Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02942

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
3,271,344	-		MIT1002_02941	0.12	+0.5
3,271,352	+		MIT1002_02941	0.13	+0.7
3,271,354	-		MIT1002_02941	0.13	-0.3
3,271,400	+		MIT1002_02941	0.18	-1.6
3,271,469	-		MIT1002_02941	0.25	-0.5
3,271,527	+		MIT1002_02941	0.31	-0.0
3,271,566	+		MIT1002_02941	0.35	-0.2
3,271,664	+		MIT1002_02941	0.46	+0.1
3,271,778	+		MIT1002_02941	0.58	-0.1
3,271,824	+		MIT1002_02941	0.62	+0.4
3,271,832	-		MIT1002_02941	0.63	+1.1
3,272,013	-		MIT1002_02941	0.82	-0.2
3,272,062	+		MIT1002_02941	0.87	-1.1
3,272,065	-		MIT1002_02941	0.88	-0.3
3,272,083	+		MIT1002_02941	0.90	+0.6
3,272,083	+		MIT1002_02941	0.90	-0.9
3,272,100	+				+0.7
3,272,208	+				+0.5
3,272,208	+				+1.5
3,272,213	-				+0.5
3,272,323	+				-0.5
3,272,344	-				-1.7
3,272,349	-				+1.5
3,272,354	-				-0.2
3,272,403	+				+1.2
3,272,411	-				+0.3
3,272,520	+		MIT1002_02942	0.15	+0.8
3,272,532	+		MIT1002_02942	0.16	+0.7
3,272,537	+		MIT1002_02942	0.17	-1.0
3,272,537	+		MIT1002_02942	0.17	+0.2
3,272,537	+		MIT1002_02942	0.17	-1.5
3,272,539	+		MIT1002_02942	0.17	-0.9
3,272,545	-		MIT1002_02942	0.17	+0.2
3,272,545	-		MIT1002_02942	0.17	-0.3
3,272,547	-		MIT1002_02942	0.17	+1.0
3,272,576	+		MIT1002_02942	0.20	-0.2
3,272,576	+		MIT1002_02942	0.20	-1.4
3,272,576	+		MIT1002_02942	0.20	+0.4
3,272,584	-		MIT1002_02942	0.21	-0.9
3,272,586	+		MIT1002_02942	0.21	-0.4
3,272,594	-		MIT1002_02942	0.22	+0.9
3,272,594	-		MIT1002_02942	0.22	+0.1
3,272,594	-		MIT1002_02942	0.22	+0.1
3,272,597	+		MIT1002_02942	0.22	+0.1
3,272,597	+		MIT1002_02942	0.22	-1.6
3,272,605	-		MIT1002_02942	0.22	+0.3
3,272,605	-		MIT1002_02942	0.22	-0.1
3,272,605	-		MIT1002_02942	0.22	-1.4
3,272,605	-		MIT1002_02942	0.22	-1.3
3,272,752	+		MIT1002_02942	0.35	+0.5
3,272,760	-		MIT1002_02942	0.36	+1.5
3,272,901	+		MIT1002_02942	0.48	-1.3
3,272,901	+		MIT1002_02942	0.48	+0.7
3,272,901	+		MIT1002_02942	0.48	+0.4
3,272,901	+		MIT1002_02942	0.48	+0.5
3,272,908	+		MIT1002_02942	0.49	+0.1
3,272,909	-		MIT1002_02942	0.49	+0.6
3,272,916	+		MIT1002_02942	0.49	+0.5
3,272,916	+		MIT1002_02942	0.49	-2.2
3,272,980	+		MIT1002_02942	0.55	-3.0
3,272,980	+		MIT1002_02942	0.55	+0.0
3,272,980	+		MIT1002_02942	0.55	-0.1
3,272,987	+		MIT1002_02942	0.55	-0.3
3,272,994	-		MIT1002_02942	0.56	-0.5
3,272,994	-		MIT1002_02942	0.56	-0.8
3,272,994	-		MIT1002_02942	0.56	-0.2
3,272,994	-		MIT1002_02942	0.56	-0.4
3,273,036	-		MIT1002_02942	0.60	-1.3
3,273,131	-		MIT1002_02942	0.68	-0.3
3,273,182	+		MIT1002_02942	0.72	+0.2
3,273,219	-		MIT1002_02942	0.75	+0.6
3,273,219	-		MIT1002_02942	0.75	+0.8
3,273,219	-		MIT1002_02942	0.75	+1.7
3,273,224	+		MIT1002_02942	0.76	+1.2
3,273,359	+		MIT1002_02942	0.87	+0.1
3,273,361	+		MIT1002_02942	0.88	+0.7
3,273,400	+				-0.9
3,273,400	+				-1.5
3,273,477	-				-0.8
3,273,491	+				-2.5
3,273,507	-				+0.1
3,273,541	-				+0.7
3,273,541	-				-0.6
3,273,561	+				+0.3
3,273,561	+				-0.4
3,273,564	-				-0.3
3,273,569	-				-0.7
3,273,666	+				-1.3
3,273,691	+				+0.6
3,273,691	+				-1.5
3,273,751	+				-0.4
3,273,751	+				+0.0
3,273,751	+				-0.0
3,273,759	-				+1.4
3,273,759	-				-1.5
3,273,759	-				+0.4
3,273,818	+				-0.4
3,273,818	+				-1.1
3,273,828	+		MIT1002_02943	0.10	+0.6
3,273,844	-		MIT1002_02943	0.11	+0.1
3,273,941	-		MIT1002_02943	0.15	-0.3
3,273,941	-		MIT1002_02943	0.15	+0.3
3,273,941	-		MIT1002_02943	0.15	+1.4
3,274,078	+		MIT1002_02943	0.21	+1.1
3,274,078	+		MIT1002_02943	0.21	-0.2
3,274,158	+		MIT1002_02943	0.25	+0.9
3,274,164	-		MIT1002_02943	0.25	+0.3
3,274,267	+		MIT1002_02943	0.30	+0.6
3,274,277	+		MIT1002_02943	0.31	+0.1
3,274,336	-		MIT1002_02943	0.33	-0.3
3,274,392	+		MIT1002_02943	0.36	+0.4
3,274,394	+		MIT1002_02943	0.36	-0.9
3,274,413	-		MIT1002_02943	0.37	-0.3
3,274,458	-		MIT1002_02943	0.39	-0.7