Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00809

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00807 and MIT1002_00808 overlap by 11 nucleotidesMIT1002_00808 and MIT1002_00809 overlap by 17 nucleotidesMIT1002_00809 and MIT1002_00810 are separated by 1 nucleotidesMIT1002_00810 and MIT1002_00811 are separated by 75 nucleotides MIT1002_00807: MIT1002_00807 - hypothetical protein, at 893,888 to 894,652 _00807 MIT1002_00808: MIT1002_00808 - hypothetical protein, at 894,642 to 895,007 _00808 MIT1002_00809: MIT1002_00809 - Sensor protein QseC, at 894,991 to 896,280 _00809 MIT1002_00810: MIT1002_00810 - Transcriptional regulatory protein BasR, at 896,282 to 896,947 _00810 MIT1002_00811: MIT1002_00811 - hypothetical protein, at 897,023 to 897,895 _00811 Position (kb) 894 895 896 897Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 894.071 kb on + strand, within MIT1002_00807at 894.093 kb on - strand, within MIT1002_00807at 894.137 kb on + strand, within MIT1002_00807at 894.234 kb on + strand, within MIT1002_00807at 894.239 kb on + strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.327 kb on + strand, within MIT1002_00807at 894.340 kb on - strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.372 kb on - strand, within MIT1002_00807at 894.377 kb on - strand, within MIT1002_00807at 894.413 kb on + strand, within MIT1002_00807at 894.447 kb on + strand, within MIT1002_00807at 894.472 kb on + strand, within MIT1002_00807at 894.498 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.606 kb on - strandat 894.711 kb on - strand, within MIT1002_00808at 894.748 kb on + strand, within MIT1002_00808at 894.818 kb on - strand, within MIT1002_00808at 894.934 kb on - strand, within MIT1002_00808at 894.966 kb on - strand, within MIT1002_00808at 895.058 kb on - strandat 895.062 kb on + strandat 895.070 kb on - strandat 895.075 kb on - strandat 895.094 kb on + strandat 895.099 kb on + strandat 895.104 kb on + strandat 895.176 kb on + strand, within MIT1002_00809at 895.176 kb on + strand, within MIT1002_00809at 895.179 kb on - strand, within MIT1002_00809at 895.184 kb on - strand, within MIT1002_00809at 895.184 kb on - strand, within MIT1002_00809at 895.297 kb on + strand, within MIT1002_00809at 895.297 kb on + strand, within MIT1002_00809at 895.305 kb on - strand, within MIT1002_00809at 895.309 kb on + strand, within MIT1002_00809at 895.312 kb on + strand, within MIT1002_00809at 895.323 kb on + strand, within MIT1002_00809at 895.403 kb on + strand, within MIT1002_00809at 895.461 kb on + strand, within MIT1002_00809at 895.469 kb on - strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.526 kb on + strand, within MIT1002_00809at 895.534 kb on - strand, within MIT1002_00809at 895.610 kb on + strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.618 kb on - strand, within MIT1002_00809at 895.664 kb on + strand, within MIT1002_00809at 895.672 kb on - strand, within MIT1002_00809at 895.672 kb on - strand, within MIT1002_00809at 895.685 kb on + strand, within MIT1002_00809at 895.693 kb on - strand, within MIT1002_00809at 895.695 kb on - strand, within MIT1002_00809at 895.697 kb on + strand, within MIT1002_00809at 895.704 kb on - strand, within MIT1002_00809at 895.729 kb on + strand, within MIT1002_00809at 895.811 kb on - strand, within MIT1002_00809at 895.917 kb on - strand, within MIT1002_00809at 895.926 kb on + strand, within MIT1002_00809at 895.926 kb on + strand, within MIT1002_00809at 895.983 kb on - strand, within MIT1002_00809at 895.984 kb on - strand, within MIT1002_00809at 895.984 kb on - strand, within MIT1002_00809at 896.020 kb on + strand, within MIT1002_00809at 896.020 kb on - strand, within MIT1002_00809at 896.028 kb on - strand, within MIT1002_00809at 896.028 kb on - strand, within MIT1002_00809at 896.028 kb on - strand, within MIT1002_00809at 896.028 kb on - strand, within MIT1002_00809at 896.051 kb on - strand, within MIT1002_00809at 896.143 kb on - strand, within MIT1002_00809at 896.143 kb on - strand, within MIT1002_00809at 896.143 kb on - strand, within MIT1002_00809at 896.171 kb on + strandat 896.190 kb on - strandat 896.202 kb on - strandat 896.208 kb on - strandat 896.245 kb on - strandat 896.323 kb on - strandat 896.374 kb on + strand, within MIT1002_00810at 896.374 kb on + strand, within MIT1002_00810at 896.441 kb on - strand, within MIT1002_00810at 896.531 kb on + strand, within MIT1002_00810at 896.596 kb on - strand, within MIT1002_00810at 896.596 kb on - strand, within MIT1002_00810at 896.608 kb on + strand, within MIT1002_00810at 896.616 kb on - strand, within MIT1002_00810at 896.644 kb on + strand, within MIT1002_00810at 896.664 kb on - strand, within MIT1002_00810at 896.697 kb on + strand, within MIT1002_00810at 896.720 kb on - strand, within MIT1002_00810at 896.786 kb on - strand, within MIT1002_00810at 896.868 kb on + strand, within MIT1002_00810at 896.896 kb on + strandat 896.904 kb on - strandat 896.912 kb on - strandat 896.936 kb on + strandat 896.936 kb on + strandat 897.013 kb on + strandat 897.013 kb on - strandat 897.020 kb on + strandat 897.070 kb on + strandat 897.076 kb on - strandat 897.105 kb on + strandat 897.175 kb on + strand, within MIT1002_00811at 897.183 kb on - strand, within MIT1002_00811at 897.220 kb on - strand, within MIT1002_00811at 897.229 kb on + strand, within MIT1002_00811at 897.261 kb on - strand, within MIT1002_00811

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
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894,071 + MIT1002_00807 0.24 -0.1
894,093 - MIT1002_00807 0.27 +0.2
894,137 + MIT1002_00807 0.33 +0.7
894,234 + MIT1002_00807 0.45 +1.0
894,239 + MIT1002_00807 0.46 +0.2
894,242 - MIT1002_00807 0.46 -0.1
894,242 - MIT1002_00807 0.46 +1.0
894,327 + MIT1002_00807 0.57 -0.3
894,340 - MIT1002_00807 0.59 +1.2
894,358 + MIT1002_00807 0.61 -0.6
894,358 + MIT1002_00807 0.61 +0.9
894,358 + MIT1002_00807 0.61 -1.1
894,364 + MIT1002_00807 0.62 +0.9
894,364 + MIT1002_00807 0.62 +0.8
894,364 + MIT1002_00807 0.62 -0.4
894,364 + MIT1002_00807 0.62 -1.4
894,364 + MIT1002_00807 0.62 -0.6
894,366 - MIT1002_00807 0.62 +0.3
894,366 - MIT1002_00807 0.62 -0.1
894,372 - MIT1002_00807 0.63 +0.2
894,377 - MIT1002_00807 0.64 -0.8
894,413 + MIT1002_00807 0.69 +0.4
894,447 + MIT1002_00807 0.73 +0.4
894,472 + MIT1002_00807 0.76 +0.6
894,498 + MIT1002_00807 0.80 +1.7
894,509 + MIT1002_00807 0.81 +0.3
894,509 + MIT1002_00807 0.81 +1.8
894,606 - +1.1
894,711 - MIT1002_00808 0.19 +0.7
894,748 + MIT1002_00808 0.29 +0.8
894,818 - MIT1002_00808 0.48 +0.3
894,934 - MIT1002_00808 0.80 -1.3
894,966 - MIT1002_00808 0.89 +0.2
895,058 - -4.0
895,062 + -3.1
895,070 - -1.8
895,075 - -2.3
895,094 + -5.1
895,099 + -4.3
895,104 + -3.9
895,176 + MIT1002_00809 0.14 -3.6
895,176 + MIT1002_00809 0.14 -2.3
895,179 - MIT1002_00809 0.15 -3.7
895,184 - MIT1002_00809 0.15 -5.8
895,184 - MIT1002_00809 0.15 -1.1
895,297 + MIT1002_00809 0.24 -3.5
895,297 + MIT1002_00809 0.24 -3.6
895,305 - MIT1002_00809 0.24 -3.4
895,309 + MIT1002_00809 0.25 -1.3
895,312 + MIT1002_00809 0.25 -3.6
895,323 + MIT1002_00809 0.26 -2.2
895,403 + MIT1002_00809 0.32 -3.1
895,461 + MIT1002_00809 0.36 -4.9
895,469 - MIT1002_00809 0.37 -4.8
895,526 + MIT1002_00809 0.41 -6.1
895,526 + MIT1002_00809 0.41 -4.4
895,526 + MIT1002_00809 0.41 -2.3
895,526 + MIT1002_00809 0.41 -5.7
895,534 - MIT1002_00809 0.42 -4.8
895,610 + MIT1002_00809 0.48 -1.4
895,618 - MIT1002_00809 0.49 -1.6
895,618 - MIT1002_00809 0.49 -3.6
895,618 - MIT1002_00809 0.49 -4.1
895,618 - MIT1002_00809 0.49 -3.6
895,618 - MIT1002_00809 0.49 -3.1
895,664 + MIT1002_00809 0.52 -4.5
895,672 - MIT1002_00809 0.53 -3.2
895,672 - MIT1002_00809 0.53 -2.6
895,685 + MIT1002_00809 0.54 -5.0
895,693 - MIT1002_00809 0.54 -2.6
895,695 - MIT1002_00809 0.55 -2.4
895,697 + MIT1002_00809 0.55 -0.5
895,704 - MIT1002_00809 0.55 -2.5
895,729 + MIT1002_00809 0.57 -4.5
895,811 - MIT1002_00809 0.64 -4.9
895,917 - MIT1002_00809 0.72 -0.1
895,926 + MIT1002_00809 0.72 -0.8
895,926 + MIT1002_00809 0.72 -0.3
895,983 - MIT1002_00809 0.77 -1.6
895,984 - MIT1002_00809 0.77 -3.1
895,984 - MIT1002_00809 0.77 -2.5
896,020 + MIT1002_00809 0.80 -6.0
896,020 - MIT1002_00809 0.80 -7.3
896,028 - MIT1002_00809 0.80 -2.2
896,028 - MIT1002_00809 0.80 -2.6
896,028 - MIT1002_00809 0.80 -3.8
896,028 - MIT1002_00809 0.80 -3.3
896,051 - MIT1002_00809 0.82 -3.4
896,143 - MIT1002_00809 0.89 -3.5
896,143 - MIT1002_00809 0.89 -1.6
896,143 - MIT1002_00809 0.89 -3.1
896,171 + -4.5
896,190 - -3.0
896,202 - -2.6
896,208 - -2.7
896,245 - -5.8
896,323 - +0.9
896,374 + MIT1002_00810 0.14 -0.2
896,374 + MIT1002_00810 0.14 +1.0
896,441 - MIT1002_00810 0.24 -0.7
896,531 + MIT1002_00810 0.37 +0.8
896,596 - MIT1002_00810 0.47 +0.2
896,596 - MIT1002_00810 0.47 +1.2
896,608 + MIT1002_00810 0.49 -0.3
896,616 - MIT1002_00810 0.50 +0.9
896,644 + MIT1002_00810 0.54 -0.5
896,664 - MIT1002_00810 0.57 +0.5
896,697 + MIT1002_00810 0.62 -0.5
896,720 - MIT1002_00810 0.66 -0.0
896,786 - MIT1002_00810 0.76 +0.9
896,868 + MIT1002_00810 0.88 -0.5
896,896 + -0.4
896,904 - +0.4
896,912 - +1.9
896,936 + +0.5
896,936 + +0.8
897,013 + +0.2
897,013 - -0.5
897,020 + -0.4
897,070 + +0.4
897,076 - +1.4
897,105 + +0.3
897,175 + MIT1002_00811 0.17 +0.9
897,183 - MIT1002_00811 0.18 +0.5
897,220 - MIT1002_00811 0.23 +0.1
897,229 + MIT1002_00811 0.24 -0.5
897,261 - MIT1002_00811 0.27 -0.4

Or see this region's nucleotide sequence