Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02557

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
2,849,627	+		MIT1002_02556	0.32	+1.8
2,849,637	+		MIT1002_02556	0.33	-1.0
2,849,641	+		MIT1002_02556	0.33	-2.0
2,849,649	-		MIT1002_02556	0.34	-0.4
2,849,651	+		MIT1002_02556	0.34	+1.9
2,849,651	+		MIT1002_02556	0.34	-2.3
2,849,659	-		MIT1002_02556	0.34	-0.0
2,849,659	-		MIT1002_02556	0.34	+0.0
2,849,659	-		MIT1002_02556	0.34	+0.4
2,849,659	-		MIT1002_02556	0.34	-0.3
2,849,665	+		MIT1002_02556	0.35	-0.7
2,849,666	-		MIT1002_02556	0.35	+0.3
2,849,673	-		MIT1002_02556	0.35	+0.2
2,849,683	-		MIT1002_02556	0.36	+0.0
2,849,730	-		MIT1002_02556	0.40	-1.3
2,849,740	+		MIT1002_02556	0.41	+0.2
2,849,777	+		MIT1002_02556	0.43	+0.9
2,849,777	+		MIT1002_02556	0.43	-0.1
2,849,785	-		MIT1002_02556	0.44	-0.5
2,849,785	-		MIT1002_02556	0.44	-0.0
2,849,856	+		MIT1002_02556	0.49	-0.7
2,849,856	+		MIT1002_02556	0.49	-0.1
2,849,864	-		MIT1002_02556	0.50	+0.5
2,850,038	+		MIT1002_02556	0.63	-0.4
2,850,039	+		MIT1002_02556	0.63	+0.4
2,850,054	-		MIT1002_02556	0.65	-0.7
2,850,056	+		MIT1002_02556	0.65	+0.3
2,850,181	+		MIT1002_02556	0.74	-1.1
2,850,201	+		MIT1002_02556	0.76	+0.3
2,850,213	-		MIT1002_02556	0.77	-1.0
2,850,260	+		MIT1002_02556	0.80	-0.1
2,850,288	+		MIT1002_02556	0.82	-0.1
2,850,373	+		MIT1002_02556	0.89	-0.3
2,850,635	+				-2.3
2,850,646	-				+0.8
2,850,703	+				+0.0
2,850,703	+				+0.4
2,850,706	-				-1.6
2,850,726	+				-2.9
2,850,726	+				+1.1
2,850,754	+				-0.5
2,850,828	+				-2.2
2,850,879	+				+1.0
2,850,898	-				+0.6
2,850,904	-				-1.3
2,850,904	-				-1.5
2,850,928	+				-0.1
2,851,069	+		MIT1002_02557	0.12	-0.4
2,851,113	+		MIT1002_02557	0.13	+0.6
2,851,151	-		MIT1002_02557	0.14	-0.1
2,851,151	-		MIT1002_02557	0.14	-0.1
2,851,164	+		MIT1002_02557	0.14	-1.3
2,851,180	-		MIT1002_02557	0.14	-1.1
2,851,195	-		MIT1002_02557	0.15	-1.0
2,851,198	-		MIT1002_02557	0.15	-0.3
2,851,222	-		MIT1002_02557	0.15	-0.1
2,851,249	-		MIT1002_02557	0.16	-0.4
2,851,254	-		MIT1002_02557	0.16	-1.0
2,851,298	+		MIT1002_02557	0.17	-0.0
2,851,329	+		MIT1002_02557	0.18	-0.3
2,851,364	+		MIT1002_02557	0.19	-0.4
2,851,403	+		MIT1002_02557	0.20	+2.1
2,851,403	+		MIT1002_02557	0.20	-1.8
2,851,403	+		MIT1002_02557	0.20	-0.6
2,851,403	+		MIT1002_02557	0.20	+0.9
2,851,513	+		MIT1002_02557	0.23	+0.7
2,851,513	+		MIT1002_02557	0.23	-0.8
2,851,513	+		MIT1002_02557	0.23	+2.7
2,851,521	-		MIT1002_02557	0.23	+0.5
2,851,521	-		MIT1002_02557	0.23	+1.9
2,851,521	-		MIT1002_02557	0.23	+0.2
2,851,521	-		MIT1002_02557	0.23	-0.6
2,851,521	-		MIT1002_02557	0.23	+0.3
2,851,531	-		MIT1002_02557	0.23	-2.3
2,851,531	-		MIT1002_02557	0.23	-0.5
2,851,588	-		MIT1002_02557	0.24	-0.5
2,851,596	-		MIT1002_02557	0.25	-2.1
2,851,616	+		MIT1002_02557	0.25	+0.9
2,851,634	+		MIT1002_02557	0.25	+0.1
2,851,640	+		MIT1002_02557	0.26	+1.6
2,851,642	-		MIT1002_02557	0.26	-0.8
2,851,672	+		MIT1002_02557	0.26	+0.2
2,851,680	-		MIT1002_02557	0.27	-0.4
2,851,680	-		MIT1002_02557	0.27	-0.9
2,851,682	+		MIT1002_02557	0.27	-0.8
2,851,682	+		MIT1002_02557	0.27	-0.1
2,851,752	+		MIT1002_02557	0.28	+0.3
2,851,760	-		MIT1002_02557	0.29	-1.3
2,851,814	-		MIT1002_02557	0.30	+0.4
2,851,925	+		MIT1002_02557	0.33	+0.0
2,851,933	-		MIT1002_02557	0.33	+1.1
2,852,172	-		MIT1002_02557	0.39	-1.3
2,852,220	-		MIT1002_02557	0.40	+0.1
2,852,249	-		MIT1002_02557	0.40	-0.5
2,852,282	+		MIT1002_02557	0.41	+0.5
2,852,392	-		MIT1002_02557	0.44	-0.1
2,852,407	+		MIT1002_02557	0.44	-0.1
2,852,415	+		MIT1002_02557	0.44	-0.8
2,852,471	+		MIT1002_02557	0.46	-0.7
2,852,474	+		MIT1002_02557	0.46	+0.6
2,852,476	+		MIT1002_02557	0.46	-1.1
2,852,481	+		MIT1002_02557	0.46	-1.1
2,852,527	-		MIT1002_02557	0.47	-0.3
2,852,640	+		MIT1002_02557	0.50	-1.4
2,852,648	-		MIT1002_02557	0.50	-1.7
2,852,648	-		MIT1002_02557	0.50	-1.6
2,852,648	-		MIT1002_02557	0.50	+0.5
2,852,667	+		MIT1002_02557	0.51	-0.5
2,852,701	+		MIT1002_02557	0.51	-0.4
2,852,701	+		MIT1002_02557	0.51	-0.3
2,852,714	-		MIT1002_02557	0.52	-1.0
2,852,808	-		MIT1002_02557	0.54	-0.7
2,852,816	-		MIT1002_02557	0.54	-2.0
2,852,818	-		MIT1002_02557	0.54	-0.5
2,852,854	+		MIT1002_02557	0.55	-0.3
2,852,968	+		MIT1002_02557	0.58	-0.7
2,852,976	-		MIT1002_02557	0.58	+0.9
2,853,002	+		MIT1002_02557	0.59	+0.3
2,853,006	+		MIT1002_02557	0.59	+0.3
2,853,035	+		MIT1002_02557	0.59	-0.1
2,853,035	+		MIT1002_02557	0.59	+1.5
2,853,043	-		MIT1002_02557	0.60	-0.5
2,853,043	-		MIT1002_02557	0.60	-0.3
2,853,043	-		MIT1002_02557	0.60	+0.8
2,853,176	+		MIT1002_02557	0.63	-3.1
2,853,198	+		MIT1002_02557	0.63	-1.3
2,853,368	-		MIT1002_02557	0.68	-2.7
2,853,403	+		MIT1002_02557	0.68	-1.1
2,853,411	-		MIT1002_02557	0.69	-0.0
2,853,411	-		MIT1002_02557	0.69	+0.3
2,853,488	-		MIT1002_02557	0.70	-1.0
2,853,509	-		MIT1002_02557	0.71	-0.4
2,853,539	+		MIT1002_02557	0.72	-1.0
2,853,549	-		MIT1002_02557	0.72	-0.7
2,853,722	-		MIT1002_02557	0.76	-1.2
2,853,730	-		MIT1002_02557	0.76	-0.8
2,853,733	+		MIT1002_02557	0.76	+2.6
2,853,736	-		MIT1002_02557	0.76	-0.2
2,853,741	-		MIT1002_02557	0.77	-0.6
2,853,741	-		MIT1002_02557	0.77	-0.3
2,853,741	-		MIT1002_02557	0.77	-0.4
2,853,785	-		MIT1002_02557	0.78	+0.0
2,853,785	-		MIT1002_02557	0.78	-0.8
2,853,811	+		MIT1002_02557	0.78	-0.7
2,853,876	+		MIT1002_02557	0.80	-1.0
2,853,891	-		MIT1002_02557	0.80	-0.6
2,853,891	-		MIT1002_02557	0.80	+0.9
2,853,891	-		MIT1002_02557	0.80	-1.9
2,853,894	+		MIT1002_02557	0.80	-0.7
2,853,907	-		MIT1002_02557	0.81	-0.1
2,853,960	+		MIT1002_02557	0.82	-0.8
2,853,960	+		MIT1002_02557	0.82	-0.5
2,853,960	+		MIT1002_02557	0.82	-0.4
2,853,960	+		MIT1002_02557	0.82	-0.6
2,853,960	+		MIT1002_02557	0.82	-0.2
2,853,960	+		MIT1002_02557	0.82	-1.3
2,853,960	+		MIT1002_02557	0.82	-0.0
2,853,962	-		MIT1002_02557	0.82	+0.0
2,853,968	-		MIT1002_02557	0.82	-0.7
2,853,968	-		MIT1002_02557	0.82	-0.8
2,853,996	+		MIT1002_02557	0.83	-0.7
2,854,050	+		MIT1002_02557	0.84	+1.0
2,854,050	+		MIT1002_02557	0.84	-0.7
2,854,187	+		MIT1002_02557	0.87	+0.3
2,854,194	-		MIT1002_02557	0.88	-1.4
2,854,302	+				+2.0
2,854,395	+				-1.1
2,854,427	+				+0.1
2,854,445	-				-1.6
2,854,465	+				-0.2
2,854,573	-				+1.2
2,854,593	+				-0.5
2,854,603	+				-0.3
2,854,698	+				-1.3
2,854,713	+				-0.5
2,854,740	-				-0.1
2,854,752	+				+0.2
2,854,885	-				+0.4
2,854,989	-				+1.8
2,855,004	+				-0.4
2,855,012	-				+0.5
2,855,089	-				-0.3
2,855,089	-				-1.9
2,855,137	-				-3.1
2,855,167	-				-1.3
2,855,188	+				-1.6
2,855,201	-				-0.2
2,855,304	+		MIT1002_02558	0.12	+0.5
2,855,352	+		MIT1002_02558	0.14	-0.8
2,855,416	-		MIT1002_02558	0.16	-1.0
2,855,416	-		MIT1002_02558	0.16	+1.4
2,855,417	-		MIT1002_02558	0.16	-1.0
2,855,418	+		MIT1002_02558	0.16	+0.9
2,855,426	-		MIT1002_02558	0.16	+0.4
2,855,437	-		MIT1002_02558	0.17	-0.9
2,855,437	-		MIT1002_02558	0.17	-0.0
2,855,459	-		MIT1002_02558	0.18	+0.2
2,855,563	+		MIT1002_02558	0.21	+0.1
2,855,563	+		MIT1002_02558	0.21	-1.1
2,855,597	+		MIT1002_02558	0.23	+2.7
2,855,599	-		MIT1002_02558	0.23	-0.2
2,855,605	-		MIT1002_02558	0.23	+0.2
2,855,653	-		MIT1002_02558	0.25	-0.3
2,855,685	+		MIT1002_02558	0.26	-1.5
2,855,694	-		MIT1002_02558	0.26	-0.9