Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01830

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
2,038,048	+		MIT1002_01829	0.13	+0.0
2,038,048	+		MIT1002_01829	0.13	-2.3
2,038,054	+		MIT1002_01829	0.14	+0.4
2,038,054	+		MIT1002_01829	0.14	-3.0
2,038,056	-		MIT1002_01829	0.14	+0.7
2,038,062	-		MIT1002_01829	0.15	-1.5
2,038,077	+		MIT1002_01829	0.18	-0.8
2,038,077	+		MIT1002_01829	0.18	+0.5
2,038,082	+		MIT1002_01829	0.19	+1.1
2,038,085	-		MIT1002_01829	0.19	+0.0
2,038,137	+		MIT1002_01829	0.29	+0.4
2,038,147	+		MIT1002_01829	0.31	-0.9
2,038,250	-		MIT1002_01829	0.50	-1.0
2,038,366	+		MIT1002_01829	0.71	-0.1
2,038,419	-		MIT1002_01829	0.81	-1.1
2,038,420	+		MIT1002_01829	0.81	+0.3
2,038,420	+		MIT1002_01829	0.81	+1.0
2,038,420	+		MIT1002_01829	0.81	+0.6
2,038,428	-		MIT1002_01829	0.83	+0.9
2,038,440	-		MIT1002_01829	0.85	+1.3
2,038,440	-		MIT1002_01829	0.85	+0.2
2,038,451	-		MIT1002_01829	0.87	-0.3
2,038,503	+				+1.6
2,038,785	-				-3.0
2,038,815	-				-1.9
2,038,822	+				+0.1
2,038,896	-				-1.9
2,038,901	-				-2.5
2,038,948	-				-1.4
2,039,002	+				-0.1
2,039,009	+				-0.0
2,039,012	-				-2.4
2,039,012	-				-2.4
2,039,012	-				-4.0
2,039,205	-				-0.7
2,039,420	+		MIT1002_01830	0.17	-3.7
2,039,420	+		MIT1002_01830	0.17	-2.6
2,039,420	+		MIT1002_01830	0.17	-3.0
2,039,420	+		MIT1002_01830	0.17	-4.2
2,039,420	+		MIT1002_01830	0.17	-2.8
2,039,428	-		MIT1002_01830	0.18	-5.1
2,039,428	-		MIT1002_01830	0.18	-2.5
2,039,428	-		MIT1002_01830	0.18	-0.7
2,039,428	-		MIT1002_01830	0.18	-2.8
2,039,428	-		MIT1002_01830	0.18	-3.3
2,039,428	-		MIT1002_01830	0.18	-3.1
2,039,428	-		MIT1002_01830	0.18	-2.9
2,039,428	-		MIT1002_01830	0.18	-1.7
2,039,428	-		MIT1002_01830	0.18	-2.4
2,039,428	-		MIT1002_01830	0.18	-3.8
2,039,469	+		MIT1002_01830	0.20	-1.9
2,039,494	-		MIT1002_01830	0.21	-3.0
2,039,661	+		MIT1002_01830	0.28	-3.0
2,039,669	-		MIT1002_01830	0.29	-0.9
2,039,731	+		MIT1002_01830	0.31	-0.1
2,039,793	+		MIT1002_01830	0.34	-3.0
2,039,793	+		MIT1002_01830	0.34	-4.8
2,039,816	-		MIT1002_01830	0.35	-2.4
2,040,072	+		MIT1002_01830	0.47	-2.8
2,040,114	-		MIT1002_01830	0.49	-1.0
2,040,252	-		MIT1002_01830	0.55	-3.0
2,040,257	-		MIT1002_01830	0.55	-3.0
2,040,262	-		MIT1002_01830	0.55	-1.0
2,040,457	+		MIT1002_01830	0.64	-2.7
2,040,498	-		MIT1002_01830	0.66	-2.3
2,040,616	-		MIT1002_01830	0.71	-3.4
2,040,616	-		MIT1002_01830	0.71	-2.0
2,040,786	+		MIT1002_01830	0.79	-1.6
2,040,898	+		MIT1002_01830	0.84	-2.6
2,040,979	+		MIT1002_01830	0.88	-2.5
2,041,025	+		MIT1002_01830	0.90	-2.7
2,041,025	+		MIT1002_01830	0.90	-3.8
2,041,025	+		MIT1002_01830	0.90	-3.5
2,041,025	+		MIT1002_01830	0.90	-3.2
2,041,033	-		MIT1002_01830	0.90	-3.4
2,041,033	-		MIT1002_01830	0.90	-2.7
2,041,033	-		MIT1002_01830	0.90	-4.0
2,041,033	-		MIT1002_01830	0.90	-2.0
2,041,084	+				-2.4
2,041,148	+				-3.8
2,041,190	+				-4.6
2,041,284	+				-0.1
2,041,360	-				+0.1
2,041,384	+				+0.8
2,041,392	-				-0.7
2,041,392	-				-2.1
2,041,395	+				+0.8
2,041,428	-				+1.5
2,041,434	-				-1.5
2,041,453	-				-2.1
2,041,472	+				+0.4
2,041,499	-				-0.1
2,041,580	+				-1.3
2,041,774	+		MIT1002_01832	0.18	-2.0
2,041,795	-		MIT1002_01832	0.27	-2.7
2,041,835	+		MIT1002_01832	0.46	-1.9
2,041,930	-		MIT1002_01832	0.89	-3.0
2,041,955	-				-1.3
2,041,988	+				-2.5
2,041,990	-				-0.6
2,041,998	+				-1.4
2,042,006	-				-1.2
2,042,202	-				-1.9