Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04210 and MIT1002_04211 are separated by 28 nucleotides MIT1002_04211 and MIT1002_04212 are separated by 307 nucleotides MIT1002_04212 and MIT1002_04213 are separated by 495 nucleotides
MIT1002_04210: MIT1002_04210 - hypothetical protein, at 76,254 to 76,649
_04210
MIT1002_04211: MIT1002_04211 - hypothetical protein, at 76,678 to 77,076
_04211
MIT1002_04212: MIT1002_04212 - hypothetical protein, at 77,384 to 77,590
_04212
MIT1002_04213: MIT1002_04213 - Blue-light-activated protein, at 78,086 to 81,028
_04213
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 76.662 kb on + strand at 76.804 kb on + strand, within MIT1002_04211 at 76.816 kb on + strand, within MIT1002_04211 at 76.816 kb on + strand, within MIT1002_04211 at 76.823 kb on - strand, within MIT1002_04211 at 76.833 kb on - strand, within MIT1002_04211 at 76.871 kb on - strand, within MIT1002_04211 at 76.872 kb on - strand, within MIT1002_04211 at 76.884 kb on - strand, within MIT1002_04211 at 76.897 kb on + strand, within MIT1002_04211 at 76.897 kb on + strand, within MIT1002_04211 at 76.897 kb on + strand, within MIT1002_04211 at 76.902 kb on + strand, within MIT1002_04211 at 76.910 kb on - strand, within MIT1002_04211 at 76.910 kb on - strand, within MIT1002_04211 at 76.944 kb on - strand, within MIT1002_04211 at 76.975 kb on + strand, within MIT1002_04211 at 76.991 kb on - strand, within MIT1002_04211 at 77.005 kb on + strand, within MIT1002_04211 at 77.005 kb on - strand, within MIT1002_04211 at 77.013 kb on - strand, within MIT1002_04211 at 77.138 kb on + strand at 77.146 kb on - strand at 77.222 kb on - strand at 77.286 kb on + strand at 77.291 kb on + strand at 77.299 kb on - strand at 77.360 kb on - strand at 77.408 kb on - strand, within MIT1002_04212 at 77.418 kb on + strand, within MIT1002_04212 at 77.418 kb on + strand, within MIT1002_04212 at 77.576 kb on - strand at 77.610 kb on + strand at 77.742 kb on - strand at 77.758 kb on + strand at 77.766 kb on - strand at 77.800 kb on + strand at 77.818 kb on - strand at 77.874 kb on + strand at 77.882 kb on - strand at 77.928 kb on + strand at 78.032 kb on + strand at 78.060 kb on + strand at 78.098 kb on + strand at 78.098 kb on + strand at 78.106 kb on - strand at 78.106 kb on - strand at 78.106 kb on - strand at 78.122 kb on + strand at 78.124 kb on + strand at 78.126 kb on - strand at 78.132 kb on - strand at 78.183 kb on + strand at 78.185 kb on + strand at 78.193 kb on - strand at 78.193 kb on - strand at 78.193 kb on - strand at 78.193 kb on - strand at 78.193 kb on - strand at 78.201 kb on - strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.210 kb on - strand at 78.210 kb on - strand at 78.211 kb on - strand at 78.211 kb on - strand at 78.211 kb on - strand at 78.223 kb on - strand at 78.255 kb on - strand at 78.267 kb on + strand at 78.314 kb on + strand at 78.314 kb on + strand at 78.322 kb on - strand at 78.322 kb on - strand at 78.410 kb on + strand, within MIT1002_04213 at 78.441 kb on + strand, within MIT1002_04213 at 78.441 kb on + strand, within MIT1002_04213 at 78.449 kb on - strand, within MIT1002_04213 at 78.449 kb on - strand, within MIT1002_04213 at 78.451 kb on + strand, within MIT1002_04213 at 78.454 kb on - strand, within MIT1002_04213 at 78.459 kb on - strand, within MIT1002_04213 at 78.459 kb on - strand, within MIT1002_04213 at 78.459 kb on - strand, within MIT1002_04213 at 78.462 kb on + strand, within MIT1002_04213 at 78.462 kb on + strand, within MIT1002_04213 at 78.469 kb on + strand, within MIT1002_04213 at 78.539 kb on + strand, within MIT1002_04213 at 78.539 kb on + strand, within MIT1002_04213 at 78.539 kb on + strand, within MIT1002_04213 at 78.539 kb on + strand, within MIT1002_04213 at 78.544 kb on + strand, within MIT1002_04213 at 78.547 kb on - strand, within MIT1002_04213 at 78.547 kb on - strand, within MIT1002_04213 at 78.564 kb on + strand, within MIT1002_04213 at 78.589 kb on + strand, within MIT1002_04213
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 76,662 + +0.6 76,804 + MIT1002_04211 0.32 -1.1 76,816 + MIT1002_04211 0.35 -0.5 76,816 + MIT1002_04211 0.35 +0.3 76,823 - MIT1002_04211 0.36 +0.2 76,833 - MIT1002_04211 0.39 -0.2 76,871 - MIT1002_04211 0.48 +0.3 76,872 - MIT1002_04211 0.49 +0.4 76,884 - MIT1002_04211 0.52 +0.8 76,897 + MIT1002_04211 0.55 +0.3 76,897 + MIT1002_04211 0.55 -0.4 76,897 + MIT1002_04211 0.55 +2.4 76,902 + MIT1002_04211 0.56 +0.9 76,910 - MIT1002_04211 0.58 -0.3 76,910 - MIT1002_04211 0.58 +1.0 76,944 - MIT1002_04211 0.67 -0.9 76,975 + MIT1002_04211 0.74 +0.0 76,991 - MIT1002_04211 0.78 +1.4 77,005 + MIT1002_04211 0.82 +0.2 77,005 - MIT1002_04211 0.82 -0.2 77,013 - MIT1002_04211 0.84 +0.9 77,138 + +0.3 77,146 - +0.9 77,222 - +0.1 77,286 + +0.4 77,291 + +3.1 77,299 - -1.4 77,360 - +0.2 77,408 - MIT1002_04212 0.12 +0.3 77,418 + MIT1002_04212 0.16 -0.9 77,418 + MIT1002_04212 0.16 -1.5 77,576 - -2.3 77,610 + -1.7 77,742 - -0.5 77,758 + +0.8 77,766 - +0.0 77,800 + -2.5 77,818 - +1.5 77,874 + -0.9 77,882 - -0.4 77,928 + -0.4 78,032 + -0.3 78,060 + +0.8 78,098 + +1.4 78,098 + -1.7 78,106 - +0.9 78,106 - +0.2 78,106 - -1.3 78,122 + -0.5 78,124 + +0.6 78,126 - -1.0 78,132 - +0.3 78,183 + +0.3 78,185 + +0.6 78,193 - -0.2 78,193 - -0.6 78,193 - -0.2 78,193 - +0.8 78,193 - +0.6 78,201 - +0.0 78,203 + +0.7 78,203 + +0.0 78,203 + -1.9 78,203 + +1.0 78,203 + +0.2 78,203 + -0.8 78,203 + +0.1 78,210 - -0.8 78,210 - -1.0 78,211 - +1.9 78,211 - -2.4 78,211 - -0.4 78,223 - +1.8 78,255 - +0.8 78,267 + -1.2 78,314 + +0.0 78,314 + +1.2 78,322 - +0.1 78,322 - +1.9 78,410 + MIT1002_04213 0.11 -1.2 78,441 + MIT1002_04213 0.12 -2.0 78,441 + MIT1002_04213 0.12 -0.2 78,449 - MIT1002_04213 0.12 +0.7 78,449 - MIT1002_04213 0.12 +0.5 78,451 + MIT1002_04213 0.12 -1.8 78,454 - MIT1002_04213 0.13 -0.4 78,459 - MIT1002_04213 0.13 -1.2 78,459 - MIT1002_04213 0.13 +0.2 78,459 - MIT1002_04213 0.13 -0.4 78,462 + MIT1002_04213 0.13 +0.0 78,462 + MIT1002_04213 0.13 -0.2 78,469 + MIT1002_04213 0.13 +0.8 78,539 + MIT1002_04213 0.15 +1.8 78,539 + MIT1002_04213 0.15 -0.6 78,539 + MIT1002_04213 0.15 +0.7 78,539 + MIT1002_04213 0.15 -0.2 78,544 + MIT1002_04213 0.16 +0.1 78,547 - MIT1002_04213 0.16 -0.1 78,547 - MIT1002_04213 0.16 +0.6 78,564 + MIT1002_04213 0.16 -0.4 78,589 + MIT1002_04213 0.17 +0.3
Or see this region's nucleotide sequence