Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00656

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00655 and MIT1002_00656 are separated by 43 nucleotidesMIT1002_00656 and MIT1002_00657 are separated by 142 nucleotides MIT1002_00655: MIT1002_00655 - muropeptide transporter, at 711,960 to 713,306 _00655 MIT1002_00656: MIT1002_00656 - hypothetical protein, at 713,350 to 713,673 _00656 MIT1002_00657: MIT1002_00657 - hypothetical protein, at 713,816 to 714,703 _00657 Position (kb) 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 712.404 kb on - strand, within MIT1002_00655at 712.465 kb on + strand, within MIT1002_00655at 712.580 kb on + strand, within MIT1002_00655at 712.585 kb on + strand, within MIT1002_00655at 712.692 kb on + strand, within MIT1002_00655at 712.702 kb on + strand, within MIT1002_00655at 712.780 kb on - strand, within MIT1002_00655at 712.788 kb on + strand, within MIT1002_00655at 712.788 kb on + strand, within MIT1002_00655at 712.788 kb on + strand, within MIT1002_00655at 712.806 kb on + strand, within MIT1002_00655at 712.817 kb on + strand, within MIT1002_00655at 712.859 kb on - strand, within MIT1002_00655at 712.896 kb on - strand, within MIT1002_00655at 712.944 kb on + strand, within MIT1002_00655at 712.967 kb on + strand, within MIT1002_00655at 712.976 kb on + strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.023 kb on + strand, within MIT1002_00655at 713.030 kb on - strand, within MIT1002_00655at 713.034 kb on + strand, within MIT1002_00655at 713.066 kb on + strand, within MIT1002_00655at 713.066 kb on + strand, within MIT1002_00655at 713.074 kb on - strand, within MIT1002_00655at 713.118 kb on + strand, within MIT1002_00655at 713.126 kb on - strand, within MIT1002_00655at 713.133 kb on + strand, within MIT1002_00655at 713.141 kb on - strand, within MIT1002_00655at 713.141 kb on - strand, within MIT1002_00655at 713.182 kb on + strandat 713.359 kb on + strandat 713.513 kb on + strand, within MIT1002_00656at 713.513 kb on + strand, within MIT1002_00656at 713.521 kb on - strand, within MIT1002_00656at 713.521 kb on - strand, within MIT1002_00656at 713.531 kb on - strand, within MIT1002_00656at 713.531 kb on - strand, within MIT1002_00656at 713.538 kb on - strand, within MIT1002_00656at 713.594 kb on - strand, within MIT1002_00656at 713.603 kb on - strand, within MIT1002_00656at 713.669 kb on + strandat 713.712 kb on - strandat 713.720 kb on - strandat 713.723 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.735 kb on + strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.742 kb on + strandat 713.742 kb on + strandat 713.993 kb on - strand, within MIT1002_00657at 713.996 kb on - strand, within MIT1002_00657at 713.999 kb on + strand, within MIT1002_00657at 714.046 kb on + strand, within MIT1002_00657at 714.122 kb on - strand, within MIT1002_00657at 714.125 kb on + strand, within MIT1002_00657at 714.159 kb on + strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.175 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.178 kb on + strand, within MIT1002_00657at 714.180 kb on + strand, within MIT1002_00657at 714.187 kb on + strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.204 kb on - strand, within MIT1002_00657at 714.247 kb on + strand, within MIT1002_00657at 714.294 kb on + strand, within MIT1002_00657at 714.302 kb on - strand, within MIT1002_00657at 714.326 kb on - strand, within MIT1002_00657at 714.338 kb on - strand, within MIT1002_00657at 714.377 kb on - strand, within MIT1002_00657at 714.524 kb on + strand, within MIT1002_00657at 714.525 kb on + strand, within MIT1002_00657at 714.525 kb on - strand, within MIT1002_00657at 714.532 kb on - strand, within MIT1002_00657at 714.578 kb on + strand, within MIT1002_00657at 714.586 kb on - strand, within MIT1002_00657at 714.622 kb on - strandat 714.645 kb on + strandat 714.645 kb on + strandat 714.653 kb on - strandat 714.653 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
remove
712,404 - MIT1002_00655 0.33 +0.4
712,465 + MIT1002_00655 0.37 -0.1
712,580 + MIT1002_00655 0.46 +0.5
712,585 + MIT1002_00655 0.46 -0.3
712,692 + MIT1002_00655 0.54 -3.2
712,702 + MIT1002_00655 0.55 +1.2
712,780 - MIT1002_00655 0.61 -1.1
712,788 + MIT1002_00655 0.61 +0.1
712,788 + MIT1002_00655 0.61 -0.2
712,788 + MIT1002_00655 0.61 -0.2
712,806 + MIT1002_00655 0.63 -3.1
712,817 + MIT1002_00655 0.64 -0.4
712,859 - MIT1002_00655 0.67 -3.4
712,896 - MIT1002_00655 0.69 +1.4
712,944 + MIT1002_00655 0.73 +0.5
712,967 + MIT1002_00655 0.75 -0.8
712,976 + MIT1002_00655 0.75 -0.2
712,984 - MIT1002_00655 0.76 +0.4
712,984 - MIT1002_00655 0.76 -0.7
712,984 - MIT1002_00655 0.76 +0.2
713,001 + MIT1002_00655 0.77 -1.5
713,001 + MIT1002_00655 0.77 -0.5
713,001 + MIT1002_00655 0.77 +0.0
713,001 + MIT1002_00655 0.77 -2.8
713,009 - MIT1002_00655 0.78 -0.2
713,009 - MIT1002_00655 0.78 -0.3
713,009 - MIT1002_00655 0.78 -0.4
713,009 - MIT1002_00655 0.78 +1.2
713,009 - MIT1002_00655 0.78 -2.6
713,023 + MIT1002_00655 0.79 -2.2
713,030 - MIT1002_00655 0.79 -1.2
713,034 + MIT1002_00655 0.80 -2.4
713,066 + MIT1002_00655 0.82 -0.2
713,066 + MIT1002_00655 0.82 -0.5
713,074 - MIT1002_00655 0.83 -2.0
713,118 + MIT1002_00655 0.86 +2.6
713,126 - MIT1002_00655 0.87 -0.8
713,133 + MIT1002_00655 0.87 +0.1
713,141 - MIT1002_00655 0.88 -0.8
713,141 - MIT1002_00655 0.88 -2.0
713,182 + -0.4
713,359 + -0.5
713,513 + MIT1002_00656 0.50 -3.1
713,513 + MIT1002_00656 0.50 -1.8
713,521 - MIT1002_00656 0.53 +0.0
713,521 - MIT1002_00656 0.53 -0.8
713,531 - MIT1002_00656 0.56 -0.3
713,531 - MIT1002_00656 0.56 +0.6
713,538 - MIT1002_00656 0.58 -2.3
713,594 - MIT1002_00656 0.75 -1.3
713,603 - MIT1002_00656 0.78 -2.5
713,669 + -0.2
713,712 - -0.6
713,720 - +0.6
713,723 + -0.8
713,730 + -0.6
713,730 + -0.2
713,730 + -0.9
713,730 + -0.8
713,735 + +1.0
713,738 - -0.5
713,738 - +0.1
713,738 - -0.7
713,738 - +1.3
713,738 - -2.9
713,738 - +1.1
713,738 - +0.5
713,738 - +0.4
713,738 - -2.1
713,738 - +0.3
713,742 + -1.5
713,742 + -0.5
713,993 - MIT1002_00657 0.20 +4.2
713,996 - MIT1002_00657 0.20 -0.5
713,999 + MIT1002_00657 0.21 -0.3
714,046 + MIT1002_00657 0.26 +0.3
714,122 - MIT1002_00657 0.34 +1.0
714,125 + MIT1002_00657 0.35 -0.3
714,159 + MIT1002_00657 0.39 +1.1
714,167 - MIT1002_00657 0.40 +0.4
714,167 - MIT1002_00657 0.40 +2.1
714,175 - MIT1002_00657 0.40 +0.5
714,176 - MIT1002_00657 0.41 -0.3
714,176 - MIT1002_00657 0.41 +0.6
714,178 + MIT1002_00657 0.41 +0.3
714,180 + MIT1002_00657 0.41 +0.2
714,187 + MIT1002_00657 0.42 -0.0
714,195 - MIT1002_00657 0.43 +0.8
714,195 - MIT1002_00657 0.43 +0.9
714,204 - MIT1002_00657 0.44 +1.7
714,247 + MIT1002_00657 0.49 +0.4
714,294 + MIT1002_00657 0.54 -0.8
714,302 - MIT1002_00657 0.55 +1.0
714,326 - MIT1002_00657 0.57 -0.5
714,338 - MIT1002_00657 0.59 +0.4
714,377 - MIT1002_00657 0.63 +1.5
714,524 + MIT1002_00657 0.80 +0.7
714,525 + MIT1002_00657 0.80 -0.4
714,525 - MIT1002_00657 0.80 -2.1
714,532 - MIT1002_00657 0.81 +1.3
714,578 + MIT1002_00657 0.86 -0.3
714,586 - MIT1002_00657 0.87 +2.4
714,622 - +0.7
714,645 + -1.4
714,645 + -0.5
714,653 - -0.7
714,653 - -0.9

Or see this region's nucleotide sequence