Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00141 and MIT1002_00142 are separated by 173 nucleotides MIT1002_00142 and MIT1002_00143 are separated by 81 nucleotides
MIT1002_00141: MIT1002_00141 - hypothetical protein, at 152,594 to 154,075
_00141
MIT1002_00142: MIT1002_00142 - Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase), at 154,249 to 155,121
_00142
MIT1002_00143: MIT1002_00143 - hypothetical protein, at 155,203 to 156,645
_00143
Position (kb) 154
155
156 Strain fitness (log2 ratio) -1
0
1
2 at 153.267 kb on - strand, within MIT1002_00141 at 153.273 kb on + strand, within MIT1002_00141 at 153.319 kb on - strand, within MIT1002_00141 at 153.400 kb on - strand, within MIT1002_00141 at 153.438 kb on + strand, within MIT1002_00141 at 153.458 kb on - strand, within MIT1002_00141 at 153.521 kb on - strand, within MIT1002_00141 at 153.521 kb on - strand, within MIT1002_00141 at 153.541 kb on + strand, within MIT1002_00141 at 153.554 kb on - strand, within MIT1002_00141 at 153.733 kb on - strand, within MIT1002_00141 at 153.772 kb on + strand, within MIT1002_00141 at 153.853 kb on - strand, within MIT1002_00141 at 153.865 kb on + strand, within MIT1002_00141 at 153.865 kb on + strand, within MIT1002_00141 at 153.873 kb on + strand, within MIT1002_00141 at 153.893 kb on + strand, within MIT1002_00141 at 154.032 kb on - strand at 154.081 kb on + strand at 154.134 kb on - strand at 154.190 kb on - strand at 154.335 kb on + strand at 154.353 kb on - strand, within MIT1002_00142 at 154.388 kb on + strand, within MIT1002_00142 at 154.407 kb on + strand, within MIT1002_00142 at 154.412 kb on + strand, within MIT1002_00142 at 154.412 kb on + strand, within MIT1002_00142 at 154.420 kb on - strand, within MIT1002_00142 at 154.420 kb on - strand, within MIT1002_00142 at 154.450 kb on - strand, within MIT1002_00142 at 154.477 kb on + strand, within MIT1002_00142 at 154.502 kb on + strand, within MIT1002_00142 at 154.510 kb on - strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.576 kb on + strand, within MIT1002_00142 at 154.647 kb on + strand, within MIT1002_00142 at 154.647 kb on + strand, within MIT1002_00142 at 154.652 kb on + strand, within MIT1002_00142 at 154.652 kb on + strand, within MIT1002_00142 at 154.660 kb on - strand, within MIT1002_00142 at 154.744 kb on - strand, within MIT1002_00142 at 154.744 kb on - strand, within MIT1002_00142 at 154.768 kb on + strand, within MIT1002_00142 at 154.776 kb on - strand, within MIT1002_00142 at 154.976 kb on - strand, within MIT1002_00142 at 154.981 kb on - strand, within MIT1002_00142 at 154.993 kb on + strand, within MIT1002_00142 at 154.998 kb on + strand, within MIT1002_00142 at 155.001 kb on - strand, within MIT1002_00142 at 155.006 kb on - strand, within MIT1002_00142 at 155.079 kb on - strand at 155.079 kb on - strand at 155.079 kb on - strand at 155.099 kb on + strand at 155.294 kb on + strand at 155.334 kb on - strand at 155.446 kb on - strand, within MIT1002_00143 at 155.465 kb on + strand, within MIT1002_00143 at 155.465 kb on + strand, within MIT1002_00143 at 155.558 kb on - strand, within MIT1002_00143 at 155.562 kb on + strand, within MIT1002_00143 at 155.562 kb on + strand, within MIT1002_00143 at 155.762 kb on + strand, within MIT1002_00143 at 155.774 kb on - strand, within MIT1002_00143 at 155.807 kb on + strand, within MIT1002_00143 at 155.807 kb on - strand, within MIT1002_00143 at 155.829 kb on - strand, within MIT1002_00143 at 155.866 kb on - strand, within MIT1002_00143 at 155.949 kb on - strand, within MIT1002_00143 at 155.995 kb on - strand, within MIT1002_00143 at 156.009 kb on + strand, within MIT1002_00143 at 156.014 kb on - strand, within MIT1002_00143 at 156.072 kb on - strand, within MIT1002_00143 at 156.082 kb on - strand, within MIT1002_00143
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3 remove 153,267 - MIT1002_00141 0.45 -1.4 153,273 + MIT1002_00141 0.46 +0.4 153,319 - MIT1002_00141 0.49 -0.3 153,400 - MIT1002_00141 0.54 +0.4 153,438 + MIT1002_00141 0.57 -0.4 153,458 - MIT1002_00141 0.58 -1.1 153,521 - MIT1002_00141 0.63 +0.4 153,521 - MIT1002_00141 0.63 +0.3 153,541 + MIT1002_00141 0.64 +0.6 153,554 - MIT1002_00141 0.65 -0.4 153,733 - MIT1002_00141 0.77 +0.6 153,772 + MIT1002_00141 0.79 +1.1 153,853 - MIT1002_00141 0.85 -1.1 153,865 + MIT1002_00141 0.86 +1.6 153,865 + MIT1002_00141 0.86 +0.3 153,873 + MIT1002_00141 0.86 -0.3 153,893 + MIT1002_00141 0.88 -1.6 154,032 - -0.4 154,081 + +1.1 154,134 - +0.6 154,190 - +0.7 154,335 + +1.7 154,353 - MIT1002_00142 0.12 +0.5 154,388 + MIT1002_00142 0.16 +0.6 154,407 + MIT1002_00142 0.18 +0.1 154,412 + MIT1002_00142 0.19 +0.5 154,412 + MIT1002_00142 0.19 +0.1 154,420 - MIT1002_00142 0.20 -0.2 154,420 - MIT1002_00142 0.20 +0.1 154,450 - MIT1002_00142 0.23 +0.2 154,477 + MIT1002_00142 0.26 -0.0 154,502 + MIT1002_00142 0.29 -1.5 154,510 - MIT1002_00142 0.30 +0.0 154,548 + MIT1002_00142 0.34 -1.6 154,548 + MIT1002_00142 0.34 +0.0 154,548 + MIT1002_00142 0.34 +0.2 154,556 - MIT1002_00142 0.35 -1.6 154,556 - MIT1002_00142 0.35 -0.2 154,556 - MIT1002_00142 0.35 -0.2 154,576 + MIT1002_00142 0.37 -0.1 154,647 + MIT1002_00142 0.46 -0.8 154,647 + MIT1002_00142 0.46 -0.7 154,652 + MIT1002_00142 0.46 +0.8 154,652 + MIT1002_00142 0.46 +0.7 154,660 - MIT1002_00142 0.47 +1.0 154,744 - MIT1002_00142 0.57 +0.6 154,744 - MIT1002_00142 0.57 -0.8 154,768 + MIT1002_00142 0.59 -0.4 154,776 - MIT1002_00142 0.60 +0.1 154,976 - MIT1002_00142 0.83 +0.3 154,981 - MIT1002_00142 0.84 -0.3 154,993 + MIT1002_00142 0.85 +0.3 154,998 + MIT1002_00142 0.86 -0.3 155,001 - MIT1002_00142 0.86 -1.0 155,006 - MIT1002_00142 0.87 +0.2 155,079 - +0.0 155,079 - +0.9 155,079 - +0.2 155,099 + +1.9 155,294 + +0.1 155,334 - +1.1 155,446 - MIT1002_00143 0.17 -0.1 155,465 + MIT1002_00143 0.18 +1.6 155,465 + MIT1002_00143 0.18 -0.8 155,558 - MIT1002_00143 0.25 +1.1 155,562 + MIT1002_00143 0.25 +0.3 155,562 + MIT1002_00143 0.25 +0.0 155,762 + MIT1002_00143 0.39 -0.9 155,774 - MIT1002_00143 0.40 -0.7 155,807 + MIT1002_00143 0.42 +0.2 155,807 - MIT1002_00143 0.42 -0.1 155,829 - MIT1002_00143 0.43 -0.2 155,866 - MIT1002_00143 0.46 +1.3 155,949 - MIT1002_00143 0.52 -0.4 155,995 - MIT1002_00143 0.55 +0.6 156,009 + MIT1002_00143 0.56 -0.6 156,014 - MIT1002_00143 0.56 -0.6 156,072 - MIT1002_00143 0.60 -0.0 156,082 - MIT1002_00143 0.61 +0.5
Or see this region's nucleotide sequence