Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04222 and MIT1002_04223 are separated by 42 nucleotides MIT1002_04223 and MIT1002_04224 are separated by 26 nucleotides MIT1002_04224 and MIT1002_04225 overlap by 17 nucleotides
MIT1002_04222: MIT1002_04222 - Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon, at 90,832 to 91,878
_04222
MIT1002_04223: MIT1002_04223 - Transcriptional regulatory protein YycF, at 91,921 to 92,292
_04223
MIT1002_04224: MIT1002_04224 - Hpt domain protein, at 92,319 to 92,687
_04224
MIT1002_04225: MIT1002_04225 - KDP operon transcriptional regulatory protein KdpE, at 92,671 to 93,651
_04225
Position (kb) 92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 91.341 kb on + strand, within MIT1002_04222 at 91.342 kb on + strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.350 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.485 kb on + strand, within MIT1002_04222 at 91.500 kb on + strand, within MIT1002_04222 at 91.553 kb on + strand, within MIT1002_04222 at 91.623 kb on + strand, within MIT1002_04222 at 91.631 kb on - strand, within MIT1002_04222 at 91.631 kb on - strand, within MIT1002_04222 at 91.638 kb on - strand, within MIT1002_04222 at 91.642 kb on + strand, within MIT1002_04222 at 91.664 kb on + strand, within MIT1002_04222 at 91.671 kb on + strand, within MIT1002_04222 at 91.672 kb on - strand, within MIT1002_04222 at 91.694 kb on + strand, within MIT1002_04222 at 91.747 kb on + strand, within MIT1002_04222 at 91.776 kb on + strand at 91.776 kb on + strand at 91.776 kb on + strand at 91.776 kb on + strand at 91.784 kb on - strand at 91.817 kb on - strand at 91.922 kb on - strand at 92.057 kb on + strand, within MIT1002_04223 at 92.131 kb on + strand, within MIT1002_04223 at 92.193 kb on + strand, within MIT1002_04223 at 92.201 kb on - strand, within MIT1002_04223 at 92.309 kb on + strand at 92.311 kb on + strand at 92.319 kb on + strand at 92.321 kb on + strand at 92.377 kb on - strand, within MIT1002_04224 at 92.382 kb on + strand, within MIT1002_04224 at 92.402 kb on - strand, within MIT1002_04224 at 92.406 kb on + strand, within MIT1002_04224 at 92.416 kb on + strand, within MIT1002_04224 at 92.419 kb on + strand, within MIT1002_04224 at 92.424 kb on + strand, within MIT1002_04224 at 92.424 kb on - strand, within MIT1002_04224 at 92.435 kb on + strand, within MIT1002_04224 at 92.496 kb on + strand, within MIT1002_04224 at 92.504 kb on - strand, within MIT1002_04224 at 92.506 kb on - strand, within MIT1002_04224 at 92.506 kb on - strand, within MIT1002_04224 at 92.508 kb on + strand, within MIT1002_04224 at 92.516 kb on - strand, within MIT1002_04224 at 92.516 kb on - strand, within MIT1002_04224 at 92.538 kb on + strand, within MIT1002_04224 at 92.546 kb on - strand, within MIT1002_04224 at 92.595 kb on + strand, within MIT1002_04224 at 92.596 kb on - strand, within MIT1002_04224 at 92.608 kb on - strand, within MIT1002_04224 at 92.608 kb on - strand, within MIT1002_04224 at 92.613 kb on - strand, within MIT1002_04224 at 92.617 kb on + strand, within MIT1002_04224 at 92.618 kb on + strand, within MIT1002_04224 at 92.619 kb on - strand, within MIT1002_04224 at 92.625 kb on - strand, within MIT1002_04224 at 92.625 kb on - strand, within MIT1002_04224 at 92.626 kb on - strand, within MIT1002_04224 at 92.654 kb on + strand at 92.662 kb on + strand at 92.663 kb on - strand at 92.672 kb on + strand at 92.680 kb on - strand at 92.680 kb on - strand at 92.680 kb on - strand at 92.713 kb on + strand at 92.716 kb on - strand at 92.730 kb on + strand at 92.771 kb on - strand, within MIT1002_04225 at 92.844 kb on + strand, within MIT1002_04225 at 92.844 kb on + strand, within MIT1002_04225 at 92.852 kb on - strand, within MIT1002_04225 at 92.852 kb on - strand, within MIT1002_04225 at 92.861 kb on + strand, within MIT1002_04225 at 92.871 kb on + strand, within MIT1002_04225 at 92.871 kb on + strand, within MIT1002_04225 at 92.879 kb on - strand, within MIT1002_04225 at 92.896 kb on - strand, within MIT1002_04225 at 92.896 kb on - strand, within MIT1002_04225 at 92.982 kb on - strand, within MIT1002_04225 at 93.081 kb on + strand, within MIT1002_04225 at 93.114 kb on - strand, within MIT1002_04225 at 93.114 kb on - strand, within MIT1002_04225 at 93.160 kb on + strand, within MIT1002_04225 at 93.160 kb on + strand, within MIT1002_04225 at 93.168 kb on - strand, within MIT1002_04225 at 93.168 kb on - strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.250 kb on + strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.258 kb on - strand, within MIT1002_04225 at 93.259 kb on - strand, within MIT1002_04225 at 93.266 kb on - strand, within MIT1002_04225 at 93.268 kb on - strand, within MIT1002_04225 at 93.275 kb on + strand, within MIT1002_04225 at 93.378 kb on + strand, within MIT1002_04225 at 93.378 kb on + strand, within MIT1002_04225 at 93.386 kb on - strand, within MIT1002_04225 at 93.386 kb on - strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.409 kb on + strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.417 kb on - strand, within MIT1002_04225 at 93.469 kb on + strand, within MIT1002_04225 at 93.488 kb on + strand, within MIT1002_04225 at 93.488 kb on + strand, within MIT1002_04225 at 93.488 kb on + strand, within MIT1002_04225 at 93.488 kb on + strand, within MIT1002_04225 at 93.491 kb on + strand, within MIT1002_04225 at 93.496 kb on + strand, within MIT1002_04225 at 93.496 kb on - strand, within MIT1002_04225 at 93.496 kb on - strand, within MIT1002_04225 at 93.531 kb on + strand, within MIT1002_04225 at 93.531 kb on + strand, within MIT1002_04225 at 93.531 kb on + strand, within MIT1002_04225 at 93.539 kb on - strand, within MIT1002_04225 at 93.539 kb on - strand, within MIT1002_04225 at 93.539 kb on - strand, within MIT1002_04225 at 93.547 kb on - strand, within MIT1002_04225 at 93.605 kb on + strand at 93.618 kb on - strand at 93.633 kb on - strand at 93.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 91,341 + MIT1002_04222 0.49 +0.3 91,342 + MIT1002_04222 0.49 -1.4 91,349 - MIT1002_04222 0.49 -1.0 91,349 - MIT1002_04222 0.49 +0.7 91,349 - MIT1002_04222 0.49 +0.3 91,349 - MIT1002_04222 0.49 +0.3 91,350 - MIT1002_04222 0.49 -0.4 91,413 - MIT1002_04222 0.55 +0.6 91,413 - MIT1002_04222 0.55 -0.9 91,413 - MIT1002_04222 0.55 +0.9 91,485 + MIT1002_04222 0.62 +0.7 91,500 + MIT1002_04222 0.64 +0.6 91,553 + MIT1002_04222 0.69 +0.3 91,623 + MIT1002_04222 0.76 -0.1 91,631 - MIT1002_04222 0.76 -0.8 91,631 - MIT1002_04222 0.76 -0.3 91,638 - MIT1002_04222 0.77 -2.8 91,642 + MIT1002_04222 0.77 +0.4 91,664 + MIT1002_04222 0.79 +0.0 91,671 + MIT1002_04222 0.80 +0.7 91,672 - MIT1002_04222 0.80 -0.5 91,694 + MIT1002_04222 0.82 +0.4 91,747 + MIT1002_04222 0.87 -1.0 91,776 + -1.4 91,776 + -0.1 91,776 + -0.2 91,776 + -1.3 91,784 - -0.8 91,817 - -0.3 91,922 - -0.0 92,057 + MIT1002_04223 0.37 +1.2 92,131 + MIT1002_04223 0.56 -1.7 92,193 + MIT1002_04223 0.73 -0.6 92,201 - MIT1002_04223 0.75 +0.1 92,309 + +0.5 92,311 + -0.5 92,319 + -0.5 92,321 + -3.1 92,377 - MIT1002_04224 0.16 -0.7 92,382 + MIT1002_04224 0.17 -0.6 92,402 - MIT1002_04224 0.22 -2.0 92,406 + MIT1002_04224 0.24 +0.3 92,416 + MIT1002_04224 0.26 +1.3 92,419 + MIT1002_04224 0.27 +0.5 92,424 + MIT1002_04224 0.28 +0.5 92,424 - MIT1002_04224 0.28 +1.5 92,435 + MIT1002_04224 0.31 +0.3 92,496 + MIT1002_04224 0.48 +0.1 92,504 - MIT1002_04224 0.50 +2.0 92,506 - MIT1002_04224 0.51 +0.6 92,506 - MIT1002_04224 0.51 -2.0 92,508 + MIT1002_04224 0.51 +0.2 92,516 - MIT1002_04224 0.53 -0.4 92,516 - MIT1002_04224 0.53 +0.1 92,538 + MIT1002_04224 0.59 -0.3 92,546 - MIT1002_04224 0.62 -1.2 92,595 + MIT1002_04224 0.75 +0.1 92,596 - MIT1002_04224 0.75 +0.6 92,608 - MIT1002_04224 0.78 +0.9 92,608 - MIT1002_04224 0.78 +1.0 92,613 - MIT1002_04224 0.80 +0.8 92,617 + MIT1002_04224 0.81 +0.5 92,618 + MIT1002_04224 0.81 +0.9 92,619 - MIT1002_04224 0.81 +0.3 92,625 - MIT1002_04224 0.83 -0.7 92,625 - MIT1002_04224 0.83 +0.3 92,626 - MIT1002_04224 0.83 -1.0 92,654 + +0.1 92,662 + -0.0 92,663 - -0.0 92,672 + +1.8 92,680 - +2.7 92,680 - -0.1 92,680 - +0.3 92,713 + -0.9 92,716 - +0.1 92,730 + +0.6 92,771 - MIT1002_04225 0.10 -1.1 92,844 + MIT1002_04225 0.18 +0.4 92,844 + MIT1002_04225 0.18 -0.8 92,852 - MIT1002_04225 0.18 +0.2 92,852 - MIT1002_04225 0.18 +0.6 92,861 + MIT1002_04225 0.19 -0.1 92,871 + MIT1002_04225 0.20 -0.6 92,871 + MIT1002_04225 0.20 +2.8 92,879 - MIT1002_04225 0.21 +1.2 92,896 - MIT1002_04225 0.23 -0.9 92,896 - MIT1002_04225 0.23 +0.8 92,982 - MIT1002_04225 0.32 -1.7 93,081 + MIT1002_04225 0.42 +0.8 93,114 - MIT1002_04225 0.45 -0.6 93,114 - MIT1002_04225 0.45 -0.7 93,160 + MIT1002_04225 0.50 +0.0 93,160 + MIT1002_04225 0.50 -0.6 93,168 - MIT1002_04225 0.51 +0.6 93,168 - MIT1002_04225 0.51 -0.6 93,246 + MIT1002_04225 0.59 +0.0 93,246 + MIT1002_04225 0.59 +0.0 93,246 + MIT1002_04225 0.59 +0.6 93,246 + MIT1002_04225 0.59 +1.1 93,246 + MIT1002_04225 0.59 +0.1 93,250 + MIT1002_04225 0.59 -1.7 93,254 - MIT1002_04225 0.59 +0.3 93,254 - MIT1002_04225 0.59 +0.7 93,254 - MIT1002_04225 0.59 -0.4 93,254 - MIT1002_04225 0.59 -0.8 93,254 - MIT1002_04225 0.59 +1.6 93,254 - MIT1002_04225 0.59 +0.0 93,254 - MIT1002_04225 0.59 -0.8 93,258 - MIT1002_04225 0.60 -1.3 93,259 - MIT1002_04225 0.60 +0.5 93,266 - MIT1002_04225 0.61 -0.8 93,268 - MIT1002_04225 0.61 +0.2 93,275 + MIT1002_04225 0.62 +0.1 93,378 + MIT1002_04225 0.72 -0.7 93,378 + MIT1002_04225 0.72 +0.5 93,386 - MIT1002_04225 0.73 +1.9 93,386 - MIT1002_04225 0.73 -0.1 93,409 + MIT1002_04225 0.75 -0.1 93,409 + MIT1002_04225 0.75 +2.0 93,409 + MIT1002_04225 0.75 -2.0 93,409 + MIT1002_04225 0.75 -0.2 93,409 + MIT1002_04225 0.75 -1.0 93,409 + MIT1002_04225 0.75 +1.1 93,409 + MIT1002_04225 0.75 -0.1 93,409 + MIT1002_04225 0.75 -0.9 93,409 + MIT1002_04225 0.75 +0.2 93,409 + MIT1002_04225 0.75 +0.2 93,409 + MIT1002_04225 0.75 -0.9 93,409 + MIT1002_04225 0.75 -1.9 93,409 + MIT1002_04225 0.75 +0.3 93,409 + MIT1002_04225 0.75 +1.1 93,409 + MIT1002_04225 0.75 -0.6 93,409 + MIT1002_04225 0.75 +0.6 93,417 - MIT1002_04225 0.76 +0.4 93,417 - MIT1002_04225 0.76 +1.4 93,417 - MIT1002_04225 0.76 -2.6 93,417 - MIT1002_04225 0.76 +0.6 93,417 - MIT1002_04225 0.76 -1.8 93,417 - MIT1002_04225 0.76 -0.0 93,417 - MIT1002_04225 0.76 -0.9 93,417 - MIT1002_04225 0.76 -0.0 93,417 - MIT1002_04225 0.76 -0.3 93,417 - MIT1002_04225 0.76 -1.3 93,417 - MIT1002_04225 0.76 +0.4 93,417 - MIT1002_04225 0.76 +0.5 93,417 - MIT1002_04225 0.76 -0.2 93,417 - MIT1002_04225 0.76 -0.3 93,417 - MIT1002_04225 0.76 +0.1 93,417 - MIT1002_04225 0.76 +0.8 93,417 - MIT1002_04225 0.76 -0.2 93,417 - MIT1002_04225 0.76 +0.8 93,469 + MIT1002_04225 0.81 -1.2 93,488 + MIT1002_04225 0.83 +0.1 93,488 + MIT1002_04225 0.83 -0.0 93,488 + MIT1002_04225 0.83 +0.3 93,488 + MIT1002_04225 0.83 -0.2 93,491 + MIT1002_04225 0.84 -0.4 93,496 + MIT1002_04225 0.84 +1.1 93,496 - MIT1002_04225 0.84 -0.4 93,496 - MIT1002_04225 0.84 +0.1 93,531 + MIT1002_04225 0.88 -0.2 93,531 + MIT1002_04225 0.88 -1.0 93,531 + MIT1002_04225 0.88 +0.9 93,539 - MIT1002_04225 0.88 +0.8 93,539 - MIT1002_04225 0.88 +0.7 93,539 - MIT1002_04225 0.88 +1.7 93,547 - MIT1002_04225 0.89 +0.5 93,605 + +0.2 93,618 - -0.2 93,633 - -1.2 93,658 + +0.1
Or see this region's nucleotide sequence