Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00714 and MIT1002_00715 are separated by 221 nucleotides MIT1002_00715 and MIT1002_00716 overlap by 21 nucleotides MIT1002_00716 and MIT1002_00718 are separated by 459 nucleotides
MIT1002_00714: MIT1002_00714 - Thiol:disulfide interchange protein DsbA precursor, at 782,017 to 782,649
_00714
MIT1002_00715: MIT1002_00715 - hypothetical protein, at 782,871 to 782,978
_00715
MIT1002_00716: MIT1002_00716 - Outer membrane cobalamin translocator, at 782,958 to 784,910
_00716
MIT1002_00718: MIT1002_00718 - serine/threonine protein kinase, at 785,370 to 786,353
_00718
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.123 kb on + strand, within MIT1002_00714 at 782.723 kb on - strand at 782.842 kb on - strand at 782.931 kb on + strand, within MIT1002_00715 at 782.974 kb on + strand at 782.994 kb on + strand at 782.994 kb on + strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.116 kb on - strand at 783.148 kb on - strand at 783.148 kb on - strand at 783.154 kb on + strand, within MIT1002_00716 at 783.159 kb on - strand, within MIT1002_00716 at 783.181 kb on + strand, within MIT1002_00716 at 783.247 kb on + strand, within MIT1002_00716 at 783.269 kb on + strand, within MIT1002_00716 at 783.269 kb on + strand, within MIT1002_00716 at 783.269 kb on + strand, within MIT1002_00716 at 783.269 kb on + strand, within MIT1002_00716 at 783.269 kb on + strand, within MIT1002_00716 at 783.277 kb on - strand, within MIT1002_00716 at 783.277 kb on - strand, within MIT1002_00716 at 783.277 kb on - strand, within MIT1002_00716 at 783.277 kb on - strand, within MIT1002_00716 at 783.279 kb on + strand, within MIT1002_00716 at 783.280 kb on - strand, within MIT1002_00716 at 783.282 kb on - strand, within MIT1002_00716 at 783.315 kb on + strand, within MIT1002_00716 at 783.315 kb on + strand, within MIT1002_00716 at 783.323 kb on - strand, within MIT1002_00716 at 783.323 kb on - strand, within MIT1002_00716 at 783.366 kb on + strand, within MIT1002_00716 at 783.377 kb on + strand, within MIT1002_00716 at 783.396 kb on + strand, within MIT1002_00716 at 783.409 kb on - strand, within MIT1002_00716 at 783.466 kb on + strand, within MIT1002_00716 at 783.466 kb on + strand, within MIT1002_00716 at 783.480 kb on + strand, within MIT1002_00716 at 783.488 kb on - strand, within MIT1002_00716 at 783.508 kb on + strand, within MIT1002_00716 at 783.596 kb on + strand, within MIT1002_00716 at 783.633 kb on + strand, within MIT1002_00716 at 783.731 kb on + strand, within MIT1002_00716 at 783.731 kb on + strand, within MIT1002_00716 at 783.731 kb on + strand, within MIT1002_00716 at 783.739 kb on - strand, within MIT1002_00716 at 783.781 kb on + strand, within MIT1002_00716 at 783.781 kb on + strand, within MIT1002_00716 at 783.829 kb on + strand, within MIT1002_00716 at 783.832 kb on - strand, within MIT1002_00716 at 783.839 kb on + strand, within MIT1002_00716 at 783.847 kb on - strand, within MIT1002_00716 at 783.897 kb on + strand, within MIT1002_00716 at 783.912 kb on + strand, within MIT1002_00716 at 783.920 kb on - strand, within MIT1002_00716 at 783.926 kb on + strand, within MIT1002_00716 at 783.937 kb on - strand, within MIT1002_00716 at 783.948 kb on + strand, within MIT1002_00716 at 783.948 kb on + strand, within MIT1002_00716 at 783.960 kb on - strand, within MIT1002_00716 at 783.972 kb on - strand, within MIT1002_00716 at 783.972 kb on - strand, within MIT1002_00716 at 783.972 kb on - strand, within MIT1002_00716 at 784.058 kb on + strand, within MIT1002_00716 at 784.058 kb on + strand, within MIT1002_00716 at 784.080 kb on + strand, within MIT1002_00716 at 784.123 kb on + strand, within MIT1002_00716 at 784.289 kb on - strand, within MIT1002_00716 at 784.330 kb on - strand, within MIT1002_00716 at 784.340 kb on - strand, within MIT1002_00716 at 784.371 kb on + strand, within MIT1002_00716 at 784.371 kb on - strand, within MIT1002_00716 at 784.385 kb on - strand, within MIT1002_00716 at 784.395 kb on + strand, within MIT1002_00716 at 784.424 kb on + strand, within MIT1002_00716 at 784.427 kb on - strand, within MIT1002_00716 at 784.439 kb on - strand, within MIT1002_00716 at 784.478 kb on + strand, within MIT1002_00716 at 784.493 kb on + strand, within MIT1002_00716 at 784.503 kb on + strand, within MIT1002_00716 at 784.511 kb on - strand, within MIT1002_00716 at 784.530 kb on + strand, within MIT1002_00716 at 784.543 kb on - strand, within MIT1002_00716 at 784.592 kb on - strand, within MIT1002_00716 at 784.619 kb on + strand, within MIT1002_00716 at 784.619 kb on + strand, within MIT1002_00716 at 784.791 kb on - strand at 784.814 kb on + strand at 784.822 kb on + strand at 784.838 kb on + strand at 784.848 kb on + strand at 784.849 kb on - strand at 784.856 kb on - strand at 784.856 kb on - strand at 784.856 kb on - strand at 784.984 kb on + strand at 784.985 kb on - strand at 784.992 kb on - strand at 785.153 kb on - strand at 785.211 kb on - strand at 785.277 kb on - strand at 785.283 kb on - strand at 785.394 kb on + strand at 785.394 kb on + strand at 785.402 kb on - strand at 785.409 kb on + strand at 785.451 kb on + strand at 785.471 kb on - strand, within MIT1002_00718 at 785.500 kb on - strand, within MIT1002_00718 at 785.526 kb on - strand, within MIT1002_00718 at 785.538 kb on - strand, within MIT1002_00718 at 785.548 kb on + strand, within MIT1002_00718 at 785.564 kb on + strand, within MIT1002_00718 at 785.709 kb on + strand, within MIT1002_00718 at 785.724 kb on + strand, within MIT1002_00718 at 785.739 kb on - strand, within MIT1002_00718 at 785.778 kb on + strand, within MIT1002_00718 at 785.817 kb on - strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.845 kb on + strand, within MIT1002_00718 at 785.859 kb on + strand, within MIT1002_00718
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 782,123 + MIT1002_00714 0.17 -1.1 782,723 - -0.4 782,842 - +0.1 782,931 + MIT1002_00715 0.56 +1.5 782,974 + -0.7 782,994 + -0.8 782,994 + -1.0 783,002 - +0.5 783,002 - -0.8 783,002 - +0.1 783,116 - -0.8 783,148 - -0.6 783,148 - +0.7 783,154 + MIT1002_00716 0.10 -2.8 783,159 - MIT1002_00716 0.10 -1.6 783,181 + MIT1002_00716 0.11 +0.1 783,247 + MIT1002_00716 0.15 +0.6 783,269 + MIT1002_00716 0.16 +1.1 783,269 + MIT1002_00716 0.16 -3.0 783,269 + MIT1002_00716 0.16 -0.5 783,269 + MIT1002_00716 0.16 -0.9 783,269 + MIT1002_00716 0.16 -0.6 783,277 - MIT1002_00716 0.16 +0.5 783,277 - MIT1002_00716 0.16 -0.7 783,277 - MIT1002_00716 0.16 -2.2 783,277 - MIT1002_00716 0.16 -1.6 783,279 + MIT1002_00716 0.16 +0.0 783,280 - MIT1002_00716 0.16 -2.4 783,282 - MIT1002_00716 0.17 -0.9 783,315 + MIT1002_00716 0.18 -0.4 783,315 + MIT1002_00716 0.18 +0.5 783,323 - MIT1002_00716 0.19 -1.0 783,323 - MIT1002_00716 0.19 -0.2 783,366 + MIT1002_00716 0.21 -2.4 783,377 + MIT1002_00716 0.21 -1.3 783,396 + MIT1002_00716 0.22 -1.1 783,409 - MIT1002_00716 0.23 -1.2 783,466 + MIT1002_00716 0.26 -1.3 783,466 + MIT1002_00716 0.26 -0.3 783,480 + MIT1002_00716 0.27 -1.1 783,488 - MIT1002_00716 0.27 +0.5 783,508 + MIT1002_00716 0.28 -0.5 783,596 + MIT1002_00716 0.33 -1.6 783,633 + MIT1002_00716 0.35 +0.6 783,731 + MIT1002_00716 0.40 -1.8 783,731 + MIT1002_00716 0.40 +0.5 783,731 + MIT1002_00716 0.40 -1.2 783,739 - MIT1002_00716 0.40 -0.5 783,781 + MIT1002_00716 0.42 +0.0 783,781 + MIT1002_00716 0.42 -0.5 783,829 + MIT1002_00716 0.45 -1.9 783,832 - MIT1002_00716 0.45 -2.1 783,839 + MIT1002_00716 0.45 -2.4 783,847 - MIT1002_00716 0.46 -1.8 783,897 + MIT1002_00716 0.48 -0.1 783,912 + MIT1002_00716 0.49 +1.5 783,920 - MIT1002_00716 0.49 +0.8 783,926 + MIT1002_00716 0.50 +0.5 783,937 - MIT1002_00716 0.50 +0.0 783,948 + MIT1002_00716 0.51 -1.8 783,948 + MIT1002_00716 0.51 -2.2 783,960 - MIT1002_00716 0.51 +0.2 783,972 - MIT1002_00716 0.52 -1.9 783,972 - MIT1002_00716 0.52 -3.2 783,972 - MIT1002_00716 0.52 -1.1 784,058 + MIT1002_00716 0.56 -1.0 784,058 + MIT1002_00716 0.56 +1.2 784,080 + MIT1002_00716 0.57 -0.9 784,123 + MIT1002_00716 0.60 -0.5 784,289 - MIT1002_00716 0.68 -2.2 784,330 - MIT1002_00716 0.70 -1.5 784,340 - MIT1002_00716 0.71 +1.1 784,371 + MIT1002_00716 0.72 -1.1 784,371 - MIT1002_00716 0.72 -1.7 784,385 - MIT1002_00716 0.73 +0.7 784,395 + MIT1002_00716 0.74 -1.2 784,424 + MIT1002_00716 0.75 -2.0 784,427 - MIT1002_00716 0.75 -0.5 784,439 - MIT1002_00716 0.76 -0.1 784,478 + MIT1002_00716 0.78 -1.1 784,493 + MIT1002_00716 0.79 +0.7 784,503 + MIT1002_00716 0.79 -0.4 784,511 - MIT1002_00716 0.80 -0.7 784,530 + MIT1002_00716 0.80 -1.6 784,543 - MIT1002_00716 0.81 -1.6 784,592 - MIT1002_00716 0.84 -0.5 784,619 + MIT1002_00716 0.85 -0.7 784,619 + MIT1002_00716 0.85 -0.5 784,791 - -1.4 784,814 + -2.3 784,822 + -0.3 784,838 + -3.0 784,848 + -1.6 784,849 - -0.3 784,856 - -1.3 784,856 - -0.5 784,856 - -1.4 784,984 + -2.2 784,985 - -0.3 784,992 - -0.5 785,153 - -1.3 785,211 - -0.5 785,277 - +0.5 785,283 - +0.5 785,394 + +0.7 785,394 + -1.5 785,402 - +0.9 785,409 + +1.4 785,451 + -2.2 785,471 - MIT1002_00718 0.10 -0.4 785,500 - MIT1002_00718 0.13 +0.0 785,526 - MIT1002_00718 0.16 +0.2 785,538 - MIT1002_00718 0.17 +2.5 785,548 + MIT1002_00718 0.18 +1.3 785,564 + MIT1002_00718 0.20 -2.0 785,709 + MIT1002_00718 0.34 +0.3 785,724 + MIT1002_00718 0.36 +0.5 785,739 - MIT1002_00718 0.38 +0.3 785,778 + MIT1002_00718 0.41 +1.0 785,817 - MIT1002_00718 0.45 +0.3 785,833 + MIT1002_00718 0.47 -1.7 785,833 + MIT1002_00718 0.47 +1.0 785,833 + MIT1002_00718 0.47 +0.6 785,845 + MIT1002_00718 0.48 +0.4 785,859 + MIT1002_00718 0.50 +0.2
Or see this region's nucleotide sequence