Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00251 and MIT1002_00252 overlap by 4 nucleotides MIT1002_00252 and MIT1002_00253 overlap by 1 nucleotides MIT1002_00253 and MIT1002_00254 are separated by 66 nucleotides MIT1002_00254 and MIT1002_00255 are separated by 8 nucleotides
MIT1002_00251: MIT1002_00251 - Cation efflux system protein CusB precursor, at 278,538 to 280,556
_00251
MIT1002_00252: MIT1002_00252 - Cation efflux system protein CusA, at 280,553 to 283,690
_00252
MIT1002_00253: MIT1002_00253 - hypothetical protein, at 283,690 to 283,881
_00253
MIT1002_00254: MIT1002_00254 - Copper resistance protein CopC, at 283,948 to 284,340
_00254
MIT1002_00255: MIT1002_00255 - Putative copper export protein, at 284,349 to 285,263
_00255
Position (kb) 280
281
282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 279.666 kb on + strand, within MIT1002_00251 at 279.757 kb on + strand, within MIT1002_00251 at 279.785 kb on - strand, within MIT1002_00251 at 279.820 kb on + strand, within MIT1002_00251 at 279.905 kb on + strand, within MIT1002_00251 at 279.905 kb on + strand, within MIT1002_00251 at 279.913 kb on - strand, within MIT1002_00251 at 279.914 kb on - strand, within MIT1002_00251 at 280.025 kb on + strand, within MIT1002_00251 at 280.106 kb on + strand, within MIT1002_00251 at 280.155 kb on - strand, within MIT1002_00251 at 280.258 kb on - strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.284 kb on + strand, within MIT1002_00251 at 280.289 kb on + strand, within MIT1002_00251 at 280.292 kb on - strand, within MIT1002_00251 at 280.292 kb on - strand, within MIT1002_00251 at 280.292 kb on - strand, within MIT1002_00251 at 280.292 kb on - strand, within MIT1002_00251 at 280.344 kb on - strand, within MIT1002_00251 at 280.351 kb on + strand, within MIT1002_00251 at 280.359 kb on - strand at 280.364 kb on + strand at 280.470 kb on + strand at 280.471 kb on + strand at 280.479 kb on - strand at 280.486 kb on + strand at 280.521 kb on + strand at 280.529 kb on - strand at 280.535 kb on + strand at 280.535 kb on + strand at 280.543 kb on - strand at 280.565 kb on + strand at 280.580 kb on + strand at 280.580 kb on + strand at 280.588 kb on - strand at 280.588 kb on - strand at 280.796 kb on + strand at 280.803 kb on - strand at 280.804 kb on - strand at 280.822 kb on + strand at 280.830 kb on - strand at 280.858 kb on - strand at 280.876 kb on - strand, within MIT1002_00252 at 280.904 kb on + strand, within MIT1002_00252 at 280.913 kb on - strand, within MIT1002_00252 at 280.938 kb on - strand, within MIT1002_00252 at 280.965 kb on + strand, within MIT1002_00252 at 280.987 kb on + strand, within MIT1002_00252 at 281.072 kb on - strand, within MIT1002_00252 at 281.094 kb on + strand, within MIT1002_00252 at 281.100 kb on + strand, within MIT1002_00252 at 281.211 kb on + strand, within MIT1002_00252 at 281.211 kb on + strand, within MIT1002_00252 at 281.219 kb on - strand, within MIT1002_00252 at 281.221 kb on - strand, within MIT1002_00252 at 281.221 kb on - strand, within MIT1002_00252 at 281.239 kb on - strand, within MIT1002_00252 at 281.345 kb on + strand, within MIT1002_00252 at 281.363 kb on - strand, within MIT1002_00252 at 281.371 kb on + strand, within MIT1002_00252 at 281.373 kb on + strand, within MIT1002_00252 at 281.373 kb on + strand, within MIT1002_00252 at 281.405 kb on - strand, within MIT1002_00252 at 281.505 kb on + strand, within MIT1002_00252 at 281.505 kb on - strand, within MIT1002_00252 at 281.513 kb on - strand, within MIT1002_00252 at 281.522 kb on + strand, within MIT1002_00252 at 281.530 kb on - strand, within MIT1002_00252 at 281.532 kb on + strand, within MIT1002_00252 at 281.669 kb on + strand, within MIT1002_00252 at 281.679 kb on - strand, within MIT1002_00252 at 281.706 kb on + strand, within MIT1002_00252 at 281.761 kb on + strand, within MIT1002_00252 at 281.961 kb on - strand, within MIT1002_00252 at 282.017 kb on - strand, within MIT1002_00252 at 282.019 kb on + strand, within MIT1002_00252 at 282.055 kb on + strand, within MIT1002_00252 at 282.115 kb on + strand, within MIT1002_00252 at 282.158 kb on + strand, within MIT1002_00252 at 282.431 kb on + strand, within MIT1002_00252 at 282.454 kb on - strand, within MIT1002_00252 at 282.456 kb on + strand, within MIT1002_00252 at 282.475 kb on + strand, within MIT1002_00252 at 282.500 kb on + strand, within MIT1002_00252 at 282.500 kb on + strand, within MIT1002_00252 at 282.500 kb on + strand, within MIT1002_00252 at 282.508 kb on - strand, within MIT1002_00252 at 282.508 kb on - strand, within MIT1002_00252 at 282.508 kb on - strand, within MIT1002_00252 at 282.559 kb on + strand, within MIT1002_00252 at 282.567 kb on + strand, within MIT1002_00252 at 282.575 kb on - strand, within MIT1002_00252 at 282.591 kb on + strand, within MIT1002_00252 at 282.637 kb on + strand, within MIT1002_00252 at 282.655 kb on - strand, within MIT1002_00252 at 282.662 kb on + strand, within MIT1002_00252 at 282.662 kb on + strand, within MIT1002_00252 at 282.670 kb on - strand, within MIT1002_00252 at 282.680 kb on - strand, within MIT1002_00252 at 282.680 kb on - strand, within MIT1002_00252 at 282.686 kb on + strand, within MIT1002_00252 at 282.739 kb on - strand, within MIT1002_00252 at 282.797 kb on - strand, within MIT1002_00252 at 282.805 kb on - strand, within MIT1002_00252 at 282.807 kb on + strand, within MIT1002_00252 at 282.815 kb on - strand, within MIT1002_00252 at 282.867 kb on + strand, within MIT1002_00252 at 282.898 kb on - strand, within MIT1002_00252 at 282.898 kb on - strand, within MIT1002_00252 at 282.913 kb on + strand, within MIT1002_00252 at 282.914 kb on + strand, within MIT1002_00252 at 283.000 kb on + strand, within MIT1002_00252 at 283.027 kb on - strand, within MIT1002_00252 at 283.035 kb on + strand, within MIT1002_00252 at 283.109 kb on + strand, within MIT1002_00252 at 283.155 kb on - strand, within MIT1002_00252 at 283.155 kb on - strand, within MIT1002_00252 at 283.279 kb on - strand, within MIT1002_00252 at 283.315 kb on + strand, within MIT1002_00252 at 283.404 kb on + strand at 283.413 kb on - strand at 283.446 kb on - strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.559 kb on + strand at 283.559 kb on - strand at 283.621 kb on + strand at 283.840 kb on + strand, within MIT1002_00253 at 283.849 kb on + strand, within MIT1002_00253 at 283.925 kb on + strand at 283.950 kb on - strand at 283.987 kb on - strand at 284.034 kb on - strand, within MIT1002_00254 at 284.034 kb on - strand, within MIT1002_00254 at 284.039 kb on - strand, within MIT1002_00254 at 284.110 kb on - strand, within MIT1002_00254 at 284.216 kb on - strand, within MIT1002_00254 at 284.231 kb on + strand, within MIT1002_00254 at 284.236 kb on + strand, within MIT1002_00254 at 284.319 kb on - strand at 284.321 kb on - strand at 284.355 kb on - strand at 284.367 kb on + strand at 284.399 kb on - strand at 284.414 kb on + strand at 284.429 kb on + strand at 284.670 kb on - strand, within MIT1002_00255 at 284.680 kb on - strand, within MIT1002_00255 at 284.687 kb on + strand, within MIT1002_00255
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4 remove 279,666 + MIT1002_00251 0.56 +0.5 279,757 + MIT1002_00251 0.60 -0.9 279,785 - MIT1002_00251 0.62 -0.2 279,820 + MIT1002_00251 0.63 -0.9 279,905 + MIT1002_00251 0.68 -1.0 279,905 + MIT1002_00251 0.68 -2.2 279,913 - MIT1002_00251 0.68 -0.0 279,914 - MIT1002_00251 0.68 -0.8 280,025 + MIT1002_00251 0.74 +0.0 280,106 + MIT1002_00251 0.78 +0.3 280,155 - MIT1002_00251 0.80 -2.1 280,258 - MIT1002_00251 0.85 +0.1 280,284 + MIT1002_00251 0.86 -0.9 280,284 + MIT1002_00251 0.86 -0.1 280,284 + MIT1002_00251 0.86 -0.3 280,284 + MIT1002_00251 0.86 -1.7 280,284 + MIT1002_00251 0.86 +0.6 280,284 + MIT1002_00251 0.86 +0.3 280,284 + MIT1002_00251 0.86 +1.2 280,284 + MIT1002_00251 0.86 +0.1 280,289 + MIT1002_00251 0.87 +0.2 280,292 - MIT1002_00251 0.87 +0.5 280,292 - MIT1002_00251 0.87 -2.2 280,292 - MIT1002_00251 0.87 -0.1 280,292 - MIT1002_00251 0.87 +0.7 280,344 - MIT1002_00251 0.89 +0.5 280,351 + MIT1002_00251 0.90 -0.6 280,359 - -1.2 280,364 + +1.0 280,470 + +0.8 280,471 + +0.5 280,479 - -1.0 280,486 + +0.8 280,521 + +0.1 280,529 - -0.9 280,535 + -3.3 280,535 + +0.4 280,543 - -0.4 280,565 + +1.3 280,580 + +0.0 280,580 + -0.3 280,588 - +0.1 280,588 - +1.5 280,796 + -1.0 280,803 - +0.6 280,804 - +0.5 280,822 + +0.4 280,830 - +0.0 280,858 - -1.1 280,876 - MIT1002_00252 0.10 -0.5 280,904 + MIT1002_00252 0.11 -0.7 280,913 - MIT1002_00252 0.11 -0.2 280,938 - MIT1002_00252 0.12 +0.9 280,965 + MIT1002_00252 0.13 +0.3 280,987 + MIT1002_00252 0.14 +0.2 281,072 - MIT1002_00252 0.17 -0.3 281,094 + MIT1002_00252 0.17 +0.5 281,100 + MIT1002_00252 0.17 +0.5 281,211 + MIT1002_00252 0.21 +0.1 281,211 + MIT1002_00252 0.21 +0.6 281,219 - MIT1002_00252 0.21 -0.5 281,221 - MIT1002_00252 0.21 -0.3 281,221 - MIT1002_00252 0.21 +0.4 281,239 - MIT1002_00252 0.22 -2.8 281,345 + MIT1002_00252 0.25 -1.2 281,363 - MIT1002_00252 0.26 +0.6 281,371 + MIT1002_00252 0.26 +0.1 281,373 + MIT1002_00252 0.26 +0.7 281,373 + MIT1002_00252 0.26 -0.5 281,405 - MIT1002_00252 0.27 -0.1 281,505 + MIT1002_00252 0.30 +0.5 281,505 - MIT1002_00252 0.30 +0.3 281,513 - MIT1002_00252 0.31 -1.3 281,522 + MIT1002_00252 0.31 -0.4 281,530 - MIT1002_00252 0.31 +1.8 281,532 + MIT1002_00252 0.31 +0.4 281,669 + MIT1002_00252 0.36 -3.1 281,679 - MIT1002_00252 0.36 -1.3 281,706 + MIT1002_00252 0.37 -0.1 281,761 + MIT1002_00252 0.38 +0.4 281,961 - MIT1002_00252 0.45 -1.7 282,017 - MIT1002_00252 0.47 +1.0 282,019 + MIT1002_00252 0.47 -0.9 282,055 + MIT1002_00252 0.48 +0.4 282,115 + MIT1002_00252 0.50 +0.2 282,158 + MIT1002_00252 0.51 -0.3 282,431 + MIT1002_00252 0.60 -0.3 282,454 - MIT1002_00252 0.61 -0.5 282,456 + MIT1002_00252 0.61 -1.0 282,475 + MIT1002_00252 0.61 -1.2 282,500 + MIT1002_00252 0.62 -0.6 282,500 + MIT1002_00252 0.62 +0.5 282,500 + MIT1002_00252 0.62 -3.7 282,508 - MIT1002_00252 0.62 +0.7 282,508 - MIT1002_00252 0.62 -0.2 282,508 - MIT1002_00252 0.62 -0.1 282,559 + MIT1002_00252 0.64 -0.0 282,567 + MIT1002_00252 0.64 +0.3 282,575 - MIT1002_00252 0.64 -0.2 282,591 + MIT1002_00252 0.65 -1.6 282,637 + MIT1002_00252 0.66 +1.3 282,655 - MIT1002_00252 0.67 -0.1 282,662 + MIT1002_00252 0.67 -0.4 282,662 + MIT1002_00252 0.67 -0.3 282,670 - MIT1002_00252 0.67 -0.4 282,680 - MIT1002_00252 0.68 -1.0 282,680 - MIT1002_00252 0.68 +0.6 282,686 + MIT1002_00252 0.68 +0.7 282,739 - MIT1002_00252 0.70 +0.8 282,797 - MIT1002_00252 0.72 -0.4 282,805 - MIT1002_00252 0.72 +0.2 282,807 + MIT1002_00252 0.72 +0.4 282,815 - MIT1002_00252 0.72 -0.0 282,867 + MIT1002_00252 0.74 -1.0 282,898 - MIT1002_00252 0.75 +0.9 282,898 - MIT1002_00252 0.75 -2.1 282,913 + MIT1002_00252 0.75 -0.4 282,914 + MIT1002_00252 0.75 -0.2 283,000 + MIT1002_00252 0.78 -1.6 283,027 - MIT1002_00252 0.79 -0.0 283,035 + MIT1002_00252 0.79 -3.4 283,109 + MIT1002_00252 0.81 -0.0 283,155 - MIT1002_00252 0.83 -0.9 283,155 - MIT1002_00252 0.83 +0.3 283,279 - MIT1002_00252 0.87 +0.9 283,315 + MIT1002_00252 0.88 -0.4 283,404 + -1.5 283,413 - +0.5 283,446 - +2.2 283,449 + -0.5 283,449 + -0.0 283,449 + +0.3 283,449 + -1.0 283,449 + +0.5 283,449 + +0.5 283,449 + -0.3 283,449 + +0.0 283,454 + -0.2 283,454 + +1.4 283,454 + -0.0 283,454 + +0.9 283,454 + +0.4 283,454 + -1.0 283,454 + +0.0 283,454 + +1.4 283,457 - +0.6 283,457 - -2.0 283,457 - -0.0 283,457 - +1.1 283,462 - -1.3 283,462 - -0.5 283,462 - +0.0 283,462 - +0.2 283,462 - -1.2 283,462 - +0.4 283,462 - -0.1 283,462 - +0.7 283,464 + -0.3 283,464 + -2.8 283,464 + +1.2 283,464 + +0.7 283,464 + +0.2 283,464 + +0.8 283,464 + -0.8 283,464 + -0.4 283,464 + -1.3 283,464 + -0.5 283,464 + -0.8 283,464 + +1.3 283,464 + -1.0 283,472 - -0.4 283,472 - -0.3 283,472 - +0.5 283,472 - +0.8 283,472 - +0.2 283,472 - -1.1 283,472 - +0.6 283,472 - +0.3 283,472 - -3.2 283,472 - -1.6 283,472 - -0.2 283,472 - -3.8 283,559 + -0.2 283,559 - +0.7 283,621 + -0.4 283,840 + MIT1002_00253 0.78 -0.5 283,849 + MIT1002_00253 0.83 -0.6 283,925 + +0.6 283,950 - +0.4 283,987 - -0.3 284,034 - MIT1002_00254 0.22 +1.2 284,034 - MIT1002_00254 0.22 +0.1 284,039 - MIT1002_00254 0.23 +0.7 284,110 - MIT1002_00254 0.41 +0.6 284,216 - MIT1002_00254 0.68 +0.2 284,231 + MIT1002_00254 0.72 +0.2 284,236 + MIT1002_00254 0.73 -0.9 284,319 - -3.4 284,321 - +0.9 284,355 - -1.0 284,367 + +0.2 284,399 - +0.9 284,414 + +0.5 284,429 + -0.2 284,670 - MIT1002_00255 0.35 -0.4 284,680 - MIT1002_00255 0.36 +0.6 284,687 + MIT1002_00255 0.37 -2.1
Or see this region's nucleotide sequence