Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03843 and MIT1002_03844 are separated by 1 nucleotides MIT1002_03844 and MIT1002_03845 are separated by 19 nucleotides
MIT1002_03843: MIT1002_03843 - Galactose operon repressor, at 4,304,299 to 4,305,300
_03843
MIT1002_03844: MIT1002_03844 - D-xylose transporter, at 4,305,302 to 4,306,870
_03844
MIT1002_03845: MIT1002_03845 - Multidrug resistance ABC transporter ATP-binding and permease protein, at 4,306,890 to 4,308,479
_03845
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4304.325 kb on - strand at 4304.335 kb on - strand at 4304.436 kb on + strand, within MIT1002_03843 at 4304.437 kb on - strand, within MIT1002_03843 at 4304.495 kb on + strand, within MIT1002_03843 at 4304.495 kb on + strand, within MIT1002_03843 at 4304.495 kb on + strand, within MIT1002_03843 at 4304.503 kb on - strand, within MIT1002_03843 at 4304.503 kb on - strand, within MIT1002_03843 at 4304.510 kb on + strand, within MIT1002_03843 at 4304.686 kb on - strand, within MIT1002_03843 at 4304.696 kb on + strand, within MIT1002_03843 at 4304.704 kb on - strand, within MIT1002_03843 at 4304.706 kb on - strand, within MIT1002_03843 at 4304.760 kb on - strand, within MIT1002_03843 at 4304.775 kb on - strand, within MIT1002_03843 at 4304.775 kb on - strand, within MIT1002_03843 at 4304.775 kb on - strand, within MIT1002_03843 at 4304.889 kb on + strand, within MIT1002_03843 at 4304.915 kb on + strand, within MIT1002_03843 at 4304.922 kb on - strand, within MIT1002_03843 at 4305.282 kb on + strand at 4305.316 kb on + strand at 4305.328 kb on + strand at 4305.328 kb on + strand at 4305.336 kb on - strand at 4305.336 kb on - strand at 4305.348 kb on + strand at 4305.465 kb on + strand, within MIT1002_03844 at 4305.578 kb on + strand, within MIT1002_03844 at 4305.586 kb on - strand, within MIT1002_03844 at 4305.599 kb on + strand, within MIT1002_03844 at 4305.628 kb on - strand, within MIT1002_03844 at 4305.683 kb on + strand, within MIT1002_03844 at 4305.735 kb on + strand, within MIT1002_03844 at 4305.735 kb on + strand, within MIT1002_03844 at 4305.768 kb on - strand, within MIT1002_03844 at 4305.811 kb on - strand, within MIT1002_03844 at 4305.854 kb on - strand, within MIT1002_03844 at 4305.866 kb on + strand, within MIT1002_03844 at 4305.903 kb on + strand, within MIT1002_03844 at 4305.903 kb on + strand, within MIT1002_03844 at 4305.903 kb on + strand, within MIT1002_03844 at 4305.911 kb on - strand, within MIT1002_03844 at 4305.950 kb on + strand, within MIT1002_03844 at 4305.974 kb on + strand, within MIT1002_03844 at 4305.974 kb on + strand, within MIT1002_03844 at 4305.982 kb on - strand, within MIT1002_03844 at 4305.982 kb on - strand, within MIT1002_03844 at 4305.982 kb on - strand, within MIT1002_03844 at 4305.982 kb on - strand, within MIT1002_03844 at 4305.982 kb on - strand, within MIT1002_03844 at 4305.998 kb on + strand, within MIT1002_03844 at 4306.060 kb on + strand, within MIT1002_03844 at 4306.068 kb on - strand, within MIT1002_03844 at 4306.068 kb on - strand, within MIT1002_03844 at 4306.092 kb on + strand, within MIT1002_03844 at 4306.097 kb on + strand, within MIT1002_03844 at 4306.175 kb on + strand, within MIT1002_03844 at 4306.213 kb on - strand, within MIT1002_03844 at 4306.219 kb on + strand, within MIT1002_03844 at 4306.335 kb on + strand, within MIT1002_03844 at 4306.336 kb on - strand, within MIT1002_03844 at 4306.353 kb on + strand, within MIT1002_03844 at 4306.421 kb on + strand, within MIT1002_03844 at 4306.468 kb on + strand, within MIT1002_03844 at 4306.473 kb on + strand, within MIT1002_03844 at 4306.486 kb on - strand, within MIT1002_03844 at 4306.486 kb on - strand, within MIT1002_03844 at 4306.538 kb on - strand, within MIT1002_03844 at 4306.596 kb on + strand, within MIT1002_03844 at 4306.603 kb on - strand, within MIT1002_03844 at 4306.609 kb on + strand, within MIT1002_03844 at 4306.612 kb on - strand, within MIT1002_03844 at 4306.615 kb on - strand, within MIT1002_03844 at 4306.735 kb on + strand at 4306.735 kb on + strand at 4306.863 kb on + strand at 4306.870 kb on + strand at 4306.875 kb on + strand at 4306.880 kb on + strand at 4306.883 kb on - strand at 4306.916 kb on - strand at 4306.916 kb on - strand at 4306.918 kb on + strand at 4306.918 kb on + strand at 4306.918 kb on + strand at 4306.918 kb on + strand at 4306.933 kb on - strand at 4307.028 kb on + strand at 4307.044 kb on + strand at 4307.056 kb on + strand, within MIT1002_03845 at 4307.062 kb on - strand, within MIT1002_03845 at 4307.062 kb on - strand, within MIT1002_03845 at 4307.073 kb on + strand, within MIT1002_03845 at 4307.109 kb on + strand, within MIT1002_03845 at 4307.117 kb on - strand, within MIT1002_03845 at 4307.147 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.149 kb on + strand, within MIT1002_03845 at 4307.155 kb on - strand, within MIT1002_03845 at 4307.157 kb on - strand, within MIT1002_03845 at 4307.157 kb on - strand, within MIT1002_03845 at 4307.157 kb on - strand, within MIT1002_03845 at 4307.228 kb on + strand, within MIT1002_03845 at 4307.312 kb on + strand, within MIT1002_03845 at 4307.376 kb on - strand, within MIT1002_03845 at 4307.386 kb on + strand, within MIT1002_03845 at 4307.386 kb on + strand, within MIT1002_03845 at 4307.481 kb on + strand, within MIT1002_03845 at 4307.530 kb on + strand, within MIT1002_03845 at 4307.572 kb on + strand, within MIT1002_03845 at 4307.582 kb on + strand, within MIT1002_03845 at 4307.621 kb on + strand, within MIT1002_03845 at 4307.662 kb on + strand, within MIT1002_03845 at 4307.728 kb on + strand, within MIT1002_03845 at 4307.728 kb on + strand, within MIT1002_03845 at 4307.775 kb on + strand, within MIT1002_03845 at 4307.839 kb on - strand, within MIT1002_03845 at 4307.848 kb on + strand, within MIT1002_03845 at 4307.848 kb on + strand, within MIT1002_03845 at 4307.848 kb on + strand, within MIT1002_03845 at 4307.856 kb on - strand, within MIT1002_03845 at 4307.856 kb on - strand, within MIT1002_03845 at 4307.868 kb on - strand, within MIT1002_03845
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 4,304,325 - -1.8 4,304,335 - +0.1 4,304,436 + MIT1002_03843 0.14 -1.9 4,304,437 - MIT1002_03843 0.14 -3.7 4,304,495 + MIT1002_03843 0.20 -1.6 4,304,495 + MIT1002_03843 0.20 +0.5 4,304,495 + MIT1002_03843 0.20 -0.9 4,304,503 - MIT1002_03843 0.20 -0.7 4,304,503 - MIT1002_03843 0.20 +0.2 4,304,510 + MIT1002_03843 0.21 +1.8 4,304,686 - MIT1002_03843 0.39 -0.8 4,304,696 + MIT1002_03843 0.40 -1.5 4,304,704 - MIT1002_03843 0.40 -1.6 4,304,706 - MIT1002_03843 0.41 -2.2 4,304,760 - MIT1002_03843 0.46 -1.4 4,304,775 - MIT1002_03843 0.48 -0.0 4,304,775 - MIT1002_03843 0.48 -3.7 4,304,775 - MIT1002_03843 0.48 -1.9 4,304,889 + MIT1002_03843 0.59 -3.6 4,304,915 + MIT1002_03843 0.61 -0.3 4,304,922 - MIT1002_03843 0.62 -2.6 4,305,282 + +1.3 4,305,316 + +0.2 4,305,328 + -1.1 4,305,328 + +0.2 4,305,336 - -1.5 4,305,336 - +0.0 4,305,348 + -0.0 4,305,465 + MIT1002_03844 0.10 +0.7 4,305,578 + MIT1002_03844 0.18 +0.9 4,305,586 - MIT1002_03844 0.18 -0.3 4,305,599 + MIT1002_03844 0.19 -0.7 4,305,628 - MIT1002_03844 0.21 -0.1 4,305,683 + MIT1002_03844 0.24 -0.4 4,305,735 + MIT1002_03844 0.28 +0.3 4,305,735 + MIT1002_03844 0.28 -1.6 4,305,768 - MIT1002_03844 0.30 +0.9 4,305,811 - MIT1002_03844 0.32 -0.8 4,305,854 - MIT1002_03844 0.35 -0.0 4,305,866 + MIT1002_03844 0.36 +0.9 4,305,903 + MIT1002_03844 0.38 +0.9 4,305,903 + MIT1002_03844 0.38 +0.1 4,305,903 + MIT1002_03844 0.38 +0.1 4,305,911 - MIT1002_03844 0.39 -1.5 4,305,950 + MIT1002_03844 0.41 +0.1 4,305,974 + MIT1002_03844 0.43 +1.1 4,305,974 + MIT1002_03844 0.43 +0.6 4,305,982 - MIT1002_03844 0.43 -0.8 4,305,982 - MIT1002_03844 0.43 +1.7 4,305,982 - MIT1002_03844 0.43 -1.5 4,305,982 - MIT1002_03844 0.43 +1.8 4,305,982 - MIT1002_03844 0.43 +0.1 4,305,998 + MIT1002_03844 0.44 -0.9 4,306,060 + MIT1002_03844 0.48 +0.6 4,306,068 - MIT1002_03844 0.49 -1.5 4,306,068 - MIT1002_03844 0.49 -0.6 4,306,092 + MIT1002_03844 0.50 -0.2 4,306,097 + MIT1002_03844 0.51 -0.5 4,306,175 + MIT1002_03844 0.56 -0.4 4,306,213 - MIT1002_03844 0.58 +0.3 4,306,219 + MIT1002_03844 0.58 -1.0 4,306,335 + MIT1002_03844 0.66 +0.5 4,306,336 - MIT1002_03844 0.66 -0.8 4,306,353 + MIT1002_03844 0.67 +1.3 4,306,421 + MIT1002_03844 0.71 +2.3 4,306,468 + MIT1002_03844 0.74 +0.5 4,306,473 + MIT1002_03844 0.75 +0.8 4,306,486 - MIT1002_03844 0.75 +0.4 4,306,486 - MIT1002_03844 0.75 -1.0 4,306,538 - MIT1002_03844 0.79 -2.3 4,306,596 + MIT1002_03844 0.82 +1.3 4,306,603 - MIT1002_03844 0.83 -1.0 4,306,609 + MIT1002_03844 0.83 -0.1 4,306,612 - MIT1002_03844 0.83 +0.1 4,306,615 - MIT1002_03844 0.84 -0.5 4,306,735 + +0.0 4,306,735 + -0.9 4,306,863 + +0.2 4,306,870 + -0.1 4,306,875 + +1.2 4,306,880 + -0.9 4,306,883 - +1.7 4,306,916 - +0.2 4,306,916 - -0.1 4,306,918 + +0.1 4,306,918 + -0.0 4,306,918 + -0.4 4,306,918 + -0.4 4,306,933 - +1.8 4,307,028 + +0.9 4,307,044 + -0.7 4,307,056 + MIT1002_03845 0.10 +1.2 4,307,062 - MIT1002_03845 0.11 +0.3 4,307,062 - MIT1002_03845 0.11 -0.7 4,307,073 + MIT1002_03845 0.12 +0.4 4,307,109 + MIT1002_03845 0.14 -0.2 4,307,117 - MIT1002_03845 0.14 -1.3 4,307,147 + MIT1002_03845 0.16 +0.1 4,307,149 + MIT1002_03845 0.16 -0.3 4,307,149 + MIT1002_03845 0.16 +0.1 4,307,149 + MIT1002_03845 0.16 -0.0 4,307,149 + MIT1002_03845 0.16 -1.6 4,307,149 + MIT1002_03845 0.16 -2.3 4,307,149 + MIT1002_03845 0.16 +0.1 4,307,155 - MIT1002_03845 0.17 +1.8 4,307,157 - MIT1002_03845 0.17 +0.1 4,307,157 - MIT1002_03845 0.17 +2.3 4,307,157 - MIT1002_03845 0.17 -0.3 4,307,228 + MIT1002_03845 0.21 +0.6 4,307,312 + MIT1002_03845 0.27 +0.1 4,307,376 - MIT1002_03845 0.31 -0.3 4,307,386 + MIT1002_03845 0.31 -2.8 4,307,386 + MIT1002_03845 0.31 -0.2 4,307,481 + MIT1002_03845 0.37 +0.4 4,307,530 + MIT1002_03845 0.40 +0.7 4,307,572 + MIT1002_03845 0.43 -0.2 4,307,582 + MIT1002_03845 0.44 +0.2 4,307,621 + MIT1002_03845 0.46 +0.2 4,307,662 + MIT1002_03845 0.49 +0.2 4,307,728 + MIT1002_03845 0.53 -0.6 4,307,728 + MIT1002_03845 0.53 -1.0 4,307,775 + MIT1002_03845 0.56 +1.2 4,307,839 - MIT1002_03845 0.60 -0.7 4,307,848 + MIT1002_03845 0.60 +0.1 4,307,848 + MIT1002_03845 0.60 -0.7 4,307,848 + MIT1002_03845 0.60 +0.8 4,307,856 - MIT1002_03845 0.61 -0.4 4,307,856 - MIT1002_03845 0.61 +0.8 4,307,868 - MIT1002_03845 0.62 +0.8
Or see this region's nucleotide sequence