Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03905 and MIT1002_03906 are separated by 158 nucleotides MIT1002_03906 and MIT1002_03907 are separated by 185 nucleotides MIT1002_03907 and MIT1002_03908 are separated by 11 nucleotides MIT1002_03908 and MIT1002_03909 are separated by 2 nucleotides
MIT1002_03905: MIT1002_03905 - Biosynthetic arginine decarboxylase, at 4,375,764 to 4,377,674
_03905
MIT1002_03906: MIT1002_03906 - hypothetical protein, at 4,377,833 to 4,378,255
_03906
MIT1002_03907: MIT1002_03907 - NAD(P) transhydrogenase subunit beta, at 4,378,441 to 4,379,829
_03907
MIT1002_03908: MIT1002_03908 - NAD(P) transhydrogenase subunit alpha, at 4,379,841 to 4,380,122
_03908
MIT1002_03909: MIT1002_03909 - NAD(P) transhydrogenase subunit alpha part 1, at 4,380,125 to 4,381,282
_03909
Position (kb) 4378
4379
4380 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4377.449 kb on - strand, within MIT1002_03905 at 4377.559 kb on - strand at 4377.634 kb on + strand at 4377.642 kb on - strand at 4377.668 kb on - strand at 4377.702 kb on + strand at 4377.702 kb on + strand at 4377.702 kb on + strand at 4377.702 kb on + strand at 4377.705 kb on - strand at 4377.710 kb on - strand at 4377.738 kb on + strand at 4377.746 kb on - strand at 4377.752 kb on + strand at 4377.752 kb on + strand at 4377.752 kb on + strand at 4377.760 kb on - strand at 4377.912 kb on - strand, within MIT1002_03906 at 4378.011 kb on + strand, within MIT1002_03906 at 4378.014 kb on - strand, within MIT1002_03906 at 4378.019 kb on + strand, within MIT1002_03906 at 4378.112 kb on + strand, within MIT1002_03906 at 4378.253 kb on + strand at 4378.253 kb on - strand at 4378.267 kb on + strand at 4378.307 kb on + strand at 4378.344 kb on - strand at 4378.357 kb on - strand at 4378.377 kb on - strand at 4378.377 kb on - strand at 4378.438 kb on + strand at 4378.438 kb on + strand at 4378.438 kb on + strand at 4378.438 kb on + strand at 4378.446 kb on - strand at 4378.446 kb on - strand at 4378.446 kb on - strand at 4378.487 kb on + strand at 4378.492 kb on + strand at 4378.492 kb on + strand at 4378.492 kb on + strand at 4378.492 kb on + strand at 4378.500 kb on - strand at 4378.500 kb on - strand at 4378.602 kb on - strand, within MIT1002_03907 at 4378.620 kb on + strand, within MIT1002_03907 at 4378.639 kb on - strand, within MIT1002_03907 at 4378.658 kb on + strand, within MIT1002_03907 at 4378.660 kb on - strand, within MIT1002_03907 at 4378.660 kb on - strand, within MIT1002_03907 at 4378.662 kb on - strand, within MIT1002_03907 at 4378.703 kb on + strand, within MIT1002_03907 at 4378.710 kb on + strand, within MIT1002_03907 at 4378.710 kb on + strand, within MIT1002_03907 at 4378.718 kb on - strand, within MIT1002_03907 at 4378.718 kb on - strand, within MIT1002_03907 at 4378.718 kb on - strand, within MIT1002_03907 at 4378.718 kb on - strand, within MIT1002_03907 at 4378.800 kb on - strand, within MIT1002_03907 at 4378.802 kb on - strand, within MIT1002_03907 at 4378.908 kb on + strand, within MIT1002_03907 at 4378.914 kb on - strand, within MIT1002_03907 at 4378.914 kb on - strand, within MIT1002_03907 at 4378.998 kb on - strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.041 kb on + strand, within MIT1002_03907 at 4379.048 kb on + strand, within MIT1002_03907 at 4379.049 kb on - strand, within MIT1002_03907 at 4379.049 kb on - strand, within MIT1002_03907 at 4379.120 kb on - strand, within MIT1002_03907 at 4379.175 kb on - strand, within MIT1002_03907 at 4379.210 kb on - strand, within MIT1002_03907 at 4379.226 kb on + strand, within MIT1002_03907 at 4379.226 kb on + strand, within MIT1002_03907 at 4379.278 kb on - strand, within MIT1002_03907 at 4379.388 kb on + strand, within MIT1002_03907 at 4379.406 kb on - strand, within MIT1002_03907 at 4379.519 kb on + strand, within MIT1002_03907 at 4379.527 kb on + strand, within MIT1002_03907 at 4379.550 kb on - strand, within MIT1002_03907 at 4379.574 kb on + strand, within MIT1002_03907 at 4379.687 kb on - strand, within MIT1002_03907 at 4379.794 kb on - strand at 4379.803 kb on + strand at 4379.819 kb on + strand at 4379.837 kb on - strand at 4379.862 kb on + strand at 4379.942 kb on - strand, within MIT1002_03908 at 4379.986 kb on - strand, within MIT1002_03908 at 4380.024 kb on + strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.032 kb on - strand, within MIT1002_03908 at 4380.131 kb on - strand at 4380.132 kb on + strand at 4380.154 kb on - strand at 4380.220 kb on + strand at 4380.269 kb on - strand, within MIT1002_03909 at 4380.287 kb on - strand, within MIT1002_03909 at 4380.308 kb on + strand, within MIT1002_03909 at 4380.337 kb on + strand, within MIT1002_03909 at 4380.337 kb on + strand, within MIT1002_03909 at 4380.345 kb on - strand, within MIT1002_03909 at 4380.385 kb on - strand, within MIT1002_03909 at 4380.472 kb on - strand, within MIT1002_03909 at 4380.495 kb on + strand, within MIT1002_03909 at 4380.495 kb on + strand, within MIT1002_03909 at 4380.649 kb on - strand, within MIT1002_03909 at 4380.666 kb on + strand, within MIT1002_03909 at 4380.669 kb on - strand, within MIT1002_03909 at 4380.817 kb on + strand, within MIT1002_03909
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 4,377,449 - MIT1002_03905 0.88 +0.1 4,377,559 - +0.4 4,377,634 + -0.5 4,377,642 - -1.5 4,377,668 - -0.4 4,377,702 + +0.9 4,377,702 + -2.3 4,377,702 + -1.7 4,377,702 + -1.4 4,377,705 - +0.6 4,377,710 - -0.3 4,377,738 + -1.2 4,377,746 - -0.3 4,377,752 + +1.2 4,377,752 + -1.0 4,377,752 + -1.0 4,377,760 - -0.9 4,377,912 - MIT1002_03906 0.19 -0.4 4,378,011 + MIT1002_03906 0.42 -0.3 4,378,014 - MIT1002_03906 0.43 -1.7 4,378,019 + MIT1002_03906 0.44 -0.2 4,378,112 + MIT1002_03906 0.66 -1.2 4,378,253 + -1.6 4,378,253 - -0.2 4,378,267 + +1.1 4,378,307 + -0.9 4,378,344 - +0.4 4,378,357 - +0.2 4,378,377 - +0.0 4,378,377 - -0.6 4,378,438 + -1.2 4,378,438 + -1.1 4,378,438 + -0.2 4,378,438 + -2.4 4,378,446 - +0.3 4,378,446 - -0.2 4,378,446 - +0.2 4,378,487 + -5.6 4,378,492 + -3.1 4,378,492 + -4.7 4,378,492 + -5.6 4,378,492 + -2.3 4,378,500 - -3.3 4,378,500 - -3.1 4,378,602 - MIT1002_03907 0.12 -6.0 4,378,620 + MIT1002_03907 0.13 -3.0 4,378,639 - MIT1002_03907 0.14 -3.2 4,378,658 + MIT1002_03907 0.16 -4.1 4,378,660 - MIT1002_03907 0.16 -4.5 4,378,660 - MIT1002_03907 0.16 -2.4 4,378,662 - MIT1002_03907 0.16 -3.6 4,378,703 + MIT1002_03907 0.19 -3.4 4,378,710 + MIT1002_03907 0.19 -4.7 4,378,710 + MIT1002_03907 0.19 -4.1 4,378,718 - MIT1002_03907 0.20 -3.4 4,378,718 - MIT1002_03907 0.20 -2.2 4,378,718 - MIT1002_03907 0.20 -2.1 4,378,718 - MIT1002_03907 0.20 -2.0 4,378,800 - MIT1002_03907 0.26 -3.0 4,378,802 - MIT1002_03907 0.26 -4.4 4,378,908 + MIT1002_03907 0.34 -3.6 4,378,914 - MIT1002_03907 0.34 -5.1 4,378,914 - MIT1002_03907 0.34 -4.6 4,378,998 - MIT1002_03907 0.40 -3.7 4,379,041 + MIT1002_03907 0.43 -5.2 4,379,041 + MIT1002_03907 0.43 -5.0 4,379,041 + MIT1002_03907 0.43 -3.3 4,379,041 + MIT1002_03907 0.43 -4.1 4,379,041 + MIT1002_03907 0.43 -3.9 4,379,041 + MIT1002_03907 0.43 -4.3 4,379,048 + MIT1002_03907 0.44 -4.8 4,379,049 - MIT1002_03907 0.44 -5.1 4,379,049 - MIT1002_03907 0.44 -4.4 4,379,120 - MIT1002_03907 0.49 -3.2 4,379,175 - MIT1002_03907 0.53 -4.1 4,379,210 - MIT1002_03907 0.55 -0.4 4,379,226 + MIT1002_03907 0.57 -2.0 4,379,226 + MIT1002_03907 0.57 -2.2 4,379,278 - MIT1002_03907 0.60 -3.1 4,379,388 + MIT1002_03907 0.68 -3.4 4,379,406 - MIT1002_03907 0.69 -3.9 4,379,519 + MIT1002_03907 0.78 -0.8 4,379,527 + MIT1002_03907 0.78 -4.2 4,379,550 - MIT1002_03907 0.80 -3.8 4,379,574 + MIT1002_03907 0.82 -3.7 4,379,687 - MIT1002_03907 0.90 -6.2 4,379,794 - -1.4 4,379,803 + -2.8 4,379,819 + -4.4 4,379,837 - -1.8 4,379,862 + -2.0 4,379,942 - MIT1002_03908 0.36 -4.2 4,379,986 - MIT1002_03908 0.51 -3.4 4,380,024 + MIT1002_03908 0.65 -1.0 4,380,032 - MIT1002_03908 0.68 -5.7 4,380,032 - MIT1002_03908 0.68 -3.7 4,380,032 - MIT1002_03908 0.68 -3.3 4,380,032 - MIT1002_03908 0.68 -4.2 4,380,032 - MIT1002_03908 0.68 -4.4 4,380,032 - MIT1002_03908 0.68 -5.0 4,380,131 - -5.5 4,380,132 + -1.6 4,380,154 - -3.3 4,380,220 + -0.4 4,380,269 - MIT1002_03909 0.12 -0.9 4,380,287 - MIT1002_03909 0.14 -2.6 4,380,308 + MIT1002_03909 0.16 -3.3 4,380,337 + MIT1002_03909 0.18 -3.1 4,380,337 + MIT1002_03909 0.18 -5.0 4,380,345 - MIT1002_03909 0.19 -3.8 4,380,385 - MIT1002_03909 0.22 -2.7 4,380,472 - MIT1002_03909 0.30 -4.3 4,380,495 + MIT1002_03909 0.32 -5.1 4,380,495 + MIT1002_03909 0.32 -4.8 4,380,649 - MIT1002_03909 0.45 -4.2 4,380,666 + MIT1002_03909 0.47 -1.9 4,380,669 - MIT1002_03909 0.47 -2.5 4,380,817 + MIT1002_03909 0.60 -3.9
Or see this region's nucleotide sequence