Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00816 and MIT1002_00817 are separated by 168 nucleotides MIT1002_00817 and MIT1002_00818 overlap by 4 nucleotides MIT1002_00818 and MIT1002_00819 are separated by 185 nucleotides
MIT1002_00816: MIT1002_00816 - Cytochrome c1 precursor, at 901,361 to 902,095
_00816
MIT1002_00817: MIT1002_00817 - Stringent starvation protein A, at 902,264 to 902,896
_00817
MIT1002_00818: MIT1002_00818 - Stringent starvation protein B, at 902,893 to 903,366
_00818
MIT1002_00819: MIT1002_00819 - Spondin_N, at 903,552 to 904,400
_00819
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 902.044 kb on - strand at 902.968 kb on - strand, within MIT1002_00818 at 903.146 kb on + strand, within MIT1002_00818 at 903.193 kb on + strand, within MIT1002_00818 at 903.262 kb on + strand, within MIT1002_00818 at 903.320 kb on - strand at 903.325 kb on - strand at 903.336 kb on + strand at 903.344 kb on - strand at 903.427 kb on - strand at 903.480 kb on - strand at 903.509 kb on - strand at 903.520 kb on - strand at 903.520 kb on - strand at 903.535 kb on + strand at 903.543 kb on - strand at 903.612 kb on - strand at 903.617 kb on - strand at 903.627 kb on - strand at 903.629 kb on + strand at 903.671 kb on - strand, within MIT1002_00819 at 903.776 kb on + strand, within MIT1002_00819 at 903.792 kb on - strand, within MIT1002_00819 at 903.805 kb on - strand, within MIT1002_00819 at 903.892 kb on + strand, within MIT1002_00819 at 903.927 kb on + strand, within MIT1002_00819 at 903.932 kb on + strand, within MIT1002_00819 at 903.963 kb on + strand, within MIT1002_00819 at 903.964 kb on - strand, within MIT1002_00819 at 904.016 kb on - strand, within MIT1002_00819 at 904.035 kb on + strand, within MIT1002_00819 at 904.043 kb on - strand, within MIT1002_00819 at 904.054 kb on + strand, within MIT1002_00819 at 904.138 kb on - strand, within MIT1002_00819 at 904.148 kb on - strand, within MIT1002_00819 at 904.167 kb on - strand, within MIT1002_00819 at 904.168 kb on - strand, within MIT1002_00819 at 904.175 kb on - strand, within MIT1002_00819 at 904.186 kb on - strand, within MIT1002_00819 at 904.209 kb on - strand, within MIT1002_00819 at 904.247 kb on + strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.279 kb on + strand, within MIT1002_00819 at 904.290 kb on + strand, within MIT1002_00819 at 904.298 kb on - strand, within MIT1002_00819 at 904.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 902,044 - -3.5 902,968 - MIT1002_00818 0.16 -2.1 903,146 + MIT1002_00818 0.53 +0.6 903,193 + MIT1002_00818 0.63 -1.2 903,262 + MIT1002_00818 0.78 -1.1 903,320 - -0.2 903,325 - -1.2 903,336 + -1.5 903,344 - +0.3 903,427 - +0.4 903,480 - -0.7 903,509 - -0.3 903,520 - -0.7 903,520 - +0.1 903,535 + -2.2 903,543 - +1.7 903,612 - -2.6 903,617 - -0.2 903,627 - +0.6 903,629 + +1.1 903,671 - MIT1002_00819 0.14 +0.5 903,776 + MIT1002_00819 0.26 -1.3 903,792 - MIT1002_00819 0.28 +0.2 903,805 - MIT1002_00819 0.30 -0.4 903,892 + MIT1002_00819 0.40 +0.3 903,927 + MIT1002_00819 0.44 -0.3 903,932 + MIT1002_00819 0.45 -0.4 903,963 + MIT1002_00819 0.48 +0.0 903,964 - MIT1002_00819 0.49 +0.0 904,016 - MIT1002_00819 0.55 -2.0 904,035 + MIT1002_00819 0.57 +1.2 904,043 - MIT1002_00819 0.58 -0.5 904,054 + MIT1002_00819 0.59 -1.3 904,138 - MIT1002_00819 0.69 +0.6 904,148 - MIT1002_00819 0.70 -1.0 904,167 - MIT1002_00819 0.72 +0.7 904,168 - MIT1002_00819 0.73 +0.2 904,175 - MIT1002_00819 0.73 +0.7 904,186 - MIT1002_00819 0.75 +1.3 904,209 - MIT1002_00819 0.77 -1.2 904,247 + MIT1002_00819 0.82 +1.0 904,256 - MIT1002_00819 0.83 -0.3 904,256 - MIT1002_00819 0.83 +1.4 904,256 - MIT1002_00819 0.83 -2.2 904,279 + MIT1002_00819 0.86 +0.3 904,290 + MIT1002_00819 0.87 -1.3 904,298 - MIT1002_00819 0.88 -1.6 904,343 + -1.1
Or see this region's nucleotide sequence