Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03039

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
3,388,326	-		MIT1002_03038	0.71	+0.6
3,388,363	+		MIT1002_03038	0.72	-0.4
3,388,589	+		MIT1002_03038	0.79	-0.4
3,388,590	+		MIT1002_03038	0.79	+0.9
3,388,603	-		MIT1002_03038	0.79	-1.5
3,388,636	+		MIT1002_03038	0.80	-3.8
3,388,644	-		MIT1002_03038	0.80	+0.1
3,388,646	-		MIT1002_03038	0.80	+0.2
3,388,673	+		MIT1002_03038	0.81	+2.6
3,388,761	+		MIT1002_03038	0.84	-0.2
3,388,761	+		MIT1002_03038	0.84	-0.1
3,388,761	+		MIT1002_03038	0.84	-1.7
3,388,761	+		MIT1002_03038	0.84	+0.1
3,388,769	-		MIT1002_03038	0.84	-0.2
3,388,769	-		MIT1002_03038	0.84	+0.3
3,388,769	-		MIT1002_03038	0.84	+0.5
3,388,805	-		MIT1002_03038	0.85	+0.3
3,388,807	+		MIT1002_03038	0.85	+1.4
3,388,812	+		MIT1002_03038	0.85	+0.1
3,388,815	-		MIT1002_03038	0.86	+0.2
3,388,815	-		MIT1002_03038	0.86	-1.6
3,388,836	+		MIT1002_03038	0.86	+2.3
3,388,886	-		MIT1002_03038	0.88	-0.6
3,388,909	+		MIT1002_03038	0.88	-0.1
3,388,951	-		MIT1002_03038	0.90	+0.4
3,388,965	+				+3.1
3,388,985	-				-0.3
3,388,985	-				-0.2
3,389,041	+				+1.1
3,389,048	+				+1.5
3,389,059	-				-1.5
3,389,080	-				+0.2
3,389,171	+				+1.1
3,389,210	+				+0.5
3,389,218	-				+0.4
3,389,225	+				+0.8
3,389,230	-				-0.2
3,389,230	-				-0.6
3,389,248	+				-0.1
3,389,296	-				+0.9
3,389,299	-				-0.9
3,389,309	-				+0.8
3,389,340	+				-0.7
3,389,387	-				+0.1
3,389,390	+				+1.2
3,389,398	-				+0.2
3,389,412	+				-0.8
3,389,422	+				+0.5
3,389,427	+				+0.4
3,389,427	+				+1.0
3,389,435	-				+0.3
3,389,455	-				+0.8
3,389,535	-		MIT1002_03039	0.14	+1.9
3,389,719	-		MIT1002_03039	0.25	+0.3
3,389,856	+		MIT1002_03039	0.33	-0.3
3,389,856	+		MIT1002_03039	0.33	-0.3
3,389,856	+		MIT1002_03039	0.33	-0.9
3,389,858	-		MIT1002_03039	0.33	+0.2
3,389,864	-		MIT1002_03039	0.33	-0.4
3,389,864	-		MIT1002_03039	0.33	-0.0
3,389,898	+		MIT1002_03039	0.35	-0.6
3,389,904	-		MIT1002_03039	0.35	-1.4
3,389,913	+		MIT1002_03039	0.36	+0.2
3,389,957	+		MIT1002_03039	0.38	-0.8
3,389,965	-		MIT1002_03039	0.39	-0.7
3,389,965	-		MIT1002_03039	0.39	+0.5
3,389,967	+		MIT1002_03039	0.39	-1.2
3,390,042	+		MIT1002_03039	0.43	-0.3
3,390,050	-		MIT1002_03039	0.44	+0.4
3,390,050	-		MIT1002_03039	0.44	+1.4
3,390,050	-		MIT1002_03039	0.44	-0.8
3,390,083	-		MIT1002_03039	0.45	-0.9
3,390,189	+		MIT1002_03039	0.51	+0.1
3,390,197	-		MIT1002_03039	0.52	-0.1
3,390,199	+		MIT1002_03039	0.52	+0.3
3,390,199	+		MIT1002_03039	0.52	+0.2
3,390,207	-		MIT1002_03039	0.52	+1.0
3,390,209	+		MIT1002_03039	0.53	-0.8
3,390,209	+		MIT1002_03039	0.53	+0.5
3,390,211	+		MIT1002_03039	0.53	+0.1
3,390,217	-		MIT1002_03039	0.53	-0.4
3,390,217	-		MIT1002_03039	0.53	+0.8
3,390,217	-		MIT1002_03039	0.53	+0.1
3,390,219	-		MIT1002_03039	0.53	+0.4
3,390,229	+		MIT1002_03039	0.54	+0.6
3,390,229	+		MIT1002_03039	0.54	+0.8
3,390,229	+		MIT1002_03039	0.54	-1.2
3,390,237	-		MIT1002_03039	0.54	+0.5
3,390,237	-		MIT1002_03039	0.54	-0.3
3,390,271	+		MIT1002_03039	0.56	+0.5
3,390,286	-		MIT1002_03039	0.57	+0.1
3,390,369	+		MIT1002_03039	0.62	-0.9
3,390,377	+		MIT1002_03039	0.62	-0.5
3,390,377	+		MIT1002_03039	0.62	-2.1
3,390,385	+		MIT1002_03039	0.63	+1.1
3,390,467	+		MIT1002_03039	0.67	+0.5
3,390,475	-		MIT1002_03039	0.68	-2.3
3,390,477	+		MIT1002_03039	0.68	+0.2
3,390,520	-		MIT1002_03039	0.70	+0.6
3,390,565	-		MIT1002_03039	0.73	+0.2
3,390,575	-		MIT1002_03039	0.73	+0.6
3,390,624	-		MIT1002_03039	0.76	-0.2
3,390,627	+		MIT1002_03039	0.76	+0.6
3,390,634	-		MIT1002_03039	0.77	+0.1
3,390,635	-		MIT1002_03039	0.77	+0.9
3,390,656	+		MIT1002_03039	0.78	+0.4
3,390,659	+		MIT1002_03039	0.78	+0.3
3,390,664	-		MIT1002_03039	0.78	-0.2
3,390,667	-		MIT1002_03039	0.79	+1.2
3,390,692	+		MIT1002_03039	0.80	+0.7
3,390,706	-		MIT1002_03039	0.81	-0.2
3,390,765	-		MIT1002_03039	0.84	+0.5
3,390,785	-		MIT1002_03039	0.85	-0.0
3,390,799	+		MIT1002_03039	0.86	-1.8
3,390,826	-		MIT1002_03039	0.88	-0.7
3,390,883	+				-0.0
3,390,889	+				-0.1
3,390,923	-				+1.4
3,390,939	-				+0.8
3,390,946	-				-0.8
3,390,992	+				+0.1
3,390,992	+				-1.1
3,391,000	-				+0.3
3,391,015	+				+0.7
3,391,169	+				+1.1
3,391,209	+		MIT1002_03040	0.11	+0.2
3,391,209	+		MIT1002_03040	0.11	-0.7
3,391,210	+		MIT1002_03040	0.11	-0.4
3,391,217	-		MIT1002_03040	0.12	+1.5
3,391,292	+		MIT1002_03040	0.17	+0.5
3,391,489	+		MIT1002_03040	0.31	-0.1
3,391,603	+		MIT1002_03040	0.39	+0.6
3,391,605	-		MIT1002_03040	0.39	-1.0
3,391,605	-		MIT1002_03040	0.39	-0.6
3,391,680	+		MIT1002_03040	0.44	+0.3
3,391,680	+		MIT1002_03040	0.44	-1.2
3,391,688	-		MIT1002_03040	0.45	+0.8
3,391,729	-		MIT1002_03040	0.48	+0.0
3,391,743	+		MIT1002_03040	0.49	-0.9
3,391,756	-		MIT1002_03040	0.50	+0.5
3,391,775	-		MIT1002_03040	0.51	-0.3
3,391,889	-		MIT1002_03040	0.59	+0.5
3,391,935	+		MIT1002_03040	0.62	-0.3
3,391,985	+		MIT1002_03040	0.66	+0.7
3,391,985	+		MIT1002_03040	0.66	-0.3
3,391,993	-		MIT1002_03040	0.66	-1.3
3,391,993	-		MIT1002_03040	0.66	+0.2
3,391,993	-		MIT1002_03040	0.66	+1.2
3,391,993	-		MIT1002_03040	0.66	-0.2
3,391,995	+		MIT1002_03040	0.66	-0.6
3,391,995	+		MIT1002_03040	0.66	-1.1
3,391,995	+		MIT1002_03040	0.66	-0.7
3,392,003	-		MIT1002_03040	0.67	+0.7
3,392,003	-		MIT1002_03040	0.67	+0.2
3,392,015	+		MIT1002_03040	0.68	+0.8
3,392,015	+		MIT1002_03040	0.68	-0.1
3,392,015	+		MIT1002_03040	0.68	+0.8
3,392,017	-		MIT1002_03040	0.68	+0.8
3,392,023	-		MIT1002_03040	0.68	+0.1
3,392,023	-		MIT1002_03040	0.68	+0.2