within MIT1002_00368at 397.062 kb on - strand, within MIT1002_00368at 397.092 kb on + strand, within MIT1002_00368at 397.154 kb on + strand, within MIT1002_00368at 397.154 kb on + strand, within MIT1002_00368at 397.162 kb on - strand, within MIT1002_00368at 397.162 kb on - strand, within MIT1002_00368at 397.162 kb on - strand, within MIT1002_00368at 397.162 kb on - strand, within MIT1002_00368at 397.173 kb on - strand, within MIT1002_00368at 397.181 kb on - strand, within MIT1002_00368at 397.187 kb on + strand, within MIT1002_00368at 397.195 kb on - strand, within MIT1002_00368at 397.195 kb on - strand, within MIT1002_00368at 397.264 kb on + strand, within MIT1002_00368at 397.272 kb on - strand, within MIT1002_00368at 397.293 kb on + strand, within MIT1002_00368at 397.293 kb on + strand, within MIT1002_00368at 397.301 kb on - strand, within MIT1002_00368at 397.342 kb on + strand, within MIT1002_00368at 397.371 kb on - strand, within MIT1002_00368at 397.400 kb on + strand, within MIT1002_00368at 397.418 kb on + strand, within MIT1002_00368at 397.436 kb on - strand, within MIT1002_00368at 397.452 kb on + strand, within MIT1002_00368at 397.452 kb on + strand, within MIT1002_00368at 397.452 kb on + strand, within MIT1002_00368at 397.506 kb on - strand, within MIT1002_00368at 397.597 kb on - strand, within MIT1002_00368at 397.603 kb on + strand, within MIT1002_00368at 397.603 kb on + strand, within MIT1002_00368at 397.741 kb on + strand, within MIT1002_00368at 397.754 kb on - strand, within MIT1002_00368

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
remove
394,891 - MIT1002_00366 0.19 -0.0
394,910 - MIT1002_00366 0.20 -0.1
394,915 - MIT1002_00366 0.21 -1.9
394,920 - MIT1002_00366 0.21 +0.2
394,920 - MIT1002_00366 0.21 -0.8
394,939 + MIT1002_00366 0.23 -0.3
394,994 + MIT1002_00366 0.27 -0.2
394,999 + MIT1002_00366 0.28 +0.2
395,002 - MIT1002_00366 0.28 -0.0
395,002 - MIT1002_00366 0.28 +1.5
395,007 - MIT1002_00366 0.28 +0.5
395,007 - MIT1002_00366 0.28 -2.6
395,029 + MIT1002_00366 0.30 -0.8
395,037 - MIT1002_00366 0.31 +0.4
395,037 - MIT1002_00366 0.31 +0.1
395,094 - MIT1002_00366 0.35 -1.0
395,126 + MIT1002_00366 0.38 -2.3
395,165 + MIT1002_00366 0.41 +0.6
395,170 + MIT1002_00366 0.42 -0.9
395,178 - MIT1002_00366 0.42 +0.3
395,178 - MIT1002_00366 0.42 -1.5
395,200 + MIT1002_00366 0.44 +0.9
395,200 + MIT1002_00366 0.44 -0.1
395,210 + MIT1002_00366 0.45 -1.1
395,275 + MIT1002_00366 0.50 +0.9
395,328 - MIT1002_00366 0.55 +0.8
395,495 + MIT1002_00366 0.68 +3.4
395,503 - MIT1002_00366 0.69 +1.2
395,503 - MIT1002_00366 0.69 -1.3
395,503 - MIT1002_00366 0.69 -2.4
395,559 + MIT1002_00366 0.74 -0.4
395,604 - MIT1002_00366 0.77 +1.0
395,638 - MIT1002_00366 0.80 +1.4
395,649 - MIT1002_00366 0.81 -0.1
395,649 - MIT1002_00366 0.81 +0.8
395,660 + MIT1002_00366 0.82 +0.6
395,707 + MIT1002_00366 0.86 +0.4
395,730 - MIT1002_00366 0.88 -0.4
395,750 + MIT1002_00366 0.89 -0.3
395,789 + +0.6
395,789 + +1.0
395,789 + +0.5
395,797 - -0.8
395,808 - +1.8
395,854 - +0.5
395,887 + -0.7
395,907 - -0.7
395,941 + -0.1
395,941 + -0.5
395,944 - +0.7
395,949 - +1.0
395,968 + MIT1002_00367 0.10 +0.1
396,036 - MIT1002_00367 0.18 +0.3
396,071 - MIT1002_00367 0.21 -2.1
396,117 - MIT1002_00367 0.26 -0.4
396,117 - MIT1002_00367 0.26 +0.8
396,157 + MIT1002_00367 0.31 +0.6
396,217 - MIT1002_00367 0.37 -0.5
396,263 + MIT1002_00367 0.42 -0.1
396,263 + MIT1002_00367 0.42 -2.2
396,271 - MIT1002_00367 0.43 +0.3
396,271 - MIT1002_00367 0.43 +0.7
396,271 - MIT1002_00367 0.43 -2.3
396,336 - MIT1002_00367 0.50 +0.8
396,373 + MIT1002_00367 0.54 -1.3
396,375 - MIT1002_00367 0.54 -1.7
396,382 - MIT1002_00367 0.55 -0.0
396,465 - MIT1002_00367 0.64 -1.6
396,466 + MIT1002_00367 0.64 +0.2
396,485 + MIT1002_00367 0.66 -0.4
396,509 + MIT1002_00367 0.68 +0.2
396,509 + MIT1002_00367 0.68 +0.1
396,509 + MIT1002_00367 0.68 -1.1
396,517 - MIT1002_00367 0.69 -0.5
396,517 - MIT1002_00367 0.69 +0.5
396,527 - MIT1002_00367 0.70 +0.8
396,641 + MIT1002_00367 0.83 +1.5
396,709 - -0.8
396,718 + -0.6
396,718 + -2.4
396,726 + +0.3
396,726 + -0.1
396,726 + +0.5
396,726 - -0.4
396,753 + +0.7
396,766 - -1.1
396,795 + -0.2
396,838 + +0.8
396,841 + +0.0
396,843 + -0.9
396,849 - +1.5
396,849 - +1.5
396,906 + +0.4
396,928 + -1.8
396,951 - -0.6
396,993 + -0.3
397,054 + MIT1002_00368 0.12 -0.5
397,062 - MIT1002_00368 0.13 +0.1
397,092 + MIT1002_00368 0.15 -0.7
397,154 + MIT1002_00368 0.18 -1.3
397,154 + MIT1002_00368 0.18 +0.4
397,162 - MIT1002_00368 0.19 +0.3
397,162 - MIT1002_00368 0.19 -0.7
397,162 - MIT1002_00368 0.19 +0.7
397,162 - MIT1002_00368 0.19 +1.0
397,173 - MIT1002_00368 0.19 +2.1
397,181 - MIT1002_00368 0.20 +0.6
397,187 + MIT1002_00368 0.20 -0.1
397,195 - MIT1002_00368 0.21 +1.1
397,195 - MIT1002_00368 0.21 -0.7
397,264 + MIT1002_00368 0.25 +0.3
397,272 - MIT1002_00368 0.25 -0.4
397,293 + MIT1002_00368 0.27 -2.0
397,293 + MIT1002_00368 0.27 -2.2
397,301 - MIT1002_00368 0.27 +1.8
397,342 + MIT1002_00368 0.29 +0.8
397,371 - MIT1002_00368 0.31 +0.8
397,400 + MIT1002_00368 0.33 +0.3
397,418 + MIT1002_00368 0.34 +0.7
397,436 - MIT1002_00368 0.35 +0.1
397,452 + MIT1002_00368 0.36 +0.1
397,452 + MIT1002_00368 0.36 -0.5
397,452 + MIT1002_00368 0.36 -1.1
397,506 - MIT1002_00368 0.39 +0.2
397,597 - MIT1002_00368 0.45 +0.7
397,603 + MIT1002_00368 0.45 -2.2
397,603 + MIT1002_00368 0.45 -3.9
397,741 + MIT1002_00368 0.53 -1.0
397,754 - MIT1002_00368 0.54 -0.7

Or see this region's nucleotide sequence