Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00190

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00189 and MIT1002_00190 are separated by 357 nucleotidesMIT1002_00190 and MIT1002_00191 are separated by 267 nucleotides MIT1002_00189: MIT1002_00189 - Galactokinase, at 205,697 to 206,836 _00189 MIT1002_00190: MIT1002_00190 - Na(+)/glucose symporter, at 207,194 to 208,756 _00190 MIT1002_00191: MIT1002_00191 - Helix-destabilizing protein, at 209,024 to 209,650 _00191 Position (kb) 207 208 209Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 206.252 kb on - strand, within MIT1002_00189at 206.346 kb on - strand, within MIT1002_00189at 206.362 kb on - strand, within MIT1002_00189at 206.384 kb on - strand, within MIT1002_00189at 206.395 kb on + strand, within MIT1002_00189at 206.403 kb on - strand, within MIT1002_00189at 206.446 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.540 kb on - strand, within MIT1002_00189at 206.557 kb on + strand, within MIT1002_00189at 206.579 kb on + strand, within MIT1002_00189at 206.715 kb on + strand, within MIT1002_00189at 206.723 kb on - strandat 206.724 kb on - strandat 206.760 kb on - strandat 206.783 kb on + strandat 206.790 kb on + strandat 206.793 kb on - strandat 206.806 kb on + strandat 206.806 kb on + strandat 206.811 kb on + strandat 206.811 kb on + strandat 206.811 kb on + strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.819 kb on - strandat 206.877 kb on - strandat 206.888 kb on + strandat 206.922 kb on - strandat 206.922 kb on - strandat 206.935 kb on - strandat 207.033 kb on - strandat 207.138 kb on + strandat 207.148 kb on - strandat 207.278 kb on + strandat 207.295 kb on - strandat 207.326 kb on + strandat 207.365 kb on + strand, within MIT1002_00190at 207.407 kb on + strand, within MIT1002_00190at 207.415 kb on - strand, within MIT1002_00190at 207.427 kb on - strand, within MIT1002_00190at 207.453 kb on + strand, within MIT1002_00190at 207.461 kb on - strand, within MIT1002_00190at 207.579 kb on + strand, within MIT1002_00190at 207.604 kb on + strand, within MIT1002_00190at 207.612 kb on - strand, within MIT1002_00190at 207.617 kb on - strand, within MIT1002_00190at 207.654 kb on - strand, within MIT1002_00190at 207.689 kb on - strand, within MIT1002_00190at 207.710 kb on + strand, within MIT1002_00190at 207.710 kb on - strand, within MIT1002_00190at 207.737 kb on - strand, within MIT1002_00190at 207.737 kb on - strand, within MIT1002_00190at 207.763 kb on + strand, within MIT1002_00190at 207.781 kb on + strand, within MIT1002_00190at 207.795 kb on - strand, within MIT1002_00190at 207.827 kb on - strand, within MIT1002_00190at 207.840 kb on + strand, within MIT1002_00190at 207.901 kb on + strand, within MIT1002_00190at 207.906 kb on + strand, within MIT1002_00190at 207.972 kb on + strand, within MIT1002_00190at 207.972 kb on + strand, within MIT1002_00190at 207.980 kb on - strand, within MIT1002_00190at 207.980 kb on - strand, within MIT1002_00190at 208.093 kb on + strand, within MIT1002_00190at 208.116 kb on - strand, within MIT1002_00190at 208.166 kb on + strand, within MIT1002_00190at 208.189 kb on + strand, within MIT1002_00190at 208.189 kb on - strand, within MIT1002_00190at 208.204 kb on - strand, within MIT1002_00190at 208.216 kb on + strand, within MIT1002_00190at 208.224 kb on - strand, within MIT1002_00190at 208.361 kb on - strand, within MIT1002_00190at 208.426 kb on + strand, within MIT1002_00190at 208.491 kb on + strand, within MIT1002_00190at 208.493 kb on + strand, within MIT1002_00190at 208.514 kb on - strand, within MIT1002_00190at 208.535 kb on - strand, within MIT1002_00190at 208.548 kb on + strand, within MIT1002_00190at 208.561 kb on - strand, within MIT1002_00190at 208.577 kb on + strand, within MIT1002_00190at 208.661 kb on - strandat 208.675 kb on + strandat 208.683 kb on - strandat 208.723 kb on + strandat 208.724 kb on - strandat 208.886 kb on - strandat 208.886 kb on - strandat 208.886 kb on - strandat 208.886 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
remove
206,252 - MIT1002_00189 0.49 -2.2
206,346 - MIT1002_00189 0.57 -3.3
206,362 - MIT1002_00189 0.58 -3.0
206,384 - MIT1002_00189 0.60 -9.7
206,395 + MIT1002_00189 0.61 -1.3
206,403 - MIT1002_00189 0.62 -1.6
206,446 + MIT1002_00189 0.66 -2.2
206,506 + MIT1002_00189 0.71 -3.2
206,506 + MIT1002_00189 0.71 -4.7
206,540 - MIT1002_00189 0.74 -4.9
206,557 + MIT1002_00189 0.75 -3.2
206,579 + MIT1002_00189 0.77 -3.6
206,715 + MIT1002_00189 0.89 -1.0
206,723 - -4.8
206,724 - -4.1
206,760 - -4.9
206,783 + -5.9
206,790 + -5.8
206,793 - -1.4
206,806 + -0.9
206,806 + -0.2
206,811 + +2.3
206,811 + +2.6
206,811 + +3.0
206,819 - +2.8
206,819 - +2.7
206,819 - +1.7
206,819 - +2.0
206,819 - +2.2
206,819 - +1.8
206,819 - +1.7
206,819 - +2.0
206,877 - +0.1
206,888 + +0.1
206,922 - +0.3
206,922 - +0.5
206,935 - +0.7
207,033 - +0.8
207,138 + +0.2
207,148 - +0.3
207,278 + +1.3
207,295 - -0.5
207,326 + -1.1
207,365 + MIT1002_00190 0.11 -0.1
207,407 + MIT1002_00190 0.14 -0.2
207,415 - MIT1002_00190 0.14 +2.0
207,427 - MIT1002_00190 0.15 +0.6
207,453 + MIT1002_00190 0.17 +0.7
207,461 - MIT1002_00190 0.17 -2.3
207,579 + MIT1002_00190 0.25 +0.9
207,604 + MIT1002_00190 0.26 -0.5
207,612 - MIT1002_00190 0.27 +0.2
207,617 - MIT1002_00190 0.27 +0.0
207,654 - MIT1002_00190 0.29 +0.2
207,689 - MIT1002_00190 0.32 -0.9
207,710 + MIT1002_00190 0.33 -1.2
207,710 - MIT1002_00190 0.33 -0.0
207,737 - MIT1002_00190 0.35 +0.0
207,737 - MIT1002_00190 0.35 -0.2
207,763 + MIT1002_00190 0.36 +0.6
207,781 + MIT1002_00190 0.38 +0.3
207,795 - MIT1002_00190 0.38 +0.4
207,827 - MIT1002_00190 0.40 +0.7
207,840 + MIT1002_00190 0.41 +1.2
207,901 + MIT1002_00190 0.45 -0.0
207,906 + MIT1002_00190 0.46 +0.7
207,972 + MIT1002_00190 0.50 -0.7
207,972 + MIT1002_00190 0.50 +1.5
207,980 - MIT1002_00190 0.50 +2.7
207,980 - MIT1002_00190 0.50 +0.2
208,093 + MIT1002_00190 0.58 +1.6
208,116 - MIT1002_00190 0.59 -0.6
208,166 + MIT1002_00190 0.62 +0.3
208,189 + MIT1002_00190 0.64 +0.2
208,189 - MIT1002_00190 0.64 +1.6
208,204 - MIT1002_00190 0.65 -1.6
208,216 + MIT1002_00190 0.65 -0.6
208,224 - MIT1002_00190 0.66 +0.2
208,361 - MIT1002_00190 0.75 -0.2
208,426 + MIT1002_00190 0.79 +1.3
208,491 + MIT1002_00190 0.83 +0.9
208,493 + MIT1002_00190 0.83 +1.2
208,514 - MIT1002_00190 0.84 +0.4
208,535 - MIT1002_00190 0.86 -0.1
208,548 + MIT1002_00190 0.87 -0.7
208,561 - MIT1002_00190 0.87 +0.2
208,577 + MIT1002_00190 0.88 +0.7
208,661 - +0.7
208,675 + +0.5
208,683 - +0.4
208,723 + +0.4
208,724 - +1.4
208,886 - -0.0
208,886 - -1.2
208,886 - +2.3
208,886 - -1.3

Or see this region's nucleotide sequence