Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04018

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
4,503,862	+		MIT1002_04016	0.86	-0.4
4,503,883	+		MIT1002_04016	0.88	-0.5
4,503,888	+		MIT1002_04016	0.89	-2.6
4,503,888	+		MIT1002_04016	0.89	+0.4
4,503,896	-		MIT1002_04016	0.90	-1.2
4,503,896	-		MIT1002_04016	0.90	-0.6
4,503,923	+				-0.6
4,503,925	+				-0.4
4,503,933	-				-0.2
4,503,933	-				-1.6
4,503,933	-				-0.6
4,503,933	-				+0.1
4,503,935	+				-1.9
4,503,943	-				-0.7
4,503,985	+				-1.1
4,503,985	+				-0.2
4,503,993	-				+0.4
4,503,993	-				-0.7
4,503,993	-				+0.2
4,504,048	+				+0.4
4,504,074	-				-3.6
4,504,113	-				-0.7
4,504,219	+		MIT1002_04017	0.20	+1.1
4,504,232	-		MIT1002_04017	0.22	+0.7
4,504,249	+		MIT1002_04017	0.24	+0.1
4,504,299	-		MIT1002_04017	0.31	+0.0
4,504,374	+		MIT1002_04017	0.42	-0.2
4,504,381	+		MIT1002_04017	0.43	-2.2
4,504,471	-		MIT1002_04017	0.55	+0.7
4,504,489	-		MIT1002_04017	0.58	-1.0
4,504,507	-		MIT1002_04017	0.60	+0.8
4,504,514	-		MIT1002_04017	0.61	-1.2
4,504,607	+		MIT1002_04017	0.74	-0.1
4,504,614	+		MIT1002_04017	0.75	+0.2
4,504,614	+		MIT1002_04017	0.75	+1.0
4,504,614	+		MIT1002_04017	0.75	-0.6
4,504,614	+		MIT1002_04017	0.75	+0.4
4,504,614	+		MIT1002_04017	0.75	-1.5
4,504,622	-		MIT1002_04017	0.76	+0.5
4,504,622	-		MIT1002_04017	0.76	+0.0
4,504,666	-		MIT1002_04017	0.83	-1.7
4,504,673	-		MIT1002_04017	0.84	-1.0
4,504,698	-		MIT1002_04017	0.87	+1.6
4,504,760	+				+0.3
4,504,768	-				+0.7
4,504,778	-				+0.8
4,504,791	+				-0.1
4,504,792	-				-2.1
4,504,882	-				-1.0
4,504,887	-				-0.8
4,504,909	-				-0.8
4,504,910	+				-1.1
4,504,910	+				-0.4
4,504,910	+				-1.0
4,504,910	+				-2.0
4,504,910	+				-0.8
4,504,910	+				-1.0
4,504,910	+				-0.9
4,504,918	-				+2.3
4,504,918	-				+0.3
4,504,918	-				-1.0
4,504,918	-				-0.1
4,504,918	-				+0.3
4,504,918	-				-1.1
4,504,918	-				-1.7
4,504,918	-				-2.5
4,504,918	-				-3.5
4,504,918	-				+1.2
4,504,918	-				+1.6
4,504,923	-				-0.4
4,505,037	+				-0.4
4,505,037	+				-0.3
4,505,057	-				+0.3
4,505,065	+				-1.7
4,505,065	+				+0.1
4,505,077	+				-3.4
4,505,085	-				+0.3
4,505,165	+		MIT1002_04018	0.12	+0.1
4,505,191	-		MIT1002_04018	0.13	-0.3
4,505,208	-		MIT1002_04018	0.14	-2.7
4,505,225	-		MIT1002_04018	0.14	-1.0
4,505,303	+		MIT1002_04018	0.17	-1.5
4,505,556	+		MIT1002_04018	0.27	+0.2
4,505,565	+		MIT1002_04018	0.27	-1.4
4,505,618	+		MIT1002_04018	0.29	+0.1
4,505,626	-		MIT1002_04018	0.29	+1.7
4,505,664	+		MIT1002_04018	0.31	-0.6
4,505,672	-		MIT1002_04018	0.31	+0.1
4,505,703	+		MIT1002_04018	0.32	-3.1
4,505,704	+		MIT1002_04018	0.32	+0.7
4,505,711	+		MIT1002_04018	0.33	+0.2
4,505,712	-		MIT1002_04018	0.33	-1.1
4,505,712	-		MIT1002_04018	0.33	-0.4
4,505,721	+		MIT1002_04018	0.33	-2.3
4,505,721	+		MIT1002_04018	0.33	-0.9
4,505,721	+		MIT1002_04018	0.33	+0.7
4,505,729	-		MIT1002_04018	0.33	-0.2
4,505,729	-		MIT1002_04018	0.33	-1.1
4,505,729	-		MIT1002_04018	0.33	-3.7
4,505,799	+		MIT1002_04018	0.36	-0.9
4,505,801	-		MIT1002_04018	0.36	+0.7
4,505,915	-		MIT1002_04018	0.40	-2.7
4,505,931	+		MIT1002_04018	0.41	-2.0
4,505,931	+		MIT1002_04018	0.41	-0.5
4,505,931	+		MIT1002_04018	0.41	-0.7
4,505,939	-		MIT1002_04018	0.41	+1.7
4,505,939	-		MIT1002_04018	0.41	+0.1
4,505,956	+		MIT1002_04018	0.42	-0.1
4,505,956	+		MIT1002_04018	0.42	-0.4
4,505,956	+		MIT1002_04018	0.42	-0.4
4,505,956	+		MIT1002_04018	0.42	-0.7
4,505,956	+		MIT1002_04018	0.42	-1.6
4,505,964	-		MIT1002_04018	0.42	-1.3
4,505,964	-		MIT1002_04018	0.42	+1.0
4,505,964	-		MIT1002_04018	0.42	-0.5
4,505,964	-		MIT1002_04018	0.42	-2.0
4,505,964	-		MIT1002_04018	0.42	-0.1
4,505,964	-		MIT1002_04018	0.42	-1.2
4,505,964	-		MIT1002_04018	0.42	-0.0
4,505,964	-		MIT1002_04018	0.42	-2.2
4,505,964	-		MIT1002_04018	0.42	-0.3
4,505,964	-		MIT1002_04018	0.42	-1.8
4,505,964	-		MIT1002_04018	0.42	-0.1
4,506,013	-		MIT1002_04018	0.44	-1.9
4,506,078	-		MIT1002_04018	0.46	-1.4
4,506,114	-		MIT1002_04018	0.48	-2.2
4,506,114	-		MIT1002_04018	0.48	-0.3
4,506,140	-		MIT1002_04018	0.49	-0.8
4,506,295	+		MIT1002_04018	0.55	-1.4
4,506,327	+		MIT1002_04018	0.56	-0.9
4,506,405	+		MIT1002_04018	0.59	-1.4
4,506,459	+		MIT1002_04018	0.61	-0.7
4,506,459	+		MIT1002_04018	0.61	-0.5
4,506,523	-		MIT1002_04018	0.63	-0.2
4,506,548	+		MIT1002_04018	0.64	-0.1
4,506,553	+		MIT1002_04018	0.64	+0.1
4,506,556	-		MIT1002_04018	0.64	-1.7
4,506,556	-		MIT1002_04018	0.64	-1.1
4,506,650	+		MIT1002_04018	0.68	-0.6
4,506,675	+		MIT1002_04018	0.69	-1.5
4,506,751	+		MIT1002_04018	0.72	-1.1
4,506,793	+		MIT1002_04018	0.73	-1.0
4,506,820	+		MIT1002_04018	0.74	-1.4
4,506,904	-		MIT1002_04018	0.77	+1.1
4,506,937	-		MIT1002_04018	0.79	-1.3
4,507,019	-		MIT1002_04018	0.82	-0.7
4,507,023	-		MIT1002_04018	0.82	-2.4
4,507,024	-		MIT1002_04018	0.82	-2.3
4,507,038	+		MIT1002_04018	0.82	+0.1
4,507,146	+		MIT1002_04018	0.87	-1.3
4,507,149	-		MIT1002_04018	0.87	-0.5
4,507,187	-		MIT1002_04018	0.88	+0.3
4,507,201	+		MIT1002_04018	0.89	-0.0
4,507,263	+				-1.6
4,507,288	+				-0.9
4,507,294	-				+0.8
4,507,387	-				+0.5
4,507,392	-				-0.7
4,507,528	+				-0.3
4,507,533	+				-1.5
4,508,185	+				-1.8
4,508,185	+				-2.1
4,508,185	+				-1.4
4,508,185	+				-2.7
4,508,185	+				-0.6
4,508,185	+				-3.2
4,508,185	+				-0.7
4,508,185	+				-0.9
4,508,185	+				-2.1
4,508,185	+				-1.2
4,508,185	+				-1.3
4,508,185	+				-2.1
4,508,185	+				-1.8
4,508,185	+				-0.2
4,508,185	+				-2.7
4,508,185	+				-2.7
4,508,207	+				-2.5
4,508,230	-				-1.7
4,508,230	-				-0.7
4,508,243	+				-1.0
4,508,243	+				-1.4
4,508,256	-				-1.4
4,508,321	-				-0.0
4,508,398	+				+0.2
4,508,411	-				-0.2
4,508,411	-				+0.8