Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02632

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
2,924,554	+				-1.6
2,924,554	+				+1.1
2,924,554	+				-0.2
2,924,554	+				-1.1
2,924,556	+				+0.0
2,924,562	-		MIT1002_02629	0.11	-1.0
2,924,562	-		MIT1002_02629	0.11	+0.2
2,924,562	-		MIT1002_02629	0.11	+0.8
2,924,562	-		MIT1002_02629	0.11	-0.6
2,924,597	-		MIT1002_02629	0.24	+0.2
2,924,632	+		MIT1002_02629	0.37	-2.8
2,924,640	-		MIT1002_02629	0.40	+0.1
2,924,657	+		MIT1002_02629	0.47	+1.2
2,924,686	+		MIT1002_02629	0.58	+0.4
2,924,696	+		MIT1002_02629	0.61	+0.9
2,924,704	-		MIT1002_02629	0.64	+0.7
2,924,721	+		MIT1002_02629	0.71	+0.4
2,924,801	-				-1.8
2,924,967	+		MIT1002_02630	0.64	-0.1
2,925,044	-				+0.1
2,925,059	+				-1.0
2,925,059	+				+0.6
2,925,067	-				+0.1
2,925,067	-				-2.5
2,925,079	+				-0.3
2,925,147	+				-0.2
2,925,157	+				-2.8
2,925,190	+				+0.2
2,925,227	-				-4.4
2,925,330	+				+0.5
2,925,333	+				-0.7
2,925,396	-				-2.6
2,925,469	-				-3.6
2,925,522	+				-4.0
2,925,522	-				-9.6
2,925,522	-				-5.0
2,925,524	+				-5.9
2,925,551	-		MIT1002_02632	0.11	-3.7
2,925,622	+		MIT1002_02632	0.19	-2.8
2,925,644	-		MIT1002_02632	0.21	-5.1
2,925,654	+		MIT1002_02632	0.22	-1.2
2,925,654	-		MIT1002_02632	0.22	-5.8
2,925,662	-		MIT1002_02632	0.23	-5.3
2,925,735	+		MIT1002_02632	0.31	-2.3
2,925,735	+		MIT1002_02632	0.31	-3.1
2,925,735	+		MIT1002_02632	0.31	-1.0
2,925,735	+		MIT1002_02632	0.31	-2.7
2,925,735	-		MIT1002_02632	0.31	-3.2
2,925,738	-		MIT1002_02632	0.32	-6.0
2,925,745	+		MIT1002_02632	0.32	-2.1
2,925,745	+		MIT1002_02632	0.32	-1.2
2,925,765	+		MIT1002_02632	0.35	-3.2
2,925,839	+		MIT1002_02632	0.43	-1.0
2,925,888	-		MIT1002_02632	0.48	-2.2
2,925,901	-		MIT1002_02632	0.50	-5.5
2,925,902	-		MIT1002_02632	0.50	-2.9
2,925,913	-		MIT1002_02632	0.51	-2.6
2,925,918	-		MIT1002_02632	0.51	-3.0
2,925,918	-		MIT1002_02632	0.51	-2.2
2,925,937	+		MIT1002_02632	0.54	-2.7
2,925,944	-		MIT1002_02632	0.54	-3.5
2,925,945	-		MIT1002_02632	0.54	-4.3
2,925,973	+		MIT1002_02632	0.58	-4.1
2,926,056	-		MIT1002_02632	0.67	-1.0
2,926,098	-		MIT1002_02632	0.71	-3.2
2,926,102	-		MIT1002_02632	0.72	-2.1
2,926,131	+		MIT1002_02632	0.75	-2.8
2,926,155	+		MIT1002_02632	0.78	-4.0
2,926,165	+		MIT1002_02632	0.79	-4.4
2,926,187	+		MIT1002_02632	0.81	-1.2
2,926,191	-		MIT1002_02632	0.82	-2.7
2,926,296	+				-3.2
2,926,445	+				-3.1
2,926,499	+				-4.5
2,926,537	+		MIT1002_02633	0.13	-3.0
2,926,537	+		MIT1002_02633	0.13	-4.6
2,926,547	+		MIT1002_02633	0.14	-3.0
2,926,632	-		MIT1002_02633	0.20	-3.9
2,926,683	-		MIT1002_02633	0.24	-3.6
2,926,710	+		MIT1002_02633	0.26	-7.1
2,926,723	-		MIT1002_02633	0.27	-9.9
2,926,796	-		MIT1002_02633	0.33	-6.8
2,926,827	+		MIT1002_02633	0.35	-3.5
2,926,827	+		MIT1002_02633	0.35	-4.5
2,926,827	+		MIT1002_02633	0.35	-7.9
2,926,835	-		MIT1002_02633	0.36	-2.6
2,926,835	-		MIT1002_02633	0.36	-2.5
2,926,835	-		MIT1002_02633	0.36	-3.8
2,926,835	-		MIT1002_02633	0.36	-2.8
2,926,919	+		MIT1002_02633	0.42	-2.3
2,926,922	-		MIT1002_02633	0.42	-1.6
2,926,993	+		MIT1002_02633	0.48	-3.6
2,926,993	+		MIT1002_02633	0.48	-1.0
2,926,993	+		MIT1002_02633	0.48	-4.3
2,926,993	+		MIT1002_02633	0.48	-4.9
2,927,109	+		MIT1002_02633	0.57	-3.7
2,927,143	+		MIT1002_02633	0.59	-9.2
2,927,186	+		MIT1002_02633	0.63	-3.7
2,927,186	+		MIT1002_02633	0.63	-1.0
2,927,186	+		MIT1002_02633	0.63	-2.9
2,927,218	+		MIT1002_02633	0.65	-2.9
2,927,224	-		MIT1002_02633	0.66	-1.5
2,927,236	+		MIT1002_02633	0.66	-4.0
2,927,292	+		MIT1002_02633	0.71	-3.0
2,927,305	+		MIT1002_02633	0.72	-1.6
2,927,320	-		MIT1002_02633	0.73	-5.1
2,927,328	+		MIT1002_02633	0.73	-5.0
2,927,328	+		MIT1002_02633	0.73	-2.8
2,927,336	-		MIT1002_02633	0.74	-4.0
2,927,336	-		MIT1002_02633	0.74	-5.1
2,927,338	+		MIT1002_02633	0.74	-3.9
2,927,346	-		MIT1002_02633	0.75	-4.3
2,927,351	-		MIT1002_02633	0.75	-3.0