Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02707

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
3,007,729	+		MIT1002_02706	0.42	+1.0
3,007,801	+		MIT1002_02706	0.48	-0.2
3,007,801	+		MIT1002_02706	0.48	+0.4
3,007,949	+		MIT1002_02706	0.59	-0.4
3,007,959	+		MIT1002_02706	0.59	+0.8
3,007,967	-		MIT1002_02706	0.60	+0.2
3,008,007	+		MIT1002_02706	0.63	+0.6
3,008,026	+		MIT1002_02706	0.64	-0.6
3,008,027	+		MIT1002_02706	0.64	-1.2
3,008,051	-		MIT1002_02706	0.66	-1.3
3,008,108	+		MIT1002_02706	0.70	+0.0
3,008,248	+		MIT1002_02706	0.80	-0.9
3,008,253	-		MIT1002_02706	0.81	+0.0
3,008,266	-		MIT1002_02706	0.82	+1.1
3,008,266	-		MIT1002_02706	0.82	-0.3
3,008,302	+		MIT1002_02706	0.84	-0.0
3,008,303	-		MIT1002_02706	0.84	+0.0
3,008,358	+		MIT1002_02706	0.88	+0.5
3,008,358	+		MIT1002_02706	0.88	+0.3
3,008,358	+		MIT1002_02706	0.88	-1.0
3,008,372	+		MIT1002_02706	0.89	-1.1
3,008,430	+				-0.6
3,008,444	+				+0.5
3,008,451	-				-1.2
3,008,460	+				+0.2
3,008,497	-				+0.3
3,008,507	-				+0.0
3,008,507	-				+0.1
3,008,575	+				-0.6
3,008,580	+				+1.0
3,008,587	+				+0.1
3,008,588	-				-0.9
3,008,588	-				+1.0
3,008,590	-				-1.7
3,008,626	-				-0.4
3,008,754	-				+1.5
3,008,754	-				-0.1
3,008,754	-				+0.9
3,008,765	-				+2.0
3,008,765	-				+0.0
3,008,771	+				-0.4
3,008,775	-				-0.2
3,008,780	-				+0.2
3,008,788	+				+0.4
3,008,788	+				+0.1
3,008,855	+				+0.1
3,008,855	+				+0.0
3,008,860	+				+0.6
3,008,874	+				-0.3
3,008,874	+				+0.4
3,008,874	+				-0.6
3,008,874	+				-0.1
3,008,874	+				+0.6
3,008,882	-				+0.6
3,008,882	-				+0.1
3,008,882	-				+0.1
3,008,935	-				-0.5
3,008,977	+		MIT1002_02707	0.11	+0.2
3,009,028	-		MIT1002_02707	0.13	+0.4
3,009,114	+		MIT1002_02707	0.16	+0.1
3,009,128	-		MIT1002_02707	0.17	-1.2
3,009,144	+		MIT1002_02707	0.17	+1.1
3,009,152	-		MIT1002_02707	0.18	+0.7
3,009,167	-		MIT1002_02707	0.18	+0.1
3,009,169	+		MIT1002_02707	0.18	-0.3
3,009,169	+		MIT1002_02707	0.18	-0.0
3,009,169	+		MIT1002_02707	0.18	-0.6
3,009,169	+		MIT1002_02707	0.18	+0.1
3,009,169	+		MIT1002_02707	0.18	+0.9
3,009,169	+		MIT1002_02707	0.18	+0.5
3,009,177	-		MIT1002_02707	0.19	-2.2
3,009,177	-		MIT1002_02707	0.19	+0.9
3,009,177	-		MIT1002_02707	0.19	-0.5
3,009,248	-		MIT1002_02707	0.21	-0.1
3,009,274	-		MIT1002_02707	0.23	-0.6
3,009,283	+		MIT1002_02707	0.23	-2.6
3,009,336	-		MIT1002_02707	0.25	+1.5
3,009,420	+		MIT1002_02707	0.28	-0.6
3,009,480	+		MIT1002_02707	0.31	-0.3
3,009,480	+		MIT1002_02707	0.31	-0.1
3,009,480	+		MIT1002_02707	0.31	+0.7
3,009,480	+		MIT1002_02707	0.31	-0.6
3,009,574	+		MIT1002_02707	0.34	-0.6
3,009,574	+		MIT1002_02707	0.34	+0.9
3,009,574	+		MIT1002_02707	0.34	+0.3
3,009,597	+		MIT1002_02707	0.35	+0.1
3,009,597	+		MIT1002_02707	0.35	-0.1
3,009,605	-		MIT1002_02707	0.36	+0.0
3,009,638	-		MIT1002_02707	0.37	-0.1
3,009,670	+		MIT1002_02707	0.38	+0.9
3,009,678	-		MIT1002_02707	0.39	+1.0
3,009,678	-		MIT1002_02707	0.39	+0.1
3,009,758	+		MIT1002_02707	0.42	+0.3
3,009,813	-		MIT1002_02707	0.44	+0.8
3,009,866	+		MIT1002_02707	0.46	+1.6
3,009,925	+		MIT1002_02707	0.48	+1.3
3,009,930	+		MIT1002_02707	0.48	+0.4
3,009,933	-		MIT1002_02707	0.49	+1.2
3,009,938	-		MIT1002_02707	0.49	-0.4
3,009,989	+		MIT1002_02707	0.51	-0.1
3,009,999	-		MIT1002_02707	0.51	-0.5
3,010,070	-		MIT1002_02707	0.54	+0.4
3,010,079	+		MIT1002_02707	0.54	+1.7
3,010,087	-		MIT1002_02707	0.55	-1.2
3,010,233	-		MIT1002_02707	0.60	-1.9
3,010,305	+		MIT1002_02707	0.63	+0.7
3,010,305	+		MIT1002_02707	0.63	-0.5
3,010,305	+		MIT1002_02707	0.63	+2.1
3,010,313	-		MIT1002_02707	0.64	+0.8
3,010,451	-		MIT1002_02707	0.69	+0.7
3,010,525	-		MIT1002_02707	0.72	-1.4
3,010,551	-		MIT1002_02707	0.73	+0.4
3,010,639	-		MIT1002_02707	0.77	+0.0
3,010,670	-		MIT1002_02707	0.78	-1.1
3,010,670	-		MIT1002_02707	0.78	-0.6
3,010,677	-		MIT1002_02707	0.78	-0.1
3,010,705	-		MIT1002_02707	0.79	+0.7
3,010,782	-		MIT1002_02707	0.82	+0.9
3,010,882	+		MIT1002_02707	0.86	+0.8
3,010,957	-		MIT1002_02707	0.89	+0.8
3,011,069	+				-0.2
3,011,094	+				-0.2
3,011,094	+				-0.5
3,011,151	+				-0.6
3,011,151	+				-1.2
3,011,159	-				+0.5
3,011,212	-				-0.1
3,011,276	-				-0.0
3,011,331	-				-1.5
3,011,343	+				+0.5
3,011,474	-				-6.5
3,011,508	+		MIT1002_02708	0.10	-4.4
3,011,609	-		MIT1002_02708	0.20	-5.2
3,011,709	+		MIT1002_02708	0.30	-3.9
3,011,740	+		MIT1002_02708	0.33	-2.0
3,011,740	+		MIT1002_02708	0.33	-4.7
3,011,748	-		MIT1002_02708	0.34	-3.8
3,011,872	+		MIT1002_02708	0.46	-5.6
3,011,922	+		MIT1002_02708	0.51	-1.6
3,011,952	-		MIT1002_02708	0.54	-2.6
3,011,997	+		MIT1002_02708	0.59	-3.2
3,012,005	-		MIT1002_02708	0.59	-2.9
3,012,010	-		MIT1002_02708	0.60	-2.6
3,012,061	-		MIT1002_02708	0.65	-2.5
3,012,072	+		MIT1002_02708	0.66	-4.6
3,012,092	+		MIT1002_02708	0.68	-4.8
3,012,102	+		MIT1002_02708	0.69	-2.9
3,012,102	+		MIT1002_02708	0.69	-5.1
3,012,110	-		MIT1002_02708	0.70	-4.5
3,012,110	-		MIT1002_02708	0.70	-3.9
3,012,125	-		MIT1002_02708	0.71	-1.0
3,012,200	-		MIT1002_02708	0.79	-2.6
3,012,209	-		MIT1002_02708	0.80	-5.5
3,012,209	-		MIT1002_02708	0.80	-4.1