Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02876

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
3,192,186	+		MIT1002_02875	0.49	+0.2
3,192,226	+		MIT1002_02875	0.51	-0.4
3,192,252	-		MIT1002_02875	0.53	-1.6
3,192,350	+		MIT1002_02875	0.58	+0.7
3,192,350	+		MIT1002_02875	0.58	-0.1
3,192,358	-		MIT1002_02875	0.59	-0.6
3,192,358	-		MIT1002_02875	0.59	+0.3
3,192,361	-		MIT1002_02875	0.59	+0.1
3,192,460	-		MIT1002_02875	0.65	-0.1
3,192,460	-		MIT1002_02875	0.65	+0.1
3,192,473	+		MIT1002_02875	0.66	-0.5
3,192,481	-		MIT1002_02875	0.66	-0.9
3,192,498	-		MIT1002_02875	0.67	-0.8
3,192,531	-		MIT1002_02875	0.69	+0.6
3,192,556	-		MIT1002_02875	0.71	-0.2
3,192,569	+		MIT1002_02875	0.71	+0.4
3,192,569	+		MIT1002_02875	0.71	+0.2
3,192,577	+		MIT1002_02875	0.72	+0.7
3,192,577	-		MIT1002_02875	0.72	+1.3
3,192,577	-		MIT1002_02875	0.72	+0.2
3,192,577	-		MIT1002_02875	0.72	-0.9
3,192,579	+		MIT1002_02875	0.72	+1.0
3,192,598	+		MIT1002_02875	0.73	+0.3
3,192,603	+		MIT1002_02875	0.73	-0.9
3,192,670	+		MIT1002_02875	0.77	+0.1
3,192,678	-		MIT1002_02875	0.78	-1.2
3,192,741	-		MIT1002_02875	0.82	-0.3
3,192,751	-		MIT1002_02875	0.82	-0.8
3,192,761	-		MIT1002_02875	0.83	-0.6
3,192,772	+		MIT1002_02875	0.84	-0.9
3,192,815	+		MIT1002_02875	0.86	-0.7
3,192,838	+		MIT1002_02875	0.87	-1.2
3,192,838	+		MIT1002_02875	0.87	+0.8
3,192,948	+				-0.1
3,192,979	-				+0.1
3,192,982	+				+1.6
3,192,996	+				+1.1
3,192,996	+				-2.3
3,193,004	-				+0.5
3,193,045	-				+1.7
3,193,089	+				-1.8
3,193,089	+				+0.8
3,193,097	-				-0.7
3,193,097	-				+0.1
3,193,223	+				+0.2
3,193,330	+		MIT1002_02876	0.14	-1.0
3,193,338	-		MIT1002_02876	0.14	+0.3
3,193,399	+		MIT1002_02876	0.20	-1.3
3,193,444	-		MIT1002_02876	0.24	+1.1
3,193,495	+		MIT1002_02876	0.29	-0.7
3,193,524	+		MIT1002_02876	0.32	+0.2
3,193,524	+		MIT1002_02876	0.32	-0.4
3,193,524	+		MIT1002_02876	0.32	+0.7
3,193,524	+		MIT1002_02876	0.32	-0.0
3,193,524	+		MIT1002_02876	0.32	-1.6
3,193,524	+		MIT1002_02876	0.32	+0.6
3,193,532	-		MIT1002_02876	0.32	-0.3
3,193,532	-		MIT1002_02876	0.32	-1.1
3,193,532	-		MIT1002_02876	0.32	-0.7
3,193,537	-		MIT1002_02876	0.33	-0.1
3,193,552	-		MIT1002_02876	0.34	-0.6
3,193,596	+		MIT1002_02876	0.38	-0.1
3,193,604	-		MIT1002_02876	0.39	+0.7
3,193,611	+		MIT1002_02876	0.40	+1.0
3,193,621	+		MIT1002_02876	0.41	+0.9
3,193,629	-		MIT1002_02876	0.42	+1.4
3,193,629	-		MIT1002_02876	0.42	-1.2
3,193,636	+		MIT1002_02876	0.42	+0.5
3,193,636	+		MIT1002_02876	0.42	+0.5
3,193,860	-		MIT1002_02876	0.63	+0.2
3,193,872	+		MIT1002_02876	0.64	-0.0
3,193,993	-		MIT1002_02876	0.76	-0.5
3,194,011	-		MIT1002_02876	0.77	-0.5
3,194,015	+		MIT1002_02876	0.78	-0.6
3,194,018	-		MIT1002_02876	0.78	-1.7
3,194,022	+		MIT1002_02876	0.78	-1.7
3,194,143	-		MIT1002_02876	0.90	+0.7
3,194,143	-		MIT1002_02876	0.90	-0.1
3,194,145	+				+0.4
3,194,147	+				+1.2
3,194,155	-				-1.4
3,194,217	+				+0.5
3,194,225	-				+2.4
3,194,394	+				-1.0
3,194,399	+				-1.6
3,194,402	-				-0.5
3,194,409	+				+0.2
3,194,423	+				-1.3
3,194,431	-				-0.2
3,194,483	+				+1.6
3,194,486	-				-0.2
3,194,491	-				-0.1
3,194,491	-				+0.1
3,194,594	+		MIT1002_02877	0.34	-0.2
3,194,600	-		MIT1002_02877	0.36	+1.6
3,194,602	-		MIT1002_02877	0.36	+0.7
3,194,610	+		MIT1002_02877	0.39	+1.2
3,194,618	-		MIT1002_02877	0.41	-0.2
3,194,623	-		MIT1002_02877	0.43	+1.5
3,194,623	-		MIT1002_02877	0.43	+1.1
3,194,635	-		MIT1002_02877	0.46	-0.9
3,194,709	+		MIT1002_02877	0.67	-0.9
3,194,775	+		MIT1002_02877	0.86	+1.0
3,194,787	+		MIT1002_02877	0.90	-0.1
3,194,795	-				+0.5
3,194,795	-				-0.5
3,194,817	+				-1.2
3,194,837	-				-0.2
3,194,874	+				+0.1
3,194,892	+				-0.1
3,195,035	+		MIT1002_02878	0.18	+0.6
3,195,035	+		MIT1002_02878	0.18	+0.3
3,195,059	+		MIT1002_02878	0.21	+1.4
3,195,067	-		MIT1002_02878	0.22	+0.9
3,195,067	-		MIT1002_02878	0.22	+2.7
3,195,128	-		MIT1002_02878	0.29	-0.8