Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03921

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
4,396,999	+				-0.7
4,397,034	+				+1.4
4,397,035	-				+0.1
4,397,042	-				-3.3
4,397,044	+				-2.9
4,397,061	-				+0.2
4,397,069	+				+0.4
4,397,077	-				-0.3
4,397,093	+				+0.2
4,397,106	-				+1.0
4,397,115	+				+1.0
4,397,115	+				+1.4
4,397,115	+				+0.7
4,397,121	-				-0.8
4,397,121	-				+0.4
4,397,123	-				-0.4
4,397,132	+				+0.9
4,397,255	+				-0.8
4,397,256	+				+1.2
4,397,263	-				+1.0
4,397,264	-				+0.3
4,397,308	-				+0.4
4,397,423	+				-0.5
4,397,423	+				+0.2
4,397,431	-				+1.5
4,397,498	+		MIT1002_03920	0.15	-2.7
4,397,517	-		MIT1002_03920	0.18	+2.2
4,397,555	-		MIT1002_03920	0.25	-0.3
4,397,612	+		MIT1002_03920	0.35	+0.2
4,397,647	-		MIT1002_03920	0.40	-1.3
4,397,647	-		MIT1002_03920	0.40	-0.6
4,397,649	+		MIT1002_03920	0.41	+0.9
4,397,649	+		MIT1002_03920	0.41	+1.8
4,397,664	-		MIT1002_03920	0.43	+1.5
4,397,664	-		MIT1002_03920	0.43	+0.7
4,397,666	+		MIT1002_03920	0.44	+0.4
4,397,698	-		MIT1002_03920	0.49	-1.2
4,397,730	+		MIT1002_03920	0.54	+1.2
4,397,789	+		MIT1002_03920	0.64	-0.2
4,397,792	-		MIT1002_03920	0.65	+0.9
4,397,814	+		MIT1002_03920	0.69	-1.9
4,397,814	+		MIT1002_03920	0.69	-2.7
4,397,879	-		MIT1002_03920	0.80	-1.3
4,397,932	+		MIT1002_03920	0.89	-0.4
4,397,932	+		MIT1002_03920	0.89	-0.2
4,397,932	+		MIT1002_03920	0.89	+1.6
4,397,940	-				-1.0
4,397,962	-				-1.5
4,397,967	-				-1.1
4,397,967	-				-0.8
4,397,983	-				+0.6
4,397,983	-				+0.9
4,397,996	-				-2.5
4,397,996	-				-3.4
4,398,043	+				-3.6
4,398,045	+				-2.5
4,398,051	+				-3.6
4,398,053	+				-4.1
4,398,061	-				-2.3
4,398,086	-				-3.3
4,398,230	+		MIT1002_03921	0.22	-1.6
4,398,230	+		MIT1002_03921	0.22	+0.0
4,398,236	+		MIT1002_03921	0.22	-2.1
4,398,258	-		MIT1002_03921	0.24	-2.5
4,398,260	-		MIT1002_03921	0.24	-3.3
4,398,276	+		MIT1002_03921	0.26	-1.1
4,398,316	-		MIT1002_03921	0.29	-3.0
4,398,354	-		MIT1002_03921	0.33	-5.3
4,398,354	-		MIT1002_03921	0.33	-4.0
4,398,441	-		MIT1002_03921	0.41	-4.8
4,398,457	+		MIT1002_03921	0.42	-5.2
4,398,467	+		MIT1002_03921	0.43	+0.4
4,398,469	+		MIT1002_03921	0.43	-1.8
4,398,477	-		MIT1002_03921	0.44	-3.7
4,398,593	+		MIT1002_03921	0.54	-0.5
4,398,609	+		MIT1002_03921	0.56	-1.7
4,398,621	-		MIT1002_03921	0.57	-4.2
4,398,653	-		MIT1002_03921	0.60	-2.2
4,398,672	-		MIT1002_03921	0.62	-1.0
4,398,706	+		MIT1002_03921	0.65	-1.1
4,398,706	+		MIT1002_03921	0.65	-0.8
4,398,714	-		MIT1002_03921	0.65	-2.2
4,398,714	-		MIT1002_03921	0.65	-2.5
4,398,714	-		MIT1002_03921	0.65	-3.1
4,398,764	+		MIT1002_03921	0.70	+0.2
4,398,846	+		MIT1002_03921	0.77	-0.7
4,398,951	+		MIT1002_03921	0.87	-0.2
4,398,985	+		MIT1002_03921	0.90	-0.0
4,398,985	-		MIT1002_03921	0.90	-0.9
4,398,998	-				-2.8
4,399,003	-				-3.8
4,399,054	+				-4.1
4,399,057	-				-1.1
4,399,090	-				-2.1
4,399,092	+				+0.9
4,399,100	-				-1.0
4,399,135	-				+2.4
4,399,263	-				+0.2
4,399,298	+				-0.4
4,399,313	+				+0.3
4,399,316	-				+1.2
4,399,316	-				-0.9
4,399,345	+				-0.3
4,399,345	+				-1.4
4,399,350	+		MIT1002_03922	0.10	-1.4
4,399,350	+		MIT1002_03922	0.10	-0.2
4,399,353	-		MIT1002_03922	0.11	+1.6
4,399,375	-		MIT1002_03922	0.14	+0.3
4,399,414	+		MIT1002_03922	0.19	-0.4
4,399,454	+		MIT1002_03922	0.24	+0.7
4,399,454	+		MIT1002_03922	0.24	+0.6
4,399,462	-		MIT1002_03922	0.25	-1.4
4,399,538	+		MIT1002_03922	0.35	+0.9
4,399,546	-		MIT1002_03922	0.37	+2.3
4,399,579	+		MIT1002_03922	0.41	+0.4
4,399,579	+		MIT1002_03922	0.41	-0.1
4,399,579	+		MIT1002_03922	0.41	-0.7
4,399,584	+		MIT1002_03922	0.42	+0.7
4,399,584	+		MIT1002_03922	0.42	-1.7
4,399,584	+		MIT1002_03922	0.42	+1.4
4,399,584	+		MIT1002_03922	0.42	+2.3
4,399,584	+		MIT1002_03922	0.42	+1.1
4,399,584	+		MIT1002_03922	0.42	+0.4
4,399,584	+		MIT1002_03922	0.42	-2.1
4,399,584	+		MIT1002_03922	0.42	-0.4
4,399,584	+		MIT1002_03922	0.42	+0.2
4,399,584	+		MIT1002_03922	0.42	-0.9
4,399,584	+		MIT1002_03922	0.42	-1.2
4,399,584	+		MIT1002_03922	0.42	+0.4
4,399,584	+		MIT1002_03922	0.42	-0.2
4,399,584	+		MIT1002_03922	0.42	+0.2
4,399,584	+		MIT1002_03922	0.42	+0.9
4,399,584	+		MIT1002_03922	0.42	-1.1
4,399,584	+		MIT1002_03922	0.42	-0.4
4,399,584	+		MIT1002_03922	0.42	-1.0
4,399,584	+		MIT1002_03922	0.42	-1.1
4,399,586	+		MIT1002_03922	0.42	+0.1
4,399,592	-		MIT1002_03922	0.43	-0.4
4,399,592	-		MIT1002_03922	0.43	+0.6
4,399,592	-		MIT1002_03922	0.43	+1.1
4,399,592	-		MIT1002_03922	0.43	+0.6
4,399,592	-		MIT1002_03922	0.43	-0.4
4,399,592	-		MIT1002_03922	0.43	-0.8
4,399,592	-		MIT1002_03922	0.43	+0.1
4,399,592	-		MIT1002_03922	0.43	-0.5
4,399,592	-		MIT1002_03922	0.43	-3.3
4,399,592	-		MIT1002_03922	0.43	-0.5
4,399,592	-		MIT1002_03922	0.43	+0.1
4,399,592	-		MIT1002_03922	0.43	+0.3
4,399,592	-		MIT1002_03922	0.43	-1.6
4,399,592	-		MIT1002_03922	0.43	-1.1
4,399,592	-		MIT1002_03922	0.43	+0.0
4,399,592	-		MIT1002_03922	0.43	+1.1
4,399,592	-		MIT1002_03922	0.43	+0.6
4,399,604	-		MIT1002_03922	0.44	-0.7
4,399,608	+		MIT1002_03922	0.45	+1.0
4,399,652	+		MIT1002_03922	0.51	-1.3
4,399,708	-		MIT1002_03922	0.58	+1.4
4,399,729	+		MIT1002_03922	0.61	+0.8
4,399,818	+		MIT1002_03922	0.73	+1.8
4,399,818	+		MIT1002_03922	0.73	+0.5
4,399,846	+		MIT1002_03922	0.77	-0.3
4,399,855	+		MIT1002_03922	0.78	+1.8
4,399,888	+		MIT1002_03922	0.82	+0.4
4,399,927	+		MIT1002_03922	0.88	-0.5
4,399,927	+		MIT1002_03922	0.88	+0.6
4,399,940	-		MIT1002_03922	0.89	+0.6
4,399,947	+				+1.4
4,400,079	-				-1.8