Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00231

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00230 and MIT1002_00231 overlap by 4 nucleotidesMIT1002_00231 and MIT1002_00232 are separated by 104 nucleotides MIT1002_00230: MIT1002_00230 - peptidase PmbA, at 255,839 to 257,170 _00230 MIT1002_00231: MIT1002_00231 - Methylphosphotriester-DNA--protein-cysteine S-methyltransferase, at 257,167 to 258,021 _00231 MIT1002_00232: MIT1002_00232 - Beta-galactosidase, at 258,126 to 261,245 _00232 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.208 kb on + strand, within MIT1002_00230at 256.351 kb on + strand, within MIT1002_00230at 256.394 kb on - strand, within MIT1002_00230at 256.432 kb on + strand, within MIT1002_00230at 256.432 kb on + strand, within MIT1002_00230at 256.432 kb on + strand, within MIT1002_00230at 256.435 kb on - strand, within MIT1002_00230at 256.505 kb on + strand, within MIT1002_00230at 256.505 kb on + strand, within MIT1002_00230at 256.505 kb on + strand, within MIT1002_00230at 256.521 kb on - strand, within MIT1002_00230at 256.556 kb on + strand, within MIT1002_00230at 256.584 kb on + strand, within MIT1002_00230at 256.694 kb on - strand, within MIT1002_00230at 256.720 kb on + strand, within MIT1002_00230at 256.725 kb on + strand, within MIT1002_00230at 256.809 kb on - strand, within MIT1002_00230at 256.867 kb on - strand, within MIT1002_00230at 256.869 kb on + strand, within MIT1002_00230at 256.894 kb on - strand, within MIT1002_00230at 256.894 kb on - strand, within MIT1002_00230at 256.894 kb on - strand, within MIT1002_00230at 256.894 kb on - strand, within MIT1002_00230at 256.933 kb on - strand, within MIT1002_00230at 256.948 kb on - strand, within MIT1002_00230at 256.997 kb on - strand, within MIT1002_00230at 257.002 kb on - strand, within MIT1002_00230at 257.033 kb on + strand, within MIT1002_00230at 257.046 kb on + strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.120 kb on + strandat 257.120 kb on + strandat 257.128 kb on - strandat 257.128 kb on - strandat 257.130 kb on + strandat 257.162 kb on - strandat 257.177 kb on - strandat 257.259 kb on - strand, within MIT1002_00231at 257.274 kb on + strand, within MIT1002_00231at 257.348 kb on - strand, within MIT1002_00231at 257.348 kb on - strand, within MIT1002_00231at 257.369 kb on - strand, within MIT1002_00231at 257.383 kb on + strand, within MIT1002_00231at 257.383 kb on - strand, within MIT1002_00231at 257.388 kb on + strand, within MIT1002_00231at 257.391 kb on - strand, within MIT1002_00231at 257.395 kb on + strand, within MIT1002_00231at 257.396 kb on - strand, within MIT1002_00231at 257.409 kb on + strand, within MIT1002_00231at 257.529 kb on - strand, within MIT1002_00231at 257.645 kb on + strand, within MIT1002_00231at 257.663 kb on + strand, within MIT1002_00231at 257.663 kb on + strand, within MIT1002_00231at 257.682 kb on - strand, within MIT1002_00231at 257.700 kb on + strand, within MIT1002_00231at 257.700 kb on + strand, within MIT1002_00231at 257.700 kb on + strand, within MIT1002_00231at 257.708 kb on - strand, within MIT1002_00231at 257.708 kb on - strand, within MIT1002_00231at 257.748 kb on + strand, within MIT1002_00231at 257.808 kb on - strand, within MIT1002_00231at 257.882 kb on + strand, within MIT1002_00231at 257.909 kb on - strand, within MIT1002_00231at 257.959 kb on + strandat 257.987 kb on - strandat 257.988 kb on - strandat 258.100 kb on - strandat 258.128 kb on + strandat 258.128 kb on + strandat 258.128 kb on + strandat 258.128 kb on + strandat 258.135 kb on - strandat 258.136 kb on - strandat 258.240 kb on + strandat 258.349 kb on + strandat 258.382 kb on - strandat 258.396 kb on - strandat 258.465 kb on + strand, within MIT1002_00232at 258.465 kb on + strand, within MIT1002_00232at 258.465 kb on + strand, within MIT1002_00232at 258.468 kb on - strand, within MIT1002_00232at 258.468 kb on - strand, within MIT1002_00232at 258.504 kb on + strand, within MIT1002_00232at 258.512 kb on - strand, within MIT1002_00232at 258.512 kb on - strand, within MIT1002_00232at 258.526 kb on + strand, within MIT1002_00232at 258.526 kb on + strand, within MIT1002_00232at 258.526 kb on + strand, within MIT1002_00232at 258.526 kb on + strand, within MIT1002_00232at 258.534 kb on - strand, within MIT1002_00232at 258.558 kb on - strand, within MIT1002_00232at 258.559 kb on + strand, within MIT1002_00232at 258.560 kb on + strand, within MIT1002_00232at 258.568 kb on - strand, within MIT1002_00232at 258.609 kb on + strand, within MIT1002_00232at 258.609 kb on + strand, within MIT1002_00232at 258.615 kb on - strand, within MIT1002_00232at 258.627 kb on - strand, within MIT1002_00232at 258.671 kb on - strand, within MIT1002_00232at 258.681 kb on - strand, within MIT1002_00232at 258.705 kb on - strand, within MIT1002_00232at 258.720 kb on - strand, within MIT1002_00232at 258.720 kb on - strand, within MIT1002_00232at 258.736 kb on + strand, within MIT1002_00232at 258.737 kb on + strand, within MIT1002_00232at 258.814 kb on + strand, within MIT1002_00232at 258.814 kb on + strand, within MIT1002_00232at 258.822 kb on - strand, within MIT1002_00232at 258.822 kb on - strand, within MIT1002_00232at 258.849 kb on - strand, within MIT1002_00232at 258.856 kb on - strand, within MIT1002_00232at 258.937 kb on - strand, within MIT1002_00232

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
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256,208 + MIT1002_00230 0.28 -0.3
256,351 + MIT1002_00230 0.38 +0.1
256,394 - MIT1002_00230 0.42 +1.2
256,432 + MIT1002_00230 0.45 -0.1
256,432 + MIT1002_00230 0.45 +1.1
256,432 + MIT1002_00230 0.45 +0.5
256,435 - MIT1002_00230 0.45 -1.2
256,505 + MIT1002_00230 0.50 -0.9
256,505 + MIT1002_00230 0.50 +0.2
256,505 + MIT1002_00230 0.50 +0.2
256,521 - MIT1002_00230 0.51 +0.4
256,556 + MIT1002_00230 0.54 +1.1
256,584 + MIT1002_00230 0.56 +2.0
256,694 - MIT1002_00230 0.64 +1.0
256,720 + MIT1002_00230 0.66 -0.9
256,725 + MIT1002_00230 0.67 +0.5
256,809 - MIT1002_00230 0.73 +0.5
256,867 - MIT1002_00230 0.77 +1.3
256,869 + MIT1002_00230 0.77 +0.7
256,894 - MIT1002_00230 0.79 -1.0
256,894 - MIT1002_00230 0.79 -0.2
256,894 - MIT1002_00230 0.79 +0.3
256,894 - MIT1002_00230 0.79 +0.3
256,933 - MIT1002_00230 0.82 +0.9
256,948 - MIT1002_00230 0.83 +0.2
256,997 - MIT1002_00230 0.87 -1.0
257,002 - MIT1002_00230 0.87 +0.8
257,033 + MIT1002_00230 0.90 +0.9
257,046 + -0.1
257,115 + +0.2
257,115 + +0.9
257,115 + +0.4
257,120 + +0.2
257,120 + +0.9
257,128 - -0.4
257,128 - -1.0
257,130 + -0.2
257,162 - -0.1
257,177 - -0.1
257,259 - MIT1002_00231 0.11 +0.4
257,274 + MIT1002_00231 0.13 +0.3
257,348 - MIT1002_00231 0.21 +1.3
257,348 - MIT1002_00231 0.21 -1.4
257,369 - MIT1002_00231 0.24 -0.7
257,383 + MIT1002_00231 0.25 +0.1
257,383 - MIT1002_00231 0.25 -0.6
257,388 + MIT1002_00231 0.26 -0.1
257,391 - MIT1002_00231 0.26 -0.6
257,395 + MIT1002_00231 0.27 +0.4
257,396 - MIT1002_00231 0.27 -1.0
257,409 + MIT1002_00231 0.28 +1.5
257,529 - MIT1002_00231 0.42 -2.4
257,645 + MIT1002_00231 0.56 +0.5
257,663 + MIT1002_00231 0.58 -0.3
257,663 + MIT1002_00231 0.58 -1.5
257,682 - MIT1002_00231 0.60 +0.1
257,700 + MIT1002_00231 0.62 -1.3
257,700 + MIT1002_00231 0.62 -1.9
257,700 + MIT1002_00231 0.62 +1.7
257,708 - MIT1002_00231 0.63 +1.1
257,708 - MIT1002_00231 0.63 +0.6
257,748 + MIT1002_00231 0.68 +0.5
257,808 - MIT1002_00231 0.75 +1.2
257,882 + MIT1002_00231 0.84 +0.2
257,909 - MIT1002_00231 0.87 -0.0
257,959 + +0.5
257,987 - +0.2
257,988 - -0.4
258,100 - -0.9
258,128 + +0.9
258,128 + +0.1
258,128 + +0.4
258,128 + -0.0
258,135 - +0.6
258,136 - +1.3
258,240 + -0.1
258,349 + +0.0
258,382 - -1.8
258,396 - +0.5
258,465 + MIT1002_00232 0.11 -0.6
258,465 + MIT1002_00232 0.11 +0.3
258,465 + MIT1002_00232 0.11 +1.4
258,468 - MIT1002_00232 0.11 +1.2
258,468 - MIT1002_00232 0.11 -0.7
258,504 + MIT1002_00232 0.12 -1.0
258,512 - MIT1002_00232 0.12 -2.4
258,512 - MIT1002_00232 0.12 -0.7
258,526 + MIT1002_00232 0.13 -0.6
258,526 + MIT1002_00232 0.13 +0.3
258,526 + MIT1002_00232 0.13 -0.8
258,526 + MIT1002_00232 0.13 +0.1
258,534 - MIT1002_00232 0.13 -0.0
258,558 - MIT1002_00232 0.14 +0.3
258,559 + MIT1002_00232 0.14 +1.0
258,560 + MIT1002_00232 0.14 +0.9
258,568 - MIT1002_00232 0.14 +0.8
258,609 + MIT1002_00232 0.15 +1.2
258,609 + MIT1002_00232 0.15 -0.4
258,615 - MIT1002_00232 0.16 -0.1
258,627 - MIT1002_00232 0.16 +0.2
258,671 - MIT1002_00232 0.17 +0.7
258,681 - MIT1002_00232 0.18 -0.6
258,705 - MIT1002_00232 0.19 -0.3
258,720 - MIT1002_00232 0.19 +1.4
258,720 - MIT1002_00232 0.19 -0.8
258,736 + MIT1002_00232 0.20 -0.6
258,737 + MIT1002_00232 0.20 +0.2
258,814 + MIT1002_00232 0.22 -0.6
258,814 + MIT1002_00232 0.22 +0.9
258,822 - MIT1002_00232 0.22 +0.1
258,822 - MIT1002_00232 0.22 -0.2
258,849 - MIT1002_00232 0.23 -0.8
258,856 - MIT1002_00232 0.23 +0.1
258,937 - MIT1002_00232 0.26 -0.7

Or see this region's nucleotide sequence