Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04181 and MIT1002_04182 are separated by 597 nucleotides MIT1002_04182 and MIT1002_04183 overlap by 18 nucleotides MIT1002_04183 and MIT1002_04184 are separated by 570 nucleotides
MIT1002_04181: MIT1002_04181 - hypothetical protein, at 43,138 to 43,488
_04181
MIT1002_04182: MIT1002_04182 - hypothetical protein, at 44,086 to 44,271
_04182
MIT1002_04183: MIT1002_04183 - hypothetical protein, at 44,254 to 44,454
_04183
MIT1002_04184: MIT1002_04184 - hypothetical protein, at 45,025 to 46,323
_04184
Position (kb) 44
45 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 43.108 kb on + strand at 43.134 kb on + strand at 43.156 kb on - strand at 43.214 kb on - strand, within MIT1002_04181 at 43.292 kb on + strand, within MIT1002_04181 at 43.293 kb on - strand, within MIT1002_04181 at 43.300 kb on - strand, within MIT1002_04181 at 43.310 kb on + strand, within MIT1002_04181 at 43.310 kb on + strand, within MIT1002_04181 at 43.318 kb on + strand, within MIT1002_04181 at 43.318 kb on - strand, within MIT1002_04181 at 43.329 kb on + strand, within MIT1002_04181 at 43.350 kb on + strand, within MIT1002_04181 at 43.350 kb on + strand, within MIT1002_04181 at 43.350 kb on + strand, within MIT1002_04181 at 43.350 kb on + strand, within MIT1002_04181 at 43.358 kb on - strand, within MIT1002_04181 at 43.358 kb on - strand, within MIT1002_04181 at 43.358 kb on - strand, within MIT1002_04181 at 43.358 kb on - strand, within MIT1002_04181 at 43.378 kb on - strand, within MIT1002_04181 at 43.442 kb on + strand, within MIT1002_04181 at 43.450 kb on - strand, within MIT1002_04181 at 43.497 kb on + strand at 43.497 kb on + strand at 43.505 kb on - strand at 43.510 kb on - strand at 43.564 kb on + strand at 43.572 kb on - strand at 43.572 kb on - strand at 43.610 kb on + strand at 43.623 kb on + strand at 43.631 kb on - strand at 43.636 kb on + strand at 43.636 kb on + strand at 43.641 kb on + strand at 43.641 kb on + strand at 43.641 kb on + strand at 43.655 kb on - strand at 43.656 kb on - strand at 43.677 kb on - strand at 43.730 kb on + strand at 43.731 kb on + strand at 43.731 kb on + strand at 43.731 kb on + strand at 43.731 kb on + strand at 43.738 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.739 kb on - strand at 43.781 kb on + strand at 43.783 kb on + strand at 43.783 kb on + strand at 43.783 kb on + strand at 43.791 kb on - strand at 43.791 kb on - strand at 43.791 kb on - strand at 43.791 kb on - strand at 43.805 kb on - strand at 43.815 kb on - strand at 43.823 kb on - strand at 43.850 kb on + strand at 43.850 kb on + strand at 43.915 kb on + strand at 43.986 kb on - strand at 44.002 kb on + strand at 44.002 kb on + strand at 44.002 kb on + strand at 44.010 kb on + strand at 44.010 kb on - strand at 44.052 kb on + strand at 44.058 kb on - strand at 44.081 kb on + strand at 44.084 kb on + strand at 44.137 kb on + strand, within MIT1002_04182 at 44.138 kb on + strand, within MIT1002_04182 at 44.146 kb on - strand, within MIT1002_04182 at 44.146 kb on - strand, within MIT1002_04182 at 44.146 kb on - strand, within MIT1002_04182 at 44.146 kb on - strand, within MIT1002_04182 at 44.170 kb on - strand, within MIT1002_04182 at 44.207 kb on + strand, within MIT1002_04182 at 44.207 kb on + strand, within MIT1002_04182 at 44.219 kb on + strand, within MIT1002_04182 at 44.227 kb on - strand, within MIT1002_04182 at 44.230 kb on + strand, within MIT1002_04182 at 44.230 kb on + strand, within MIT1002_04182 at 44.238 kb on - strand, within MIT1002_04182 at 44.238 kb on - strand, within MIT1002_04182 at 44.238 kb on - strand, within MIT1002_04182 at 44.238 kb on - strand, within MIT1002_04182 at 44.289 kb on + strand, within MIT1002_04183 at 44.395 kb on - strand, within MIT1002_04183 at 44.506 kb on + strand at 44.506 kb on + strand at 44.514 kb on - strand at 44.514 kb on - strand at 44.527 kb on - strand at 44.565 kb on - strand at 44.618 kb on - strand at 44.633 kb on + strand at 44.633 kb on + strand at 44.641 kb on - strand at 44.747 kb on - strand at 44.761 kb on + strand at 44.761 kb on + strand at 44.761 kb on + strand at 44.761 kb on + strand at 44.769 kb on - strand at 44.769 kb on - strand at 44.769 kb on - strand at 44.807 kb on + strand at 44.838 kb on + strand at 44.846 kb on - strand at 44.901 kb on + strand at 44.973 kb on + strand at 45.111 kb on - strand at 45.211 kb on - strand, within MIT1002_04184 at 45.236 kb on + strand, within MIT1002_04184 at 45.259 kb on + strand, within MIT1002_04184 at 45.267 kb on + strand, within MIT1002_04184
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 43,108 + -1.6 43,134 + +0.5 43,156 - +1.3 43,214 - MIT1002_04181 0.22 +0.6 43,292 + MIT1002_04181 0.44 -4.8 43,293 - MIT1002_04181 0.44 +0.1 43,300 - MIT1002_04181 0.46 +0.5 43,310 + MIT1002_04181 0.49 -1.2 43,310 + MIT1002_04181 0.49 +0.2 43,318 + MIT1002_04181 0.51 +0.1 43,318 - MIT1002_04181 0.51 +0.1 43,329 + MIT1002_04181 0.54 +0.2 43,350 + MIT1002_04181 0.60 -1.6 43,350 + MIT1002_04181 0.60 +0.7 43,350 + MIT1002_04181 0.60 +0.6 43,350 + MIT1002_04181 0.60 +0.5 43,358 - MIT1002_04181 0.63 +0.6 43,358 - MIT1002_04181 0.63 +0.5 43,358 - MIT1002_04181 0.63 +0.2 43,358 - MIT1002_04181 0.63 +0.0 43,378 - MIT1002_04181 0.68 -0.9 43,442 + MIT1002_04181 0.87 +0.5 43,450 - MIT1002_04181 0.89 -0.1 43,497 + -0.9 43,497 + +0.3 43,505 - -0.5 43,510 - +0.1 43,564 + -4.1 43,572 - +0.9 43,572 - +0.8 43,610 + -0.2 43,623 + -0.7 43,631 - +1.0 43,636 + -2.4 43,636 + -0.0 43,641 + +0.6 43,641 + -0.6 43,641 + +0.7 43,655 - +0.5 43,656 - -0.7 43,677 - +1.9 43,730 + -0.1 43,731 + -0.1 43,731 + +0.1 43,731 + +0.4 43,731 + -0.2 43,738 - -1.7 43,739 - +0.5 43,739 - -2.2 43,739 - -0.4 43,739 - +0.3 43,739 - +0.8 43,739 - -0.2 43,739 - -0.1 43,781 + -1.6 43,783 + +0.1 43,783 + -0.4 43,783 + +0.2 43,791 - -0.1 43,791 - -0.4 43,791 - -0.4 43,791 - -0.3 43,805 - -0.7 43,815 - -0.6 43,823 - -0.9 43,850 + +0.3 43,850 + -1.4 43,915 + -0.4 43,986 - +1.2 44,002 + +0.2 44,002 + -0.4 44,002 + -1.0 44,010 + +0.1 44,010 - -1.0 44,052 + +0.7 44,058 - +0.3 44,081 + +1.0 44,084 + +1.3 44,137 + MIT1002_04182 0.27 +0.6 44,138 + MIT1002_04182 0.28 +0.4 44,146 - MIT1002_04182 0.32 +0.2 44,146 - MIT1002_04182 0.32 +0.6 44,146 - MIT1002_04182 0.32 -0.4 44,146 - MIT1002_04182 0.32 -0.1 44,170 - MIT1002_04182 0.45 +1.8 44,207 + MIT1002_04182 0.65 +1.9 44,207 + MIT1002_04182 0.65 +0.9 44,219 + MIT1002_04182 0.72 +0.9 44,227 - MIT1002_04182 0.76 +1.0 44,230 + MIT1002_04182 0.77 +0.0 44,230 + MIT1002_04182 0.77 +0.4 44,238 - MIT1002_04182 0.82 +1.2 44,238 - MIT1002_04182 0.82 -1.0 44,238 - MIT1002_04182 0.82 -0.5 44,238 - MIT1002_04182 0.82 -1.0 44,289 + MIT1002_04183 0.17 +0.7 44,395 - MIT1002_04183 0.70 +1.0 44,506 + -1.7 44,506 + -0.3 44,514 - -0.4 44,514 - -0.5 44,527 - +0.3 44,565 - -0.7 44,618 - +0.7 44,633 + +0.2 44,633 + -0.2 44,641 - -0.5 44,747 - +0.2 44,761 + +0.0 44,761 + +0.5 44,761 + -0.1 44,761 + -0.2 44,769 - +0.2 44,769 - +0.8 44,769 - -2.0 44,807 + +1.1 44,838 + -0.2 44,846 - +0.9 44,901 + -0.1 44,973 + +0.8 45,111 - -0.7 45,211 - MIT1002_04184 0.14 -0.4 45,236 + MIT1002_04184 0.16 +1.8 45,259 + MIT1002_04184 0.18 +0.1 45,267 + MIT1002_04184 0.19 +0.1
Or see this region's nucleotide sequence