Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02012

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
2,251,938	-		MIT1002_02011	0.87	-0.7
2,251,981	+		MIT1002_02011	0.89	-0.3
2,252,042	+				-2.1
2,252,042	+				+3.6
2,252,042	-				-1.2
2,252,050	-				+1.0
2,252,050	-				+0.1
2,252,087	-				-1.1
2,252,104	+				+0.6
2,252,131	-				-1.4
2,252,131	-				+0.2
2,252,220	-				-0.8
2,252,258	-				-1.1
2,252,264	-				+0.2
2,252,329	-				+0.0
2,252,329	-				+0.6
2,252,329	-				-2.5
2,252,331	+				-0.2
2,252,339	-				-0.2
2,252,339	-				-0.4
2,252,339	-				-0.5
2,252,374	+				-0.3
2,252,375	+				+1.1
2,252,379	+				-0.8
2,252,382	-				-0.8
2,252,398	-				-0.5
2,252,442	-				+0.1
2,252,540	-				-0.3
2,252,623	-				-0.6
2,252,654	+				+1.5
2,252,694	+				-0.1
2,252,728	+				-0.9
2,252,903	+				-0.5
2,253,018	+				-5.5
2,253,018	-				-2.5
2,253,072	-		MIT1002_02012	0.12	-3.0
2,253,116	+		MIT1002_02012	0.15	-2.6
2,253,141	-		MIT1002_02012	0.17	-1.6
2,253,141	-		MIT1002_02012	0.17	-2.6
2,253,141	-		MIT1002_02012	0.17	-2.9
2,253,179	+		MIT1002_02012	0.21	-4.2
2,253,182	+		MIT1002_02012	0.21	-4.5
2,253,187	-		MIT1002_02012	0.21	-3.0
2,253,187	-		MIT1002_02012	0.21	-5.9
2,253,190	+		MIT1002_02012	0.22	-3.5
2,253,197	-		MIT1002_02012	0.22	-4.7
2,253,244	-		MIT1002_02012	0.26	-4.3
2,253,300	-		MIT1002_02012	0.31	-6.0
2,253,300	-		MIT1002_02012	0.31	-7.6
2,253,348	+		MIT1002_02012	0.35	-2.7
2,253,370	+		MIT1002_02012	0.37	-2.5
2,253,488	-		MIT1002_02012	0.47	-3.7
2,253,514	-		MIT1002_02012	0.49	-4.8
2,253,528	+		MIT1002_02012	0.50	-4.3
2,253,528	+		MIT1002_02012	0.50	-4.3
2,253,528	+		MIT1002_02012	0.50	-3.5
2,253,528	+		MIT1002_02012	0.50	-4.7
2,253,528	+		MIT1002_02012	0.50	-3.4
2,253,528	+		MIT1002_02012	0.50	-4.9
2,253,528	+		MIT1002_02012	0.50	-5.2
2,253,528	+		MIT1002_02012	0.50	-4.3
2,253,536	-		MIT1002_02012	0.51	-3.1
2,253,536	-		MIT1002_02012	0.51	-2.8
2,253,536	-		MIT1002_02012	0.51	-4.3
2,253,536	-		MIT1002_02012	0.51	-2.8
2,253,536	-		MIT1002_02012	0.51	-6.2
2,253,546	+		MIT1002_02012	0.52	-4.2
2,253,546	+		MIT1002_02012	0.52	-5.2
2,253,554	-		MIT1002_02012	0.52	-3.4
2,253,554	-		MIT1002_02012	0.52	-1.6
2,253,698	+		MIT1002_02012	0.64	-6.1
2,253,698	-		MIT1002_02012	0.64	-4.7
2,253,756	-		MIT1002_02012	0.69	-1.6
2,253,837	+		MIT1002_02012	0.76	-4.2
2,253,845	-		MIT1002_02012	0.77	-1.1
2,253,940	+		MIT1002_02012	0.85	-4.4
2,253,957	+		MIT1002_02012	0.86	-3.3
2,254,022	-				-3.1
2,254,094	+				+1.5
2,254,094	+				+0.0
2,254,094	+				-0.8
2,254,129	+				+0.5
2,254,160	-				-3.3
2,254,170	-				-1.8
2,254,170	-				-3.3
2,254,219	+		MIT1002_02013	0.10	-4.5
2,254,227	-		MIT1002_02013	0.11	-4.1
2,254,231	+		MIT1002_02013	0.11	-3.9
2,254,341	+		MIT1002_02013	0.22	-3.6
2,254,341	+		MIT1002_02013	0.22	-4.0
2,254,349	-		MIT1002_02013	0.23	-2.7
2,254,352	-		MIT1002_02013	0.24	-5.4
2,254,415	+		MIT1002_02013	0.30	-4.0
2,254,475	+		MIT1002_02013	0.36	-4.0
2,254,531	-		MIT1002_02013	0.42	-2.9
2,254,547	+		MIT1002_02013	0.44	-2.9
2,254,547	+		MIT1002_02013	0.44	-3.1
2,254,547	+		MIT1002_02013	0.44	-4.6
2,254,550	-		MIT1002_02013	0.44	-3.5
2,254,555	-		MIT1002_02013	0.44	-2.5
2,254,565	-		MIT1002_02013	0.45	-3.8
2,254,566	+		MIT1002_02013	0.46	-2.1
2,254,590	-		MIT1002_02013	0.48	-1.3
2,254,590	-		MIT1002_02013	0.48	-4.6
2,254,597	-		MIT1002_02013	0.49	-1.9
2,254,647	-		MIT1002_02013	0.54	-4.3
2,254,673	-		MIT1002_02013	0.56	-0.8
2,254,796	+		MIT1002_02013	0.69	-4.4
2,254,836	+		MIT1002_02013	0.73	-1.6
2,254,846	-		MIT1002_02013	0.74	-3.8
2,254,862	+		MIT1002_02013	0.76	-5.3
2,254,921	-		MIT1002_02013	0.82	-4.0
2,254,997	+		MIT1002_02013	0.90	-6.3
2,255,012	-				-2.1
2,255,072	+				-2.3
2,255,095	-				-6.4
2,255,100	-				-4.3