Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00936

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
1,035,455	-		MIT1002_00934	0.62	+0.3
1,035,472	-		MIT1002_00934	0.64	+1.3
1,035,474	+		MIT1002_00934	0.64	-0.1
1,035,474	+		MIT1002_00934	0.64	-2.1
1,035,529	-		MIT1002_00934	0.70	+0.1
1,035,532	+		MIT1002_00934	0.70	-0.7
1,035,547	+		MIT1002_00934	0.72	-0.5
1,035,582	+		MIT1002_00934	0.75	-1.2
1,035,588	-		MIT1002_00934	0.76	+0.2
1,035,590	-		MIT1002_00934	0.76	+0.4
1,035,598	-		MIT1002_00934	0.77	-0.6
1,035,634	-		MIT1002_00934	0.80	-0.2
1,035,639	-		MIT1002_00934	0.81	-0.3
1,035,641	-		MIT1002_00934	0.81	-0.3
1,035,644	+		MIT1002_00934	0.81	+0.3
1,035,653	-		MIT1002_00934	0.82	+0.3
1,035,738	+				+0.1
1,035,743	+				-0.7
1,035,766	+				+0.6
1,035,845	-				-1.1
1,035,887	+		MIT1002_00935	0.11	-1.4
1,035,907	+		MIT1002_00935	0.15	-1.0
1,035,944	+		MIT1002_00935	0.22	+0.5
1,036,044	+		MIT1002_00935	0.42	+1.4
1,036,077	+		MIT1002_00935	0.48	-0.5
1,036,085	+		MIT1002_00935	0.50	+1.4
1,036,163	+		MIT1002_00935	0.65	+0.5
1,036,194	+		MIT1002_00935	0.71	+1.8
1,036,246	-		MIT1002_00935	0.81	+0.4
1,036,250	+		MIT1002_00935	0.82	+0.0
1,036,250	+		MIT1002_00935	0.82	+1.1
1,036,282	-		MIT1002_00935	0.88	-0.0
1,036,342	+				-0.5
1,036,347	+				+1.0
1,036,357	-				-0.1
1,036,371	-				-3.2
1,036,383	+				-0.5
1,036,383	+				-0.1
1,036,416	+				-0.9
1,036,416	+				-0.6
1,036,416	+				+0.6
1,036,424	-				-1.8
1,036,424	-				-0.6
1,036,424	-				-0.1
1,036,424	-				-2.9
1,036,508	+				-1.5
1,036,516	-				-0.6
1,036,516	-				+1.6
1,036,545	+				-0.1
1,036,552	+				-2.1
1,036,583	-				+0.9
1,036,583	-				-0.2
1,036,583	-				+1.8
1,036,583	-				-0.8
1,036,633	+		MIT1002_00936	0.10	-1.8
1,036,645	+		MIT1002_00936	0.11	+0.7
1,036,653	-		MIT1002_00936	0.11	+0.7
1,036,653	-		MIT1002_00936	0.11	+0.5
1,036,653	-		MIT1002_00936	0.11	-0.2
1,036,672	-		MIT1002_00936	0.12	+0.9
1,036,679	-		MIT1002_00936	0.13	-0.3
1,036,701	-		MIT1002_00936	0.14	+0.2
1,036,727	+		MIT1002_00936	0.15	+0.2
1,036,735	+		MIT1002_00936	0.16	-0.7
1,036,787	-		MIT1002_00936	0.19	-1.2
1,036,800	-		MIT1002_00936	0.20	-1.7
1,036,804	-		MIT1002_00936	0.20	+0.1
1,036,865	-		MIT1002_00936	0.23	-1.4
1,036,903	-		MIT1002_00936	0.25	-0.0
1,036,977	+		MIT1002_00936	0.29	-0.3
1,036,982	+		MIT1002_00936	0.30	-0.8
1,037,037	-		MIT1002_00936	0.33	+2.9
1,037,061	+		MIT1002_00936	0.34	-0.1
1,037,073	+		MIT1002_00936	0.35	-0.2
1,037,073	+		MIT1002_00936	0.35	-0.1
1,037,163	-		MIT1002_00936	0.40	+0.3
1,037,183	+		MIT1002_00936	0.41	+0.7
1,037,183	+		MIT1002_00936	0.41	+0.6
1,037,191	-		MIT1002_00936	0.41	-0.1
1,037,191	-		MIT1002_00936	0.41	-1.0
1,037,191	-		MIT1002_00936	0.41	+2.3
1,037,201	-		MIT1002_00936	0.42	+0.2
1,037,201	-		MIT1002_00936	0.42	+1.0
1,037,209	+		MIT1002_00936	0.42	+0.7
1,037,209	-		MIT1002_00936	0.42	-0.0
1,037,450	+		MIT1002_00936	0.56	+0.9
1,037,450	+		MIT1002_00936	0.56	-2.2
1,037,451	-		MIT1002_00936	0.56	+0.2
1,037,456	-		MIT1002_00936	0.56	+1.6
1,037,476	+		MIT1002_00936	0.58	+0.9
1,037,486	+		MIT1002_00936	0.58	-0.5
1,037,488	+		MIT1002_00936	0.58	-0.1
1,037,494	-		MIT1002_00936	0.59	-3.4
1,037,494	-		MIT1002_00936	0.59	+0.3
1,037,737	+		MIT1002_00936	0.72	+0.5
1,037,745	+		MIT1002_00936	0.73	+1.8
1,037,752	+		MIT1002_00936	0.73	-0.9
1,037,760	-		MIT1002_00936	0.73	-0.2
1,037,823	+		MIT1002_00936	0.77	+1.1
1,037,838	-		MIT1002_00936	0.78	-0.0
1,037,868	+		MIT1002_00936	0.80	+0.7
1,037,886	-		MIT1002_00936	0.81	-2.6
1,037,977	-		MIT1002_00936	0.86	-0.1
1,037,985	+		MIT1002_00936	0.86	+0.1
1,038,081	+				+0.3
1,038,223	+				+1.2
1,038,282	+				-1.3
1,038,282	+				+0.3
1,038,290	-				+1.2
1,038,290	-				-0.6
1,038,304	-		MIT1002_00937	0.12	+0.3
1,038,348	+		MIT1002_00937	0.20	+0.1
1,038,479	-		MIT1002_00937	0.43	-0.6
1,038,479	-		MIT1002_00937	0.43	+1.3
1,038,481	+		MIT1002_00937	0.43	-0.6
1,038,481	+		MIT1002_00937	0.43	+1.0
1,038,481	+		MIT1002_00937	0.43	+1.1
1,038,489	-		MIT1002_00937	0.45	-0.1
1,038,501	-		MIT1002_00937	0.47	+1.7
1,038,534	-		MIT1002_00937	0.52	+0.3
1,038,552	+		MIT1002_00937	0.55	+0.3
1,038,566	-		MIT1002_00937	0.58	+1.3
1,038,583	+		MIT1002_00937	0.61	-0.6
1,038,583	+		MIT1002_00937	0.61	-1.3
1,038,583	+		MIT1002_00937	0.61	+0.5
1,038,591	-		MIT1002_00937	0.62	+0.3
1,038,599	-		MIT1002_00937	0.64	+0.2
1,038,601	+		MIT1002_00937	0.64	+0.5
1,038,609	+		MIT1002_00937	0.65	-0.3
1,038,609	-		MIT1002_00937	0.65	-0.3
1,038,619	+		MIT1002_00937	0.67	-0.5
1,038,679	+		MIT1002_00937	0.78	+0.2
1,038,687	-		MIT1002_00937	0.79	-0.6
1,038,687	-		MIT1002_00937	0.79	-0.0
1,038,718	-		MIT1002_00937	0.84	-1.0
1,038,796	-				-2.1
1,038,818	+				+2.3
1,038,826	-				-0.7
1,038,826	-				+1.1
1,038,859	+				+0.4
1,038,897	-				+1.0
1,038,945	+				-1.0
1,038,959	+				-0.6
1,038,967	-				-0.5
1,039,019	-				-1.3
1,039,037	-				-0.2
1,039,059	+				-0.1
1,039,171	+				-2.2
1,039,174	-				-2.0
1,039,176	+				+0.7
1,039,190	+				-0.4