Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00309 and MIT1002_00310 are separated by 17 nucleotides MIT1002_00310 and MIT1002_00311 are separated by 20 nucleotides MIT1002_00311 and MIT1002_00312 are separated by 4 nucleotides
MIT1002_00309: MIT1002_00309 - hypothetical protein, at 334,955 to 335,314
_00309
MIT1002_00310: MIT1002_00310 - hypothetical protein, at 335,332 to 335,844
_00310
MIT1002_00311: MIT1002_00311 - hypothetical protein, at 335,865 to 336,563
_00311
MIT1002_00312: MIT1002_00312 - Cation efflux system protein CzcA, at 336,568 to 339,714
_00312
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.889 kb on + strand at 334.895 kb on + strand at 334.899 kb on - strand at 334.908 kb on - strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.967 kb on + strand at 334.974 kb on - strand at 334.975 kb on - strand at 334.975 kb on - strand at 334.976 kb on - strand at 335.001 kb on + strand, within MIT1002_00309 at 335.002 kb on - strand, within MIT1002_00309 at 335.010 kb on - strand, within MIT1002_00309 at 335.016 kb on - strand, within MIT1002_00309 at 335.139 kb on + strand, within MIT1002_00309 at 335.147 kb on - strand, within MIT1002_00309 at 335.195 kb on + strand, within MIT1002_00309 at 335.195 kb on + strand, within MIT1002_00309 at 335.195 kb on + strand, within MIT1002_00309 at 335.195 kb on + strand, within MIT1002_00309 at 335.196 kb on + strand, within MIT1002_00309 at 335.203 kb on - strand, within MIT1002_00309 at 335.203 kb on - strand, within MIT1002_00309 at 335.205 kb on + strand, within MIT1002_00309 at 335.205 kb on + strand, within MIT1002_00309 at 335.205 kb on + strand, within MIT1002_00309 at 335.218 kb on + strand, within MIT1002_00309 at 335.218 kb on + strand, within MIT1002_00309 at 335.218 kb on + strand, within MIT1002_00309 at 335.218 kb on + strand, within MIT1002_00309 at 335.223 kb on + strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.226 kb on - strand, within MIT1002_00309 at 335.239 kb on + strand, within MIT1002_00309 at 335.239 kb on + strand, within MIT1002_00309 at 335.260 kb on + strand, within MIT1002_00309 at 335.260 kb on + strand, within MIT1002_00309 at 335.308 kb on + strand at 335.358 kb on - strand at 335.404 kb on - strand, within MIT1002_00310 at 335.418 kb on + strand, within MIT1002_00310 at 335.451 kb on + strand, within MIT1002_00310 at 335.477 kb on + strand, within MIT1002_00310 at 335.485 kb on - strand, within MIT1002_00310 at 335.485 kb on - strand, within MIT1002_00310 at 335.485 kb on - strand, within MIT1002_00310 at 335.492 kb on - strand, within MIT1002_00310 at 335.511 kb on + strand, within MIT1002_00310 at 335.564 kb on + strand, within MIT1002_00310 at 335.572 kb on - strand, within MIT1002_00310 at 335.579 kb on + strand, within MIT1002_00310 at 335.583 kb on + strand, within MIT1002_00310 at 335.595 kb on + strand, within MIT1002_00310 at 335.603 kb on - strand, within MIT1002_00310 at 335.608 kb on + strand, within MIT1002_00310 at 335.627 kb on + strand, within MIT1002_00310 at 335.635 kb on - strand, within MIT1002_00310 at 335.657 kb on + strand, within MIT1002_00310 at 335.665 kb on - strand, within MIT1002_00310 at 335.700 kb on + strand, within MIT1002_00310 at 335.700 kb on + strand, within MIT1002_00310 at 335.708 kb on - strand, within MIT1002_00310 at 335.724 kb on + strand, within MIT1002_00310 at 335.733 kb on + strand, within MIT1002_00310 at 335.733 kb on + strand, within MIT1002_00310 at 335.738 kb on + strand, within MIT1002_00310 at 335.738 kb on + strand, within MIT1002_00310 at 335.740 kb on + strand, within MIT1002_00310 at 335.740 kb on + strand, within MIT1002_00310 at 335.741 kb on - strand, within MIT1002_00310 at 335.741 kb on - strand, within MIT1002_00310 at 335.741 kb on - strand, within MIT1002_00310 at 335.741 kb on - strand, within MIT1002_00310 at 335.748 kb on - strand, within MIT1002_00310 at 335.766 kb on + strand, within MIT1002_00310 at 335.767 kb on + strand, within MIT1002_00310 at 335.773 kb on + strand, within MIT1002_00310 at 335.773 kb on + strand, within MIT1002_00310 at 335.783 kb on + strand, within MIT1002_00310 at 335.870 kb on - strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.919 kb on + strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.929 kb on + strand at 336.007 kb on + strand, within MIT1002_00311 at 336.007 kb on + strand, within MIT1002_00311 at 336.015 kb on - strand, within MIT1002_00311 at 336.035 kb on + strand, within MIT1002_00311 at 336.043 kb on - strand, within MIT1002_00311 at 336.043 kb on - strand, within MIT1002_00311 at 336.045 kb on + strand, within MIT1002_00311 at 336.056 kb on + strand, within MIT1002_00311 at 336.058 kb on - strand, within MIT1002_00311 at 336.066 kb on + strand, within MIT1002_00311 at 336.066 kb on + strand, within MIT1002_00311 at 336.120 kb on - strand, within MIT1002_00311 at 336.156 kb on - strand, within MIT1002_00311 at 336.156 kb on - strand, within MIT1002_00311 at 336.181 kb on + strand, within MIT1002_00311 at 336.181 kb on + strand, within MIT1002_00311 at 336.189 kb on - strand, within MIT1002_00311 at 336.244 kb on + strand, within MIT1002_00311 at 336.284 kb on - strand, within MIT1002_00311 at 336.298 kb on + strand, within MIT1002_00311 at 336.298 kb on + strand, within MIT1002_00311 at 336.306 kb on - strand, within MIT1002_00311 at 336.308 kb on + strand, within MIT1002_00311 at 336.316 kb on - strand, within MIT1002_00311 at 336.335 kb on - strand, within MIT1002_00311 at 336.335 kb on - strand, within MIT1002_00311 at 336.393 kb on - strand, within MIT1002_00311 at 336.398 kb on + strand, within MIT1002_00311 at 336.468 kb on + strand, within MIT1002_00311 at 336.470 kb on + strand, within MIT1002_00311 at 336.470 kb on + strand, within MIT1002_00311 at 336.470 kb on + strand, within MIT1002_00311 at 336.476 kb on - strand, within MIT1002_00311 at 336.478 kb on - strand, within MIT1002_00311 at 336.478 kb on - strand, within MIT1002_00311 at 336.478 kb on - strand, within MIT1002_00311 at 336.490 kb on - strand, within MIT1002_00311 at 336.521 kb on + strand at 336.609 kb on + strand at 336.609 kb on + strand at 336.609 kb on + strand at 336.617 kb on - strand at 336.617 kb on - strand at 336.617 kb on - strand at 336.655 kb on + strand at 336.655 kb on + strand at 336.663 kb on - strand at 336.663 kb on - strand at 336.663 kb on - strand at 336.716 kb on - strand at 336.723 kb on + strand at 336.723 kb on + strand at 336.723 kb on + strand at 336.723 kb on + strand at 336.731 kb on - strand at 336.731 kb on - strand at 336.731 kb on - strand at 336.731 kb on - strand at 336.742 kb on + strand at 336.756 kb on + strand at 336.780 kb on + strand at 336.806 kb on - strand at 336.882 kb on + strand at 336.890 kb on - strand, within MIT1002_00312 at 337.056 kb on - strand, within MIT1002_00312 at 337.093 kb on + strand, within MIT1002_00312 at 337.094 kb on - strand, within MIT1002_00312 at 337.106 kb on + strand, within MIT1002_00312 at 337.120 kb on - strand, within MIT1002_00312 at 337.130 kb on + strand, within MIT1002_00312 at 337.140 kb on + strand, within MIT1002_00312 at 337.195 kb on + strand, within MIT1002_00312 at 337.278 kb on + strand, within MIT1002_00312 at 337.314 kb on + strand, within MIT1002_00312 at 337.322 kb on + strand, within MIT1002_00312 at 337.322 kb on + strand, within MIT1002_00312 at 337.330 kb on - strand, within MIT1002_00312 at 337.330 kb on - strand, within MIT1002_00312 at 337.330 kb on - strand, within MIT1002_00312 at 337.412 kb on - strand, within MIT1002_00312 at 337.457 kb on + strand, within MIT1002_00312 at 337.467 kb on - strand, within MIT1002_00312 at 337.488 kb on + strand, within MIT1002_00312 at 337.488 kb on + strand, within MIT1002_00312 at 337.494 kb on + strand, within MIT1002_00312 at 337.494 kb on + strand, within MIT1002_00312 at 337.502 kb on - strand, within MIT1002_00312 at 337.502 kb on - strand, within MIT1002_00312 at 337.538 kb on - strand, within MIT1002_00312 at 337.553 kb on + strand, within MIT1002_00312 at 337.563 kb on + strand, within MIT1002_00312
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 334,889 + -0.1 334,895 + -0.4 334,899 - +0.1 334,908 - -0.9 334,967 + +1.4 334,967 + -2.0 334,967 + +1.3 334,967 + -0.1 334,967 + +0.3 334,967 + +1.3 334,967 + -2.6 334,967 + +0.3 334,967 + +0.7 334,974 - +0.4 334,975 - +2.2 334,975 - +0.7 334,976 - +0.2 335,001 + MIT1002_00309 0.13 +1.0 335,002 - MIT1002_00309 0.13 +0.3 335,010 - MIT1002_00309 0.15 -0.7 335,016 - MIT1002_00309 0.17 +2.1 335,139 + MIT1002_00309 0.51 -0.6 335,147 - MIT1002_00309 0.53 +0.4 335,195 + MIT1002_00309 0.67 +0.6 335,195 + MIT1002_00309 0.67 -0.5 335,195 + MIT1002_00309 0.67 -0.3 335,195 + MIT1002_00309 0.67 +0.8 335,196 + MIT1002_00309 0.67 -2.1 335,203 - MIT1002_00309 0.69 -1.0 335,203 - MIT1002_00309 0.69 -0.2 335,205 + MIT1002_00309 0.69 +1.2 335,205 + MIT1002_00309 0.69 +0.7 335,205 + MIT1002_00309 0.69 -2.3 335,218 + MIT1002_00309 0.73 -0.1 335,218 + MIT1002_00309 0.73 -1.2 335,218 + MIT1002_00309 0.73 +0.6 335,218 + MIT1002_00309 0.73 -2.5 335,223 + MIT1002_00309 0.74 +0.7 335,226 - MIT1002_00309 0.75 -0.9 335,226 - MIT1002_00309 0.75 -1.7 335,226 - MIT1002_00309 0.75 +0.1 335,226 - MIT1002_00309 0.75 -1.3 335,226 - MIT1002_00309 0.75 -0.5 335,226 - MIT1002_00309 0.75 +0.4 335,239 + MIT1002_00309 0.79 -0.6 335,239 + MIT1002_00309 0.79 +1.6 335,260 + MIT1002_00309 0.85 +1.9 335,260 + MIT1002_00309 0.85 -2.3 335,308 + -0.7 335,358 - +0.6 335,404 - MIT1002_00310 0.14 -3.1 335,418 + MIT1002_00310 0.17 -1.4 335,451 + MIT1002_00310 0.23 -0.6 335,477 + MIT1002_00310 0.28 +0.7 335,485 - MIT1002_00310 0.30 -0.2 335,485 - MIT1002_00310 0.30 -2.6 335,485 - MIT1002_00310 0.30 +0.2 335,492 - MIT1002_00310 0.31 +0.6 335,511 + MIT1002_00310 0.35 +0.5 335,564 + MIT1002_00310 0.45 +0.7 335,572 - MIT1002_00310 0.47 +0.2 335,579 + MIT1002_00310 0.48 -0.1 335,583 + MIT1002_00310 0.49 -1.0 335,595 + MIT1002_00310 0.51 -1.7 335,603 - MIT1002_00310 0.53 +0.5 335,608 + MIT1002_00310 0.54 +0.9 335,627 + MIT1002_00310 0.58 -0.0 335,635 - MIT1002_00310 0.59 +0.1 335,657 + MIT1002_00310 0.63 +0.1 335,665 - MIT1002_00310 0.65 -0.3 335,700 + MIT1002_00310 0.72 +1.1 335,700 + MIT1002_00310 0.72 -0.3 335,708 - MIT1002_00310 0.73 +1.0 335,724 + MIT1002_00310 0.76 -0.6 335,733 + MIT1002_00310 0.78 +0.3 335,733 + MIT1002_00310 0.78 +0.4 335,738 + MIT1002_00310 0.79 -2.2 335,738 + MIT1002_00310 0.79 -0.2 335,740 + MIT1002_00310 0.80 +0.2 335,740 + MIT1002_00310 0.80 -0.7 335,741 - MIT1002_00310 0.80 +0.9 335,741 - MIT1002_00310 0.80 -0.6 335,741 - MIT1002_00310 0.80 +0.6 335,741 - MIT1002_00310 0.80 -1.2 335,748 - MIT1002_00310 0.81 -2.3 335,766 + MIT1002_00310 0.85 +0.6 335,767 + MIT1002_00310 0.85 -1.6 335,773 + MIT1002_00310 0.86 +0.6 335,773 + MIT1002_00310 0.86 -0.1 335,783 + MIT1002_00310 0.88 +0.3 335,870 - +0.5 335,919 + +0.1 335,919 + +0.1 335,919 + +1.0 335,919 + -3.0 335,919 + +0.5 335,919 + -0.1 335,919 + +0.6 335,919 + -0.7 335,919 + -0.2 335,919 + +1.2 335,919 + -0.6 335,919 + -0.6 335,919 + +0.1 335,919 + -0.8 335,919 + -2.4 335,919 + -0.8 335,919 + +0.5 335,927 - +0.0 335,927 - +1.0 335,927 - -0.7 335,927 - -0.2 335,927 - +0.0 335,927 - +0.4 335,927 - +1.0 335,927 - +1.0 335,927 - +0.2 335,927 - -1.2 335,927 - +1.1 335,927 - +0.5 335,927 - -0.4 335,927 - +1.7 335,927 - +1.0 335,927 - -0.1 335,927 - -1.6 335,927 - -0.5 335,927 - +1.2 335,927 - +0.4 335,927 - +0.2 335,927 - +1.1 335,927 - +0.1 335,927 - +0.3 335,929 + -0.8 336,007 + MIT1002_00311 0.20 -0.5 336,007 + MIT1002_00311 0.20 -0.6 336,015 - MIT1002_00311 0.21 -0.3 336,035 + MIT1002_00311 0.24 +2.7 336,043 - MIT1002_00311 0.25 -0.0 336,043 - MIT1002_00311 0.25 -1.4 336,045 + MIT1002_00311 0.26 -1.2 336,056 + MIT1002_00311 0.27 +0.4 336,058 - MIT1002_00311 0.28 -0.2 336,066 + MIT1002_00311 0.29 +1.2 336,066 + MIT1002_00311 0.29 +1.1 336,120 - MIT1002_00311 0.36 +0.3 336,156 - MIT1002_00311 0.42 +0.1 336,156 - MIT1002_00311 0.42 -0.5 336,181 + MIT1002_00311 0.45 +1.1 336,181 + MIT1002_00311 0.45 +0.0 336,189 - MIT1002_00311 0.46 +1.6 336,244 + MIT1002_00311 0.54 +0.5 336,284 - MIT1002_00311 0.60 -1.4 336,298 + MIT1002_00311 0.62 +0.7 336,298 + MIT1002_00311 0.62 +0.6 336,306 - MIT1002_00311 0.63 -0.0 336,308 + MIT1002_00311 0.63 -0.0 336,316 - MIT1002_00311 0.65 +0.5 336,335 - MIT1002_00311 0.67 -0.4 336,335 - MIT1002_00311 0.67 +0.9 336,393 - MIT1002_00311 0.76 +0.5 336,398 + MIT1002_00311 0.76 -0.1 336,468 + MIT1002_00311 0.86 +0.1 336,470 + MIT1002_00311 0.87 +0.9 336,470 + MIT1002_00311 0.87 -0.7 336,470 + MIT1002_00311 0.87 +0.5 336,476 - MIT1002_00311 0.87 +3.2 336,478 - MIT1002_00311 0.88 +0.1 336,478 - MIT1002_00311 0.88 +0.5 336,478 - MIT1002_00311 0.88 +0.3 336,490 - MIT1002_00311 0.89 +0.0 336,521 + -0.5 336,609 + -0.6 336,609 + -0.2 336,609 + +1.3 336,617 - -0.6 336,617 - +1.1 336,617 - -0.2 336,655 + -1.2 336,655 + -1.8 336,663 - -0.5 336,663 - -2.5 336,663 - -0.4 336,716 - +0.6 336,723 + -1.6 336,723 + +2.6 336,723 + -0.5 336,723 + -0.8 336,731 - +0.1 336,731 - -1.2 336,731 - +0.1 336,731 - +0.2 336,742 + -0.5 336,756 + -1.2 336,780 + -0.5 336,806 - +2.4 336,882 + -0.0 336,890 - MIT1002_00312 0.10 +0.9 337,056 - MIT1002_00312 0.16 +0.4 337,093 + MIT1002_00312 0.17 +2.0 337,094 - MIT1002_00312 0.17 +0.3 337,106 + MIT1002_00312 0.17 -0.2 337,120 - MIT1002_00312 0.18 -0.5 337,130 + MIT1002_00312 0.18 +0.9 337,140 + MIT1002_00312 0.18 +1.1 337,195 + MIT1002_00312 0.20 +0.8 337,278 + MIT1002_00312 0.23 -0.5 337,314 + MIT1002_00312 0.24 -0.0 337,322 + MIT1002_00312 0.24 -0.9 337,322 + MIT1002_00312 0.24 +0.8 337,330 - MIT1002_00312 0.24 -1.0 337,330 - MIT1002_00312 0.24 -0.0 337,330 - MIT1002_00312 0.24 -1.6 337,412 - MIT1002_00312 0.27 -1.2 337,457 + MIT1002_00312 0.28 -0.4 337,467 - MIT1002_00312 0.29 -1.0 337,488 + MIT1002_00312 0.29 +0.8 337,488 + MIT1002_00312 0.29 -0.3 337,494 + MIT1002_00312 0.29 -0.7 337,494 + MIT1002_00312 0.29 -1.8 337,502 - MIT1002_00312 0.30 -3.2 337,502 - MIT1002_00312 0.30 -1.3 337,538 - MIT1002_00312 0.31 -0.0 337,553 + MIT1002_00312 0.31 +1.5 337,563 + MIT1002_00312 0.32 -0.5
Or see this region's nucleotide sequence