Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00226

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00225 and MIT1002_00226 overlap by 8 nucleotidesMIT1002_00226 and MIT1002_00227 overlap by 8 nucleotides MIT1002_00225: MIT1002_00225 - putative protein involved in outer membrane biogenesis, at 248,385 to 252,380 _00225 MIT1002_00226: MIT1002_00226 - (R)-stereoselective amidase, at 252,373 to 253,191 _00226 MIT1002_00227: MIT1002_00227 - protease TldD, at 253,184 to 254,626 _00227 Position (kb) 252 253 254Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 251.403 kb on - strand, within MIT1002_00225at 251.416 kb on + strand, within MIT1002_00225at 251.429 kb on + strand, within MIT1002_00225at 251.455 kb on - strand, within MIT1002_00225at 251.460 kb on - strand, within MIT1002_00225at 251.495 kb on + strand, within MIT1002_00225at 251.495 kb on + strand, within MIT1002_00225at 251.503 kb on - strand, within MIT1002_00225at 251.503 kb on - strand, within MIT1002_00225at 251.532 kb on + strand, within MIT1002_00225at 251.623 kb on - strand, within MIT1002_00225at 251.627 kb on + strand, within MIT1002_00225at 251.673 kb on - strand, within MIT1002_00225at 251.707 kb on + strand, within MIT1002_00225at 251.727 kb on - strand, within MIT1002_00225at 251.785 kb on + strand, within MIT1002_00225at 251.816 kb on - strand, within MIT1002_00225at 251.866 kb on + strand, within MIT1002_00225at 251.874 kb on - strand, within MIT1002_00225at 251.874 kb on - strand, within MIT1002_00225at 251.903 kb on + strand, within MIT1002_00225at 251.995 kb on - strandat 252.102 kb on + strandat 252.110 kb on - strandat 252.146 kb on - strandat 252.167 kb on - strandat 252.177 kb on + strandat 252.177 kb on + strandat 252.185 kb on - strandat 252.185 kb on - strandat 252.204 kb on + strandat 252.229 kb on + strandat 252.273 kb on + strandat 252.281 kb on - strandat 252.283 kb on - strandat 252.311 kb on - strandat 252.352 kb on + strandat 252.353 kb on + strandat 252.401 kb on + strandat 252.409 kb on - strandat 252.489 kb on - strand, within MIT1002_00226at 252.526 kb on + strand, within MIT1002_00226at 252.662 kb on - strand, within MIT1002_00226at 252.830 kb on - strand, within MIT1002_00226at 252.837 kb on + strand, within MIT1002_00226at 252.837 kb on + strand, within MIT1002_00226at 252.837 kb on + strand, within MIT1002_00226at 252.845 kb on - strand, within MIT1002_00226at 252.852 kb on - strand, within MIT1002_00226at 252.852 kb on - strand, within MIT1002_00226at 252.852 kb on - strand, within MIT1002_00226at 252.864 kb on + strand, within MIT1002_00226at 252.908 kb on + strand, within MIT1002_00226at 252.908 kb on + strand, within MIT1002_00226at 252.908 kb on + strand, within MIT1002_00226at 252.908 kb on + strand, within MIT1002_00226at 252.908 kb on + strand, within MIT1002_00226at 252.916 kb on - strand, within MIT1002_00226at 252.916 kb on - strand, within MIT1002_00226at 252.916 kb on - strand, within MIT1002_00226at 252.963 kb on - strand, within MIT1002_00226at 253.040 kb on + strand, within MIT1002_00226at 253.048 kb on - strand, within MIT1002_00226at 253.068 kb on - strand, within MIT1002_00226at 253.223 kb on + strandat 253.231 kb on - strandat 253.275 kb on + strandat 253.374 kb on + strand, within MIT1002_00227at 253.374 kb on + strand, within MIT1002_00227at 253.374 kb on + strand, within MIT1002_00227at 253.374 kb on + strand, within MIT1002_00227at 253.382 kb on - strand, within MIT1002_00227at 253.382 kb on - strand, within MIT1002_00227at 253.481 kb on - strand, within MIT1002_00227at 253.491 kb on + strand, within MIT1002_00227at 253.526 kb on + strand, within MIT1002_00227at 253.700 kb on + strand, within MIT1002_00227at 253.704 kb on - strand, within MIT1002_00227at 253.709 kb on + strand, within MIT1002_00227at 253.740 kb on + strand, within MIT1002_00227at 253.748 kb on - strand, within MIT1002_00227at 253.899 kb on - strand, within MIT1002_00227at 253.926 kb on - strand, within MIT1002_00227at 253.942 kb on + strand, within MIT1002_00227at 253.944 kb on - strand, within MIT1002_00227at 253.950 kb on - strand, within MIT1002_00227at 253.953 kb on + strand, within MIT1002_00227at 253.961 kb on - strand, within MIT1002_00227at 253.961 kb on - strand, within MIT1002_00227at 253.961 kb on - strand, within MIT1002_00227at 254.039 kb on - strand, within MIT1002_00227at 254.172 kb on + strand, within MIT1002_00227at 254.180 kb on - strand, within MIT1002_00227at 254.180 kb on - strand, within MIT1002_00227at 254.190 kb on - strand, within MIT1002_00227

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
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251,403 - MIT1002_00225 0.76 +0.1
251,416 + MIT1002_00225 0.76 -0.9
251,429 + MIT1002_00225 0.76 -0.7
251,455 - MIT1002_00225 0.77 -1.3
251,460 - MIT1002_00225 0.77 +0.9
251,495 + MIT1002_00225 0.78 -1.8
251,495 + MIT1002_00225 0.78 -1.1
251,503 - MIT1002_00225 0.78 -1.7
251,503 - MIT1002_00225 0.78 -1.2
251,532 + MIT1002_00225 0.79 -0.4
251,623 - MIT1002_00225 0.81 -1.3
251,627 + MIT1002_00225 0.81 -2.0
251,673 - MIT1002_00225 0.82 -1.6
251,707 + MIT1002_00225 0.83 -1.4
251,727 - MIT1002_00225 0.84 -2.2
251,785 + MIT1002_00225 0.85 -0.9
251,816 - MIT1002_00225 0.86 +0.5
251,866 + MIT1002_00225 0.87 -0.9
251,874 - MIT1002_00225 0.87 -1.9
251,874 - MIT1002_00225 0.87 -0.7
251,903 + MIT1002_00225 0.88 -0.2
251,995 - -4.3
252,102 + -0.9
252,110 - -1.9
252,146 - -1.8
252,167 - +1.9
252,177 + -1.0
252,177 + -0.0
252,185 - +0.2
252,185 - -1.8
252,204 + -0.8
252,229 + +0.5
252,273 + -0.4
252,281 - -0.1
252,283 - +0.8
252,311 - -0.0
252,352 + -0.6
252,353 + +0.9
252,401 + -2.4
252,409 - -0.3
252,489 - MIT1002_00226 0.14 -1.3
252,526 + MIT1002_00226 0.19 +0.1
252,662 - MIT1002_00226 0.35 -0.8
252,830 - MIT1002_00226 0.56 -1.6
252,837 + MIT1002_00226 0.57 -0.3
252,837 + MIT1002_00226 0.57 -0.8
252,837 + MIT1002_00226 0.57 -1.0
252,845 - MIT1002_00226 0.58 +0.6
252,852 - MIT1002_00226 0.58 -0.6
252,852 - MIT1002_00226 0.58 -0.3
252,852 - MIT1002_00226 0.58 -0.7
252,864 + MIT1002_00226 0.60 -3.4
252,908 + MIT1002_00226 0.65 -2.1
252,908 + MIT1002_00226 0.65 -0.9
252,908 + MIT1002_00226 0.65 -1.2
252,908 + MIT1002_00226 0.65 +0.4
252,908 + MIT1002_00226 0.65 -1.1
252,916 - MIT1002_00226 0.66 -0.8
252,916 - MIT1002_00226 0.66 +0.9
252,916 - MIT1002_00226 0.66 -2.1
252,963 - MIT1002_00226 0.72 -1.5
253,040 + MIT1002_00226 0.81 -1.0
253,048 - MIT1002_00226 0.82 -0.3
253,068 - MIT1002_00226 0.85 +1.1
253,223 + -1.9
253,231 - +0.1
253,275 + +0.1
253,374 + MIT1002_00227 0.13 +0.2
253,374 + MIT1002_00227 0.13 +3.1
253,374 + MIT1002_00227 0.13 +0.7
253,374 + MIT1002_00227 0.13 +1.7
253,382 - MIT1002_00227 0.14 +0.7
253,382 - MIT1002_00227 0.14 +1.9
253,481 - MIT1002_00227 0.21 +0.1
253,491 + MIT1002_00227 0.21 +0.7
253,526 + MIT1002_00227 0.24 +0.5
253,700 + MIT1002_00227 0.36 +0.4
253,704 - MIT1002_00227 0.36 -1.1
253,709 + MIT1002_00227 0.36 +1.3
253,740 + MIT1002_00227 0.39 +0.2
253,748 - MIT1002_00227 0.39 -0.5
253,899 - MIT1002_00227 0.50 +0.5
253,926 - MIT1002_00227 0.51 -0.2
253,942 + MIT1002_00227 0.53 -0.2
253,944 - MIT1002_00227 0.53 +0.7
253,950 - MIT1002_00227 0.53 -0.6
253,953 + MIT1002_00227 0.53 -1.3
253,961 - MIT1002_00227 0.54 -0.1
253,961 - MIT1002_00227 0.54 -0.3
253,961 - MIT1002_00227 0.54 +0.4
254,039 - MIT1002_00227 0.59 +0.5
254,172 + MIT1002_00227 0.68 -0.5
254,180 - MIT1002_00227 0.69 +0.2
254,180 - MIT1002_00227 0.69 +0.3
254,190 - MIT1002_00227 0.70 +1.2

Or see this region's nucleotide sequence