Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00663

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00662 and MIT1002_00663 are separated by 234 nucleotidesMIT1002_00663 and MIT1002_00664 are separated by 7 nucleotides MIT1002_00662: MIT1002_00662 - putative HTH-type transcriptional regulator YdcR, at 721,996 to 723,393 _00662 MIT1002_00663: MIT1002_00663 - cytochrome c oxidase accessory protein CcoG, at 723,628 to 725,001 _00663 MIT1002_00664: MIT1002_00664 - hypothetical protein, at 725,009 to 726,013 _00664 Position (kb) 723 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 722.644 kb on - strand, within MIT1002_00662at 722.654 kb on + strand, within MIT1002_00662at 722.662 kb on - strand, within MIT1002_00662at 722.664 kb on + strand, within MIT1002_00662at 722.704 kb on + strand, within MIT1002_00662at 722.718 kb on - strand, within MIT1002_00662at 722.751 kb on - strand, within MIT1002_00662at 722.799 kb on + strand, within MIT1002_00662at 722.804 kb on + strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.807 kb on - strand, within MIT1002_00662at 722.838 kb on + strand, within MIT1002_00662at 722.838 kb on + strand, within MIT1002_00662at 722.839 kb on - strand, within MIT1002_00662at 722.846 kb on - strand, within MIT1002_00662at 722.861 kb on - strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.937 kb on + strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.945 kb on - strand, within MIT1002_00662at 722.950 kb on - strand, within MIT1002_00662at 723.002 kb on - strand, within MIT1002_00662at 723.037 kb on + strand, within MIT1002_00662at 723.038 kb on - strand, within MIT1002_00662at 723.122 kb on - strand, within MIT1002_00662at 723.199 kb on + strand, within MIT1002_00662at 723.260 kb on - strandat 723.323 kb on + strandat 723.333 kb on + strandat 723.559 kb on + strandat 723.559 kb on + strandat 723.659 kb on - strandat 723.665 kb on - strandat 723.822 kb on - strand, within MIT1002_00663at 723.859 kb on + strand, within MIT1002_00663at 723.949 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.960 kb on + strand, within MIT1002_00663at 723.987 kb on + strand, within MIT1002_00663at 723.992 kb on + strand, within MIT1002_00663at 724.047 kb on + strand, within MIT1002_00663at 724.047 kb on + strand, within MIT1002_00663at 724.079 kb on + strand, within MIT1002_00663at 724.099 kb on - strand, within MIT1002_00663at 724.102 kb on + strand, within MIT1002_00663at 724.192 kb on + strand, within MIT1002_00663at 724.223 kb on - strand, within MIT1002_00663at 724.347 kb on - strand, within MIT1002_00663at 724.364 kb on + strand, within MIT1002_00663at 724.394 kb on - strand, within MIT1002_00663at 724.426 kb on + strand, within MIT1002_00663at 724.434 kb on - strand, within MIT1002_00663at 724.439 kb on - strand, within MIT1002_00663at 724.444 kb on - strand, within MIT1002_00663at 724.479 kb on + strand, within MIT1002_00663at 724.487 kb on - strand, within MIT1002_00663at 724.492 kb on - strand, within MIT1002_00663at 724.492 kb on - strand, within MIT1002_00663at 724.496 kb on + strand, within MIT1002_00663at 724.504 kb on - strand, within MIT1002_00663at 724.629 kb on + strand, within MIT1002_00663at 724.649 kb on - strand, within MIT1002_00663at 724.665 kb on + strand, within MIT1002_00663at 724.723 kb on - strand, within MIT1002_00663at 724.734 kb on + strand, within MIT1002_00663at 724.742 kb on - strand, within MIT1002_00663at 724.770 kb on + strand, within MIT1002_00663at 724.823 kb on - strand, within MIT1002_00663at 724.838 kb on + strand, within MIT1002_00663at 724.843 kb on + strand, within MIT1002_00663at 724.846 kb on - strand, within MIT1002_00663at 724.896 kb on + strandat 724.896 kb on + strandat 724.904 kb on - strandat 724.904 kb on - strandat 724.904 kb on - strandat 724.957 kb on - strandat 724.979 kb on - strandat 725.054 kb on + strandat 725.103 kb on + strandat 725.147 kb on + strand, within MIT1002_00664at 725.172 kb on + strand, within MIT1002_00664at 725.265 kb on + strand, within MIT1002_00664at 725.267 kb on - strand, within MIT1002_00664at 725.267 kb on - strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.277 kb on + strand, within MIT1002_00664at 725.282 kb on + strand, within MIT1002_00664at 725.290 kb on - strand, within MIT1002_00664at 725.298 kb on + strand, within MIT1002_00664at 725.327 kb on - strand, within MIT1002_00664at 725.341 kb on + strand, within MIT1002_00664at 725.359 kb on - strand, within MIT1002_00664at 725.658 kb on + strand, within MIT1002_00664at 725.660 kb on - strand, within MIT1002_00664at 725.687 kb on + strand, within MIT1002_00664at 725.689 kb on - strand, within MIT1002_00664at 725.695 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.711 kb on - strand, within MIT1002_00664at 725.747 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.793 kb on - strand, within MIT1002_00664at 725.827 kb on - strand, within MIT1002_00664at 725.829 kb on - strand, within MIT1002_00664at 725.893 kb on + strand, within MIT1002_00664at 725.900 kb on - strand, within MIT1002_00664at 725.949 kb on - strandat 725.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
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722,644 - MIT1002_00662 0.46 -0.7
722,654 + MIT1002_00662 0.47 -0.5
722,662 - MIT1002_00662 0.48 +0.3
722,664 + MIT1002_00662 0.48 -2.0
722,704 + MIT1002_00662 0.51 -0.5
722,718 - MIT1002_00662 0.52 -0.6
722,751 - MIT1002_00662 0.54 +0.2
722,799 + MIT1002_00662 0.57 +0.3
722,804 + MIT1002_00662 0.58 +0.0
722,807 - MIT1002_00662 0.58 -0.2
722,807 - MIT1002_00662 0.58 -0.1
722,807 - MIT1002_00662 0.58 +0.2
722,838 + MIT1002_00662 0.60 +0.8
722,838 + MIT1002_00662 0.60 -2.2
722,839 - MIT1002_00662 0.60 +1.2
722,846 - MIT1002_00662 0.61 -0.1
722,861 - MIT1002_00662 0.62 -0.1
722,937 + MIT1002_00662 0.67 -0.8
722,937 + MIT1002_00662 0.67 +1.1
722,937 + MIT1002_00662 0.67 +0.8
722,937 + MIT1002_00662 0.67 +0.7
722,945 - MIT1002_00662 0.68 -1.6
722,945 - MIT1002_00662 0.68 +0.3
722,945 - MIT1002_00662 0.68 -1.2
722,945 - MIT1002_00662 0.68 -0.8
722,945 - MIT1002_00662 0.68 -0.5
722,945 - MIT1002_00662 0.68 -0.5
722,945 - MIT1002_00662 0.68 -0.4
722,950 - MIT1002_00662 0.68 +1.0
723,002 - MIT1002_00662 0.72 -1.8
723,037 + MIT1002_00662 0.74 -0.0
723,038 - MIT1002_00662 0.75 -0.7
723,122 - MIT1002_00662 0.81 -0.5
723,199 + MIT1002_00662 0.86 +0.5
723,260 - +1.1
723,323 + +0.3
723,333 + -0.2
723,559 + +0.0
723,559 + +1.0
723,659 - -1.2
723,665 - +0.4
723,822 - MIT1002_00663 0.14 +1.3
723,859 + MIT1002_00663 0.17 +0.5
723,949 + MIT1002_00663 0.23 -1.8
723,960 + MIT1002_00663 0.24 -0.0
723,960 + MIT1002_00663 0.24 +0.7
723,960 + MIT1002_00663 0.24 +1.2
723,987 + MIT1002_00663 0.26 +0.8
723,992 + MIT1002_00663 0.26 -0.1
724,047 + MIT1002_00663 0.30 +0.1
724,047 + MIT1002_00663 0.30 -1.3
724,079 + MIT1002_00663 0.33 -0.1
724,099 - MIT1002_00663 0.34 -0.6
724,102 + MIT1002_00663 0.34 +0.2
724,192 + MIT1002_00663 0.41 +0.5
724,223 - MIT1002_00663 0.43 -1.4
724,347 - MIT1002_00663 0.52 -0.1
724,364 + MIT1002_00663 0.54 -0.1
724,394 - MIT1002_00663 0.56 +0.3
724,426 + MIT1002_00663 0.58 -2.0
724,434 - MIT1002_00663 0.59 -0.5
724,439 - MIT1002_00663 0.59 +0.4
724,444 - MIT1002_00663 0.59 +0.2
724,479 + MIT1002_00663 0.62 +1.2
724,487 - MIT1002_00663 0.63 +1.3
724,492 - MIT1002_00663 0.63 -0.5
724,492 - MIT1002_00663 0.63 +1.2
724,496 + MIT1002_00663 0.63 -0.5
724,504 - MIT1002_00663 0.64 +0.6
724,629 + MIT1002_00663 0.73 +1.0
724,649 - MIT1002_00663 0.74 +0.8
724,665 + MIT1002_00663 0.75 +2.0
724,723 - MIT1002_00663 0.80 -0.7
724,734 + MIT1002_00663 0.80 -0.0
724,742 - MIT1002_00663 0.81 +0.2
724,770 + MIT1002_00663 0.83 -0.4
724,823 - MIT1002_00663 0.87 -0.7
724,838 + MIT1002_00663 0.88 -0.2
724,843 + MIT1002_00663 0.88 +1.5
724,846 - MIT1002_00663 0.89 +0.9
724,896 + +0.3
724,896 + +1.1
724,904 - -1.0
724,904 - -1.2
724,904 - +0.6
724,957 - +0.1
724,979 - +0.4
725,054 + +0.5
725,103 + -1.7
725,147 + MIT1002_00664 0.14 +0.4
725,172 + MIT1002_00664 0.16 +1.8
725,265 + MIT1002_00664 0.25 -0.3
725,267 - MIT1002_00664 0.26 -1.0
725,267 - MIT1002_00664 0.26 -0.2
725,275 + MIT1002_00664 0.26 +0.2
725,275 + MIT1002_00664 0.26 -0.3
725,275 + MIT1002_00664 0.26 -0.7
725,275 + MIT1002_00664 0.26 +0.5
725,277 + MIT1002_00664 0.27 -0.6
725,282 + MIT1002_00664 0.27 +1.0
725,290 - MIT1002_00664 0.28 -0.6
725,298 + MIT1002_00664 0.29 -0.0
725,327 - MIT1002_00664 0.32 -0.2
725,341 + MIT1002_00664 0.33 +0.2
725,359 - MIT1002_00664 0.35 -0.5
725,658 + MIT1002_00664 0.65 -0.4
725,660 - MIT1002_00664 0.65 -0.1
725,687 + MIT1002_00664 0.67 -0.0
725,689 - MIT1002_00664 0.68 +0.9
725,695 + MIT1002_00664 0.68 +1.2
725,703 + MIT1002_00664 0.69 -0.8
725,703 + MIT1002_00664 0.69 +0.2
725,703 + MIT1002_00664 0.69 +0.0
725,711 - MIT1002_00664 0.70 +1.5
725,747 - MIT1002_00664 0.73 -0.1
725,782 - MIT1002_00664 0.77 -2.1
725,782 - MIT1002_00664 0.77 +2.0
725,782 - MIT1002_00664 0.77 -0.3
725,793 - MIT1002_00664 0.78 -0.2
725,827 - MIT1002_00664 0.81 +0.5
725,829 - MIT1002_00664 0.82 -0.2
725,893 + MIT1002_00664 0.88 +1.3
725,900 - MIT1002_00664 0.89 +2.3
725,949 - -0.1
725,962 + -1.2

Or see this region's nucleotide sequence