Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02435

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
2,718,813	+		MIT1002_02434	0.49	+0.5
2,718,849	-		MIT1002_02434	0.52	+0.0
2,718,854	-		MIT1002_02434	0.53	-3.1
2,718,892	+		MIT1002_02434	0.57	-0.2
2,718,922	-		MIT1002_02434	0.60	-0.1
2,718,929	+		MIT1002_02434	0.60	+0.6
2,718,934	+		MIT1002_02434	0.61	+1.5
2,718,937	-		MIT1002_02434	0.61	-1.1
2,718,942	-		MIT1002_02434	0.62	-1.5
2,718,958	-		MIT1002_02434	0.63	-0.1
2,718,997	+		MIT1002_02434	0.67	-3.4
2,719,005	-		MIT1002_02434	0.68	-3.0
2,719,079	+		MIT1002_02434	0.76	-1.3
2,719,087	-		MIT1002_02434	0.77	-1.1
2,719,112	-		MIT1002_02434	0.79	+0.4
2,719,122	+		MIT1002_02434	0.80	-0.0
2,719,168	-		MIT1002_02434	0.85	+0.3
2,719,173	+		MIT1002_02434	0.86	+2.3
2,719,174	+		MIT1002_02434	0.86	-0.4
2,719,205	-		MIT1002_02434	0.89	-1.1
2,719,342	+				+2.3
2,719,389	-				+0.0
2,719,701	+				-0.4
2,719,726	+				-0.1
2,719,726	+				-1.0
2,719,726	+				-0.2
2,719,734	-				-0.3
2,719,734	-				+0.3
2,719,747	-				-0.7
2,719,773	-				+1.6
2,719,884	+		MIT1002_02435	0.21	-1.1
2,719,890	-		MIT1002_02435	0.23	+0.2
2,719,923	+		MIT1002_02435	0.29	+0.5
2,719,931	-		MIT1002_02435	0.31	-0.7
2,719,931	-		MIT1002_02435	0.31	-0.0
2,719,992	-		MIT1002_02435	0.43	+0.4
2,720,043	+		MIT1002_02435	0.53	-1.7
2,720,048	+		MIT1002_02435	0.54	+0.5
2,720,051	-		MIT1002_02435	0.55	-0.4
2,720,051	-		MIT1002_02435	0.55	-0.2
2,720,058	+		MIT1002_02435	0.56	+0.7
2,720,058	+		MIT1002_02435	0.56	+0.0
2,720,058	+		MIT1002_02435	0.56	+0.1
2,720,066	-		MIT1002_02435	0.58	+1.0
2,720,066	-		MIT1002_02435	0.58	+0.1
2,720,188	+		MIT1002_02435	0.82	+0.5
2,720,194	+		MIT1002_02435	0.83	-0.5
2,720,195	-		MIT1002_02435	0.83	-0.1
2,720,199	+		MIT1002_02435	0.84	+0.8
2,720,222	-		MIT1002_02435	0.89	-1.3
2,720,302	+				+1.6
2,720,327	+				+0.7
2,720,343	-				-0.0
2,720,368	+				-0.7
2,720,429	+		MIT1002_02436	0.12	+0.6
2,720,451	-		MIT1002_02436	0.14	+0.5
2,720,462	+		MIT1002_02436	0.15	-2.4
2,720,498	+		MIT1002_02436	0.19	-0.6
2,720,505	+		MIT1002_02436	0.19	+0.9
2,720,506	-		MIT1002_02436	0.20	+0.0
2,720,506	-		MIT1002_02436	0.20	-0.7
2,720,519	+		MIT1002_02436	0.21	-1.3
2,720,593	+		MIT1002_02436	0.28	-2.8
2,720,615	-		MIT1002_02436	0.30	+1.0
2,720,632	+		MIT1002_02436	0.32	+1.0
2,720,660	+		MIT1002_02436	0.34	-0.4
2,720,670	-		MIT1002_02436	0.35	-0.4
2,720,673	+		MIT1002_02436	0.36	-0.1
2,720,703	-		MIT1002_02436	0.39	+1.4
2,720,735	-		MIT1002_02436	0.42	+2.1
2,720,864	+		MIT1002_02436	0.54	-0.1
2,720,865	-		MIT1002_02436	0.54	-0.7
2,720,886	+		MIT1002_02436	0.56	-1.5
2,720,904	+		MIT1002_02436	0.58	-0.9
2,720,912	-		MIT1002_02436	0.59	+0.4
2,720,912	-		MIT1002_02436	0.59	-0.9
2,720,912	-		MIT1002_02436	0.59	+0.6
2,720,932	-		MIT1002_02436	0.61	+0.7
2,720,945	+		MIT1002_02436	0.62	-0.1
2,720,988	-		MIT1002_02436	0.66	+1.4
2,720,999	-		MIT1002_02436	0.67	+0.1
2,721,018	+		MIT1002_02436	0.69	-2.0
2,721,018	+		MIT1002_02436	0.69	+0.7
2,721,038	-		MIT1002_02436	0.71	+0.5
2,721,094	-		MIT1002_02436	0.77	+0.1
2,721,094	-		MIT1002_02436	0.77	+3.3
2,721,118	+		MIT1002_02436	0.79	+0.8
2,721,154	+		MIT1002_02436	0.82	+0.3
2,721,179	+		MIT1002_02436	0.85	+0.6
2,721,180	+		MIT1002_02436	0.85	+1.0
2,721,187	-		MIT1002_02436	0.86	-0.9
2,721,187	-		MIT1002_02436	0.86	-0.2
2,721,200	+		MIT1002_02436	0.87	-1.0
2,721,200	+		MIT1002_02436	0.87	-0.1
2,721,208	-		MIT1002_02436	0.88	-0.2
2,721,210	-		MIT1002_02436	0.88	+2.0
2,721,210	-		MIT1002_02436	0.88	+0.7
2,721,228	-		MIT1002_02436	0.90	+0.6
2,721,230	+		MIT1002_02436	0.90	-1.0
2,721,275	+				+2.0