Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03884

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
4,347,371	+		MIT1002_03882	0.81	+0.2
4,347,408	-				+0.3
4,347,435	+				+1.1
4,347,443	-				+0.0
4,347,443	-				+0.0
4,347,443	-				-0.9
4,347,443	-				+2.0
4,347,446	+				-1.9
4,347,729	+				-2.5
4,347,769	-				+0.1
4,347,769	-				-0.7
4,347,769	-				+1.2
4,347,818	+				+0.5
4,347,818	+				+0.5
4,347,818	+				+1.7
4,347,826	-				-1.3
4,347,885	-		MIT1002_03883	0.15	-0.2
4,347,887	+		MIT1002_03883	0.16	+1.1
4,347,895	-		MIT1002_03883	0.17	+0.2
4,347,928	-		MIT1002_03883	0.23	+1.3
4,347,928	-		MIT1002_03883	0.23	+0.4
4,347,952	-		MIT1002_03883	0.28	+0.1
4,347,998	-		MIT1002_03883	0.37	+1.2
4,348,060	+		MIT1002_03883	0.48	-1.1
4,348,067	-		MIT1002_03883	0.50	-1.9
4,348,067	-		MIT1002_03883	0.50	+0.4
4,348,076	-		MIT1002_03883	0.52	+0.1
4,348,297	+				-0.0
4,348,361	+				-0.0
4,348,361	+				-3.0
4,348,361	+				-0.1
4,348,367	+				-0.4
4,348,367	+				-0.5
4,348,375	-				-1.5
4,348,375	-				+0.8
4,348,392	-				+0.3
4,348,398	-				-0.8
4,348,439	+		MIT1002_03884	0.15	-0.3
4,348,468	+		MIT1002_03884	0.20	-0.5
4,348,476	-		MIT1002_03884	0.22	-0.4
4,348,478	+		MIT1002_03884	0.22	+0.3
4,348,479	+		MIT1002_03884	0.22	+0.0
4,348,545	-		MIT1002_03884	0.34	+0.3
4,348,600	-		MIT1002_03884	0.43	+0.1
4,348,614	+		MIT1002_03884	0.46	+0.6
4,348,614	+		MIT1002_03884	0.46	-0.2
4,348,614	-		MIT1002_03884	0.46	+0.7
4,348,622	-		MIT1002_03884	0.47	+0.3
4,348,622	-		MIT1002_03884	0.47	-0.0
4,348,622	-		MIT1002_03884	0.47	+0.5
4,348,622	-		MIT1002_03884	0.47	+0.3
4,348,646	+		MIT1002_03884	0.51	+0.3
4,348,696	+		MIT1002_03884	0.60	+0.2
4,348,785	+		MIT1002_03884	0.76	-2.0
4,348,785	-		MIT1002_03884	0.76	+0.5
4,348,785	-		MIT1002_03884	0.76	+0.3
4,348,802	+		MIT1002_03884	0.79	+0.5
4,348,815	+		MIT1002_03884	0.81	-1.3
4,348,886	+				-0.7
4,348,894	-				-0.4
4,348,899	+				+0.2
4,349,018	-				-4.0
4,349,018	-				-4.6
4,349,057	-				-5.0
4,349,101	-				-2.3
4,349,152	+		MIT1002_03885	0.12	-2.5
4,349,160	-		MIT1002_03885	0.13	-4.5
4,349,173	+		MIT1002_03885	0.14	-4.6
4,349,173	+		MIT1002_03885	0.14	-3.3
4,349,181	-		MIT1002_03885	0.14	-3.5
4,349,181	-		MIT1002_03885	0.14	-3.9
4,349,188	+		MIT1002_03885	0.15	-1.0
4,349,254	+		MIT1002_03885	0.20	-3.9
4,349,468	+		MIT1002_03885	0.37	-5.4
4,349,468	+		MIT1002_03885	0.37	-2.8
4,349,469	-		MIT1002_03885	0.37	-4.6
4,349,499	-		MIT1002_03885	0.39	-4.7
4,349,560	+		MIT1002_03885	0.44	-1.3
4,349,585	+		MIT1002_03885	0.46	-4.5
4,349,684	+		MIT1002_03885	0.53	-4.8
4,349,756	-		MIT1002_03885	0.59	-1.3
4,349,756	-		MIT1002_03885	0.59	-2.3
4,349,805	-		MIT1002_03885	0.63	-3.8
4,349,855	+		MIT1002_03885	0.66	-1.3
4,349,873	-		MIT1002_03885	0.68	-2.6
4,349,892	+		MIT1002_03885	0.69	-3.5