Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00217

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00214 and MIT1002_00215 are separated by 1 nucleotidesMIT1002_00215 and MIT1002_00216 overlap by 11 nucleotidesMIT1002_00216 and MIT1002_00217 overlap by 1 nucleotidesMIT1002_00217 and MIT1002_00218 overlap by 11 nucleotidesMIT1002_00218 and MIT1002_00219 overlap by 1 nucleotides MIT1002_00214: MIT1002_00214 - Serogroup C1, at 237,037 to 237,549 _00214 MIT1002_00215: MIT1002_00215 - Tfp pilus assembly protein PilE, at 237,551 to 238,012 _00215 MIT1002_00216: MIT1002_00216 - Tfp pilus assembly protein PilV, at 238,002 to 238,523 _00216 MIT1002_00217: MIT1002_00217 - hypothetical protein, at 238,523 to 239,266 _00217 MIT1002_00218: MIT1002_00218 - hypothetical protein, at 239,256 to 239,747 _00218 MIT1002_00219: MIT1002_00219 - H-type lectin domain protein, at 239,747 to 243,445 _00219 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 237.581 kb on - strandat 237.613 kb on + strand, within MIT1002_00215at 237.621 kb on + strand, within MIT1002_00215at 237.659 kb on + strand, within MIT1002_00215at 237.668 kb on - strand, within MIT1002_00215at 237.683 kb on + strand, within MIT1002_00215at 237.691 kb on - strand, within MIT1002_00215at 237.691 kb on - strand, within MIT1002_00215at 237.706 kb on + strand, within MIT1002_00215at 237.725 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.787 kb on - strand, within MIT1002_00215at 237.820 kb on + strand, within MIT1002_00215at 237.827 kb on - strand, within MIT1002_00215at 237.934 kb on + strand, within MIT1002_00215at 237.936 kb on + strand, within MIT1002_00215at 237.944 kb on - strand, within MIT1002_00215at 238.010 kb on - strandat 238.049 kb on - strandat 238.055 kb on - strand, within MIT1002_00216at 238.096 kb on + strand, within MIT1002_00216at 238.102 kb on + strand, within MIT1002_00216at 238.110 kb on - strand, within MIT1002_00216at 238.110 kb on - strand, within MIT1002_00216at 238.141 kb on + strand, within MIT1002_00216at 238.149 kb on - strand, within MIT1002_00216at 238.149 kb on - strand, within MIT1002_00216at 238.168 kb on - strand, within MIT1002_00216at 238.174 kb on + strand, within MIT1002_00216at 238.182 kb on - strand, within MIT1002_00216at 238.182 kb on - strand, within MIT1002_00216at 238.218 kb on + strand, within MIT1002_00216at 238.261 kb on - strand, within MIT1002_00216at 238.288 kb on + strand, within MIT1002_00216at 238.311 kb on + strand, within MIT1002_00216at 238.337 kb on + strand, within MIT1002_00216at 238.339 kb on + strand, within MIT1002_00216at 238.410 kb on + strand, within MIT1002_00216at 238.419 kb on - strand, within MIT1002_00216at 238.426 kb on - strand, within MIT1002_00216at 238.460 kb on - strand, within MIT1002_00216at 238.471 kb on + strandat 238.504 kb on - strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.560 kb on + strandat 238.669 kb on - strand, within MIT1002_00217at 238.720 kb on + strand, within MIT1002_00217at 238.728 kb on - strand, within MIT1002_00217at 238.730 kb on + strand, within MIT1002_00217at 238.745 kb on - strand, within MIT1002_00217at 238.757 kb on + strand, within MIT1002_00217at 238.801 kb on - strand, within MIT1002_00217at 238.833 kb on + strand, within MIT1002_00217at 238.833 kb on - strand, within MIT1002_00217at 238.841 kb on + strand, within MIT1002_00217at 238.872 kb on + strand, within MIT1002_00217at 238.985 kb on - strand, within MIT1002_00217at 238.993 kb on + strand, within MIT1002_00217at 239.069 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.108 kb on - strand, within MIT1002_00217at 239.132 kb on + strand, within MIT1002_00217at 239.142 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.165 kb on - strand, within MIT1002_00217at 239.258 kb on - strandat 239.301 kb on - strandat 239.408 kb on - strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.470 kb on - strand, within MIT1002_00218at 239.510 kb on + strand, within MIT1002_00218at 239.556 kb on + strand, within MIT1002_00218at 239.564 kb on - strand, within MIT1002_00218at 239.592 kb on + strand, within MIT1002_00218at 239.600 kb on - strand, within MIT1002_00218at 239.650 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.689 kb on + strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.697 kb on - strand, within MIT1002_00218at 239.805 kb on + strandat 239.813 kb on + strandat 239.841 kb on + strandat 239.866 kb on + strandat 239.866 kb on + strandat 239.932 kb on - strandat 239.942 kb on + strandat 239.979 kb on + strandat 240.002 kb on + strandat 240.010 kb on + strandat 240.017 kb on - strandat 240.018 kb on - strandat 240.024 kb on - strandat 240.059 kb on - strandat 240.115 kb on + strandat 240.186 kb on + strand, within MIT1002_00219

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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237,581 - +1.4
237,613 + MIT1002_00215 0.13 -0.3
237,621 + MIT1002_00215 0.15 +0.0
237,659 + MIT1002_00215 0.23 +0.2
237,668 - MIT1002_00215 0.25 +0.8
237,683 + MIT1002_00215 0.29 +0.8
237,691 - MIT1002_00215 0.30 -1.7
237,691 - MIT1002_00215 0.30 +0.5
237,706 + MIT1002_00215 0.34 +0.7
237,725 + MIT1002_00215 0.38 -0.1
237,779 + MIT1002_00215 0.49 -1.4
237,779 + MIT1002_00215 0.49 +1.0
237,779 + MIT1002_00215 0.49 +0.5
237,787 - MIT1002_00215 0.51 -2.6
237,820 + MIT1002_00215 0.58 +1.4
237,827 - MIT1002_00215 0.60 -0.0
237,934 + MIT1002_00215 0.83 +1.0
237,936 + MIT1002_00215 0.83 +2.6
237,944 - MIT1002_00215 0.85 +0.8
238,010 - +0.6
238,049 - +0.2
238,055 - MIT1002_00216 0.10 +0.6
238,096 + MIT1002_00216 0.18 +1.4
238,102 + MIT1002_00216 0.19 +1.4
238,110 - MIT1002_00216 0.21 -0.1
238,110 - MIT1002_00216 0.21 -0.3
238,141 + MIT1002_00216 0.27 -1.3
238,149 - MIT1002_00216 0.28 -0.4
238,149 - MIT1002_00216 0.28 -0.1
238,168 - MIT1002_00216 0.32 -1.5
238,174 + MIT1002_00216 0.33 +0.7
238,182 - MIT1002_00216 0.34 -0.6
238,182 - MIT1002_00216 0.34 -0.4
238,218 + MIT1002_00216 0.41 -2.8
238,261 - MIT1002_00216 0.50 +0.3
238,288 + MIT1002_00216 0.55 -0.1
238,311 + MIT1002_00216 0.59 +0.8
238,337 + MIT1002_00216 0.64 -0.7
238,339 + MIT1002_00216 0.65 +1.0
238,410 + MIT1002_00216 0.78 +0.9
238,419 - MIT1002_00216 0.80 +0.0
238,426 - MIT1002_00216 0.81 -1.6
238,460 - MIT1002_00216 0.88 -0.5
238,471 + +1.7
238,504 - +3.4
238,554 + +0.1
238,554 + +2.5
238,554 + +0.5
238,554 + +1.5
238,560 + +0.2
238,669 - MIT1002_00217 0.20 +0.4
238,720 + MIT1002_00217 0.26 +1.0
238,728 - MIT1002_00217 0.28 +1.0
238,730 + MIT1002_00217 0.28 +1.1
238,745 - MIT1002_00217 0.30 +0.3
238,757 + MIT1002_00217 0.31 -0.4
238,801 - MIT1002_00217 0.37 +1.1
238,833 + MIT1002_00217 0.42 +1.4
238,833 - MIT1002_00217 0.42 +2.0
238,841 + MIT1002_00217 0.43 +1.0
238,872 + MIT1002_00217 0.47 +1.3
238,985 - MIT1002_00217 0.62 -0.2
238,993 + MIT1002_00217 0.63 -0.1
239,069 + MIT1002_00217 0.73 -0.7
239,100 + MIT1002_00217 0.78 +1.1
239,100 + MIT1002_00217 0.78 +0.6
239,100 + MIT1002_00217 0.78 +1.2
239,100 + MIT1002_00217 0.78 -0.4
239,108 - MIT1002_00217 0.79 +0.7
239,132 + MIT1002_00217 0.82 +1.2
239,142 + MIT1002_00217 0.83 +0.4
239,157 + MIT1002_00217 0.85 -1.8
239,157 + MIT1002_00217 0.85 +0.8
239,157 + MIT1002_00217 0.85 +2.1
239,157 + MIT1002_00217 0.85 +0.4
239,165 - MIT1002_00217 0.86 +1.0
239,258 - +0.1
239,301 - +0.3
239,408 - MIT1002_00218 0.31 +0.5
239,447 + MIT1002_00218 0.39 +1.0
239,447 + MIT1002_00218 0.39 +0.6
239,470 - MIT1002_00218 0.43 +1.2
239,510 + MIT1002_00218 0.52 -1.0
239,556 + MIT1002_00218 0.61 +1.0
239,564 - MIT1002_00218 0.63 +0.9
239,592 + MIT1002_00218 0.68 -0.2
239,600 - MIT1002_00218 0.70 +1.5
239,650 + MIT1002_00218 0.80 +2.5
239,684 + MIT1002_00218 0.87 +1.3
239,684 + MIT1002_00218 0.87 -0.0
239,689 + MIT1002_00218 0.88 +0.1
239,692 - MIT1002_00218 0.89 -0.4
239,692 - MIT1002_00218 0.89 +0.9
239,692 - MIT1002_00218 0.89 +0.4
239,697 - MIT1002_00218 0.90 +0.5
239,805 + +0.6
239,813 + +0.7
239,841 + +0.6
239,866 + -1.7
239,866 + +1.6
239,932 - +0.9
239,942 + -1.1
239,979 + -0.8
240,002 + -0.8
240,010 + +1.8
240,017 - +1.6
240,018 - +0.2
240,024 - +0.1
240,059 - -1.7
240,115 + +0.4
240,186 + MIT1002_00219 0.12 +0.6

Or see this region's nucleotide sequence