Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00676 and MIT1002_00677 are separated by 212 nucleotides MIT1002_00677 and MIT1002_00678 are separated by 178 nucleotides
MIT1002_00676: MIT1002_00676 - hypothetical protein, at 740,589 to 741,263
_00676
MIT1002_00677: MIT1002_00677 - Fructose-1-phosphate phosphatase YqaB, at 741,476 to 742,177
_00677
MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651
_00678
Position (kb) 741
742
743 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 740.529 kb on - strand at 740.550 kb on + strand at 740.654 kb on + strand at 740.728 kb on + strand, within MIT1002_00676 at 740.791 kb on - strand, within MIT1002_00676 at 740.816 kb on + strand, within MIT1002_00676 at 740.824 kb on + strand, within MIT1002_00676 at 740.824 kb on - strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.884 kb on - strand, within MIT1002_00676 at 740.922 kb on + strand, within MIT1002_00676 at 741.003 kb on - strand, within MIT1002_00676 at 741.010 kb on + strand, within MIT1002_00676 at 741.026 kb on + strand, within MIT1002_00676 at 741.129 kb on + strand, within MIT1002_00676 at 741.130 kb on - strand, within MIT1002_00676 at 741.132 kb on + strand, within MIT1002_00676 at 741.134 kb on + strand, within MIT1002_00676 at 741.140 kb on - strand, within MIT1002_00676 at 741.174 kb on - strand, within MIT1002_00676 at 741.309 kb on + strand at 741.309 kb on + strand at 741.312 kb on - strand at 741.314 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.348 kb on - strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.408 kb on - strand at 741.417 kb on + strand at 741.425 kb on - strand at 741.484 kb on + strand at 741.501 kb on - strand at 741.727 kb on + strand, within MIT1002_00677 at 741.818 kb on - strand, within MIT1002_00677 at 741.818 kb on - strand, within MIT1002_00677 at 741.840 kb on - strand, within MIT1002_00677 at 741.848 kb on - strand, within MIT1002_00677 at 741.916 kb on - strand, within MIT1002_00677 at 741.941 kb on + strand, within MIT1002_00677 at 741.949 kb on + strand, within MIT1002_00677 at 741.949 kb on + strand, within MIT1002_00677 at 741.957 kb on - strand, within MIT1002_00677 at 741.977 kb on - strand, within MIT1002_00677 at 741.977 kb on - strand, within MIT1002_00677 at 742.064 kb on + strand, within MIT1002_00677 at 742.064 kb on + strand, within MIT1002_00677 at 742.072 kb on - strand, within MIT1002_00677 at 742.072 kb on - strand, within MIT1002_00677 at 742.127 kb on + strand at 742.132 kb on + strand at 742.191 kb on + strand at 742.256 kb on - strand at 742.261 kb on + strand at 742.377 kb on - strand at 742.407 kb on + strand at 742.479 kb on - strand at 742.488 kb on + strand, within MIT1002_00678 at 742.488 kb on + strand, within MIT1002_00678 at 742.492 kb on - strand, within MIT1002_00678 at 742.498 kb on - strand, within MIT1002_00678 at 742.498 kb on - strand, within MIT1002_00678 at 742.515 kb on - strand, within MIT1002_00678 at 742.518 kb on - strand, within MIT1002_00678 at 742.562 kb on - strand, within MIT1002_00678 at 742.577 kb on + strand, within MIT1002_00678 at 742.608 kb on + strand, within MIT1002_00678 at 742.608 kb on + strand, within MIT1002_00678 at 742.608 kb on + strand, within MIT1002_00678 at 742.608 kb on + strand, within MIT1002_00678 at 742.608 kb on + strand, within MIT1002_00678 at 742.610 kb on + strand, within MIT1002_00678 at 742.616 kb on - strand, within MIT1002_00678 at 742.616 kb on - strand, within MIT1002_00678 at 742.616 kb on - strand, within MIT1002_00678 at 742.631 kb on + strand, within MIT1002_00678 at 742.631 kb on + strand, within MIT1002_00678 at 742.631 kb on + strand, within MIT1002_00678 at 742.711 kb on - strand, within MIT1002_00678 at 742.723 kb on + strand, within MIT1002_00678 at 742.775 kb on - strand, within MIT1002_00678 at 742.834 kb on - strand, within MIT1002_00678 at 742.918 kb on + strand, within MIT1002_00678 at 742.918 kb on + strand, within MIT1002_00678 at 743.039 kb on - strand, within MIT1002_00678 at 743.127 kb on + strand, within MIT1002_00678
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 740,529 - -0.5 740,550 + -0.6 740,654 + +1.3 740,728 + MIT1002_00676 0.21 -0.4 740,791 - MIT1002_00676 0.30 +0.0 740,816 + MIT1002_00676 0.34 +0.8 740,824 + MIT1002_00676 0.35 -1.1 740,824 - MIT1002_00676 0.35 +0.7 740,852 + MIT1002_00676 0.39 -0.5 740,852 + MIT1002_00676 0.39 -0.2 740,852 + MIT1002_00676 0.39 -0.4 740,860 - MIT1002_00676 0.40 +0.4 740,860 - MIT1002_00676 0.40 +0.3 740,860 - MIT1002_00676 0.40 +0.9 740,860 - MIT1002_00676 0.40 -1.1 740,884 - MIT1002_00676 0.44 -0.4 740,922 + MIT1002_00676 0.49 -2.3 741,003 - MIT1002_00676 0.61 +0.7 741,010 + MIT1002_00676 0.62 +1.7 741,026 + MIT1002_00676 0.65 -0.2 741,129 + MIT1002_00676 0.80 -1.2 741,130 - MIT1002_00676 0.80 -1.4 741,132 + MIT1002_00676 0.80 -1.4 741,134 + MIT1002_00676 0.81 -0.7 741,140 - MIT1002_00676 0.82 -1.7 741,174 - MIT1002_00676 0.87 -0.1 741,309 + -1.3 741,309 + -1.1 741,312 - -1.3 741,314 + +0.4 741,330 + +1.3 741,330 + -2.1 741,330 + +0.1 741,338 - +1.1 741,338 - -0.3 741,338 - -0.9 741,348 - -0.4 741,392 + +0.6 741,392 + -0.3 741,392 + +0.1 741,400 - +0.0 741,400 - -0.2 741,400 - +0.8 741,408 - -0.0 741,417 + +1.2 741,425 - +0.1 741,484 + +0.4 741,501 - -0.8 741,727 + MIT1002_00677 0.36 -1.3 741,818 - MIT1002_00677 0.49 +0.4 741,818 - MIT1002_00677 0.49 -1.8 741,840 - MIT1002_00677 0.52 -2.3 741,848 - MIT1002_00677 0.53 +0.9 741,916 - MIT1002_00677 0.63 +0.8 741,941 + MIT1002_00677 0.66 +0.6 741,949 + MIT1002_00677 0.67 +0.7 741,949 + MIT1002_00677 0.67 +0.9 741,957 - MIT1002_00677 0.69 +0.8 741,977 - MIT1002_00677 0.71 +0.5 741,977 - MIT1002_00677 0.71 +1.0 742,064 + MIT1002_00677 0.84 +0.8 742,064 + MIT1002_00677 0.84 -1.1 742,072 - MIT1002_00677 0.85 -0.2 742,072 - MIT1002_00677 0.85 +0.6 742,127 + -0.4 742,132 + +0.2 742,191 + -1.3 742,256 - -3.3 742,261 + +1.5 742,377 - -0.2 742,407 + -0.0 742,479 - +0.4 742,488 + MIT1002_00678 0.10 -0.3 742,488 + MIT1002_00678 0.10 -0.7 742,492 - MIT1002_00678 0.10 -0.2 742,498 - MIT1002_00678 0.11 -1.1 742,498 - MIT1002_00678 0.11 +0.4 742,515 - MIT1002_00678 0.12 -3.1 742,518 - MIT1002_00678 0.12 +0.9 742,562 - MIT1002_00678 0.16 +0.9 742,577 + MIT1002_00678 0.17 -0.0 742,608 + MIT1002_00678 0.19 -0.4 742,608 + MIT1002_00678 0.19 -0.0 742,608 + MIT1002_00678 0.19 +0.3 742,608 + MIT1002_00678 0.19 +0.5 742,608 + MIT1002_00678 0.19 -0.5 742,610 + MIT1002_00678 0.20 -0.8 742,616 - MIT1002_00678 0.20 -2.0 742,616 - MIT1002_00678 0.20 -0.9 742,616 - MIT1002_00678 0.20 +2.1 742,631 + MIT1002_00678 0.21 -1.8 742,631 + MIT1002_00678 0.21 -0.5 742,631 + MIT1002_00678 0.21 -1.5 742,711 - MIT1002_00678 0.27 +0.6 742,723 + MIT1002_00678 0.28 -0.7 742,775 - MIT1002_00678 0.32 -1.1 742,834 - MIT1002_00678 0.37 +0.6 742,918 + MIT1002_00678 0.43 +0.6 742,918 + MIT1002_00678 0.43 +0.4 743,039 - MIT1002_00678 0.53 +0.9 743,127 + MIT1002_00678 0.59 -1.1
Or see this region's nucleotide sequence