Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00188

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00187 and MIT1002_00188 are separated by 172 nucleotidesMIT1002_00188 and MIT1002_00189 overlap by 8 nucleotides MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 MIT1002_00189: MIT1002_00189 - Galactokinase, at 205,697 to 206,836 _00189 Position (kb) 204 205 206Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.165 kb on - strand, within MIT1002_00187at 204.195 kb on + strand, within MIT1002_00187at 204.202 kb on - strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.220 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.244 kb on + strand, within MIT1002_00187at 204.272 kb on - strand, within MIT1002_00187at 204.310 kb on - strand, within MIT1002_00187at 204.325 kb on - strand, within MIT1002_00187at 204.350 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.358 kb on - strand, within MIT1002_00187at 204.627 kb on + strandat 204.639 kb on - strandat 204.659 kb on + strandat 204.666 kb on - strandat 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188at 205.500 kb on + strand, within MIT1002_00188at 205.555 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.573 kb on - strand, within MIT1002_00188at 205.580 kb on + strand, within MIT1002_00188at 205.581 kb on + strand, within MIT1002_00188at 205.629 kb on - strandat 205.629 kb on - strandat 205.845 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 206.038 kb on - strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.093 kb on - strand, within MIT1002_00189at 206.157 kb on - strand, within MIT1002_00189at 206.252 kb on - strand, within MIT1002_00189at 206.346 kb on - strand, within MIT1002_00189at 206.362 kb on - strand, within MIT1002_00189at 206.384 kb on - strand, within MIT1002_00189at 206.395 kb on + strand, within MIT1002_00189at 206.403 kb on - strand, within MIT1002_00189at 206.446 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.540 kb on - strand, within MIT1002_00189at 206.557 kb on + strand, within MIT1002_00189at 206.579 kb on + strand, within MIT1002_00189

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 4
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203,689 - MIT1002_00187 0.23 +3.8
203,720 + MIT1002_00187 0.26 +3.9
203,720 + MIT1002_00187 0.26 +3.7
203,725 + MIT1002_00187 0.26 +4.3
203,728 - MIT1002_00187 0.27 +3.5
203,730 + MIT1002_00187 0.27 +4.1
203,730 + MIT1002_00187 0.27 +4.3
203,730 + MIT1002_00187 0.27 +3.8
203,738 - MIT1002_00187 0.28 +5.5
203,738 - MIT1002_00187 0.28 +3.6
203,738 - MIT1002_00187 0.28 +2.6
203,738 - MIT1002_00187 0.28 +3.6
203,771 - MIT1002_00187 0.31 +3.7
203,798 + MIT1002_00187 0.33 +3.7
203,806 - MIT1002_00187 0.34 +3.5
203,827 - MIT1002_00187 0.36 +3.1
203,858 - MIT1002_00187 0.39 +3.1
203,868 - MIT1002_00187 0.40 +4.3
203,871 + MIT1002_00187 0.41 +3.5
203,980 + MIT1002_00187 0.51 +3.4
204,034 - MIT1002_00187 0.57 +4.6
204,034 - MIT1002_00187 0.57 +4.0
204,165 - MIT1002_00187 0.69 +3.9
204,195 + MIT1002_00187 0.72 +3.2
204,202 - MIT1002_00187 0.73 +4.2
204,214 + MIT1002_00187 0.74 +3.8
204,214 + MIT1002_00187 0.74 +4.4
204,214 + MIT1002_00187 0.74 +3.5
204,214 + MIT1002_00187 0.74 +2.5
204,220 - MIT1002_00187 0.75 +4.2
204,222 - MIT1002_00187 0.75 +3.4
204,222 - MIT1002_00187 0.75 +3.2
204,222 - MIT1002_00187 0.75 +3.9
204,222 - MIT1002_00187 0.75 +4.5
204,240 - MIT1002_00187 0.77 +2.8
204,240 - MIT1002_00187 0.77 +3.7
204,244 + MIT1002_00187 0.77 +4.0
204,272 - MIT1002_00187 0.80 +4.3
204,310 - MIT1002_00187 0.84 +3.0
204,325 - MIT1002_00187 0.85 +3.4
204,350 + MIT1002_00187 0.88 +3.6
204,357 + MIT1002_00187 0.88 +3.4
204,357 + MIT1002_00187 0.88 +4.6
204,358 - MIT1002_00187 0.88 +3.1
204,627 + +0.6
204,639 - -2.6
204,659 + -5.4
204,666 - -3.5
204,698 - -4.5
204,698 - -3.3
204,715 + -4.5
204,715 + -1.8
204,723 - -5.2
204,843 + MIT1002_00188 0.18 -3.3
204,843 + MIT1002_00188 0.18 -5.0
204,851 - MIT1002_00188 0.19 -4.3
204,851 - MIT1002_00188 0.19 -5.8
204,893 + MIT1002_00188 0.23 -3.7
204,901 - MIT1002_00188 0.24 -2.0
204,918 - MIT1002_00188 0.25 -2.3
204,965 - MIT1002_00188 0.30 -3.8
205,061 + MIT1002_00188 0.39 -4.7
205,096 - MIT1002_00188 0.42 -5.9
205,127 + MIT1002_00188 0.45 -3.7
205,127 + MIT1002_00188 0.45 -3.8
205,135 - MIT1002_00188 0.46 -5.4
205,135 - MIT1002_00188 0.46 -2.2
205,203 + MIT1002_00188 0.52 -1.2
205,240 + MIT1002_00188 0.56 -2.5
205,240 + MIT1002_00188 0.56 -5.6
205,240 - MIT1002_00188 0.56 -4.9
205,245 + MIT1002_00188 0.56 -3.2
205,305 + MIT1002_00188 0.62 -6.7
205,323 - MIT1002_00188 0.64 -6.2
205,356 - MIT1002_00188 0.67 -3.0
205,500 + MIT1002_00188 0.81 -3.4
205,555 + MIT1002_00188 0.86 -0.4
205,565 + MIT1002_00188 0.87 -2.1
205,565 + MIT1002_00188 0.87 -3.0
205,573 - MIT1002_00188 0.88 -4.5
205,580 + MIT1002_00188 0.88 -1.2
205,581 + MIT1002_00188 0.88 -3.9
205,629 - -4.4
205,629 - -4.7
205,845 + MIT1002_00189 0.13 -5.0
205,874 + MIT1002_00189 0.16 -4.5
205,874 + MIT1002_00189 0.16 -6.3
205,882 - MIT1002_00189 0.16 -3.5
205,882 - MIT1002_00189 0.16 -6.2
205,882 - MIT1002_00189 0.16 -5.9
205,882 - MIT1002_00189 0.16 -2.0
205,955 + MIT1002_00189 0.23 -3.2
205,955 + MIT1002_00189 0.23 -3.1
205,955 + MIT1002_00189 0.23 -2.7
205,955 + MIT1002_00189 0.23 -2.3
205,963 - MIT1002_00189 0.23 -4.4
205,963 - MIT1002_00189 0.23 -6.0
205,963 - MIT1002_00189 0.23 -4.2
206,038 - MIT1002_00189 0.30 -6.5
206,061 + MIT1002_00189 0.32 -3.9
206,061 + MIT1002_00189 0.32 -4.6
206,066 + MIT1002_00189 0.32 -3.9
206,066 + MIT1002_00189 0.32 -2.0
206,066 + MIT1002_00189 0.32 -4.3
206,069 - MIT1002_00189 0.33 -4.8
206,069 - MIT1002_00189 0.33 -5.8
206,074 - MIT1002_00189 0.33 -5.4
206,074 - MIT1002_00189 0.33 -2.8
206,093 - MIT1002_00189 0.35 -4.0
206,157 - MIT1002_00189 0.40 -6.2
206,252 - MIT1002_00189 0.49 -2.1
206,346 - MIT1002_00189 0.57 -3.2
206,362 - MIT1002_00189 0.58 -2.9
206,384 - MIT1002_00189 0.60 -8.4
206,395 + MIT1002_00189 0.61 -1.2
206,403 - MIT1002_00189 0.62 -1.5
206,446 + MIT1002_00189 0.66 -2.1
206,506 + MIT1002_00189 0.71 -3.1
206,506 + MIT1002_00189 0.71 -4.6
206,540 - MIT1002_00189 0.74 -4.8
206,557 + MIT1002_00189 0.75 -3.1
206,579 + MIT1002_00189 0.77 -3.5

Or see this region's nucleotide sequence