Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18745 and LRK53_RS18750 overlap by 20 nucleotides LRK53_RS18750 and LRK53_RS18755 are separated by 284 nucleotides LRK53_RS18755 and LRK53_RS18760 are separated by 59 nucleotides LRK53_RS18760 and LRK53_RS18765 are separated by 71 nucleotides
LRK53_RS18745: LRK53_RS18745 - hypothetical protein, at 141,207 to 141,458
_RS18745
LRK53_RS18750: LRK53_RS18750 - hypothetical protein, at 141,439 to 141,864
_RS18750
LRK53_RS18755: LRK53_RS18755 - hypothetical protein, at 142,149 to 142,334
_RS18755
LRK53_RS18760: LRK53_RS18760 - hypothetical protein, at 142,394 to 142,768
_RS18760
LRK53_RS18765: LRK53_RS18765 - RelA/SpoT domain-containing protein, at 142,840 to 143,862
_RS18765
Position (kb) 142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.289 kb on + strand, within LRK53_RS18745 at 141.289 kb on + strand, within LRK53_RS18745 at 141.289 kb on + strand, within LRK53_RS18745 at 141.289 kb on + strand, within LRK53_RS18745 at 141.289 kb on + strand, within LRK53_RS18745 at 141.290 kb on - strand, within LRK53_RS18745 at 141.290 kb on - strand, within LRK53_RS18745 at 141.290 kb on - strand, within LRK53_RS18745 at 141.290 kb on - strand, within LRK53_RS18745 at 141.290 kb on - strand, within LRK53_RS18745 at 141.427 kb on + strand, within LRK53_RS18745 at 141.427 kb on + strand, within LRK53_RS18745 at 141.427 kb on + strand, within LRK53_RS18745 at 141.428 kb on - strand, within LRK53_RS18745 at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.445 kb on + strand at 141.446 kb on - strand at 141.446 kb on - strand at 141.446 kb on - strand at 141.446 kb on - strand at 141.679 kb on + strand, within LRK53_RS18750 at 141.679 kb on + strand, within LRK53_RS18750 at 141.679 kb on + strand, within LRK53_RS18750 at 141.679 kb on + strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.680 kb on - strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.733 kb on + strand, within LRK53_RS18750 at 141.734 kb on - strand, within LRK53_RS18750 at 141.734 kb on - strand, within LRK53_RS18750 at 141.734 kb on - strand, within LRK53_RS18750 at 141.734 kb on - strand, within LRK53_RS18750 at 141.754 kb on + strand, within LRK53_RS18750 at 141.754 kb on + strand, within LRK53_RS18750 at 141.755 kb on - strand, within LRK53_RS18750 at 141.755 kb on - strand, within LRK53_RS18750 at 141.755 kb on - strand, within LRK53_RS18750 at 141.772 kb on + strand, within LRK53_RS18750 at 141.772 kb on + strand, within LRK53_RS18750 at 141.773 kb on - strand, within LRK53_RS18750 at 141.773 kb on - strand, within LRK53_RS18750 at 141.773 kb on - strand, within LRK53_RS18750 at 141.773 kb on - strand, within LRK53_RS18750 at 141.871 kb on - strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.896 kb on + strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.897 kb on - strand at 141.932 kb on - strand at 141.932 kb on - strand at 142.049 kb on + strand at 142.117 kb on + strand at 142.118 kb on - strand at 142.314 kb on + strand, within LRK53_RS18755 at 142.314 kb on + strand, within LRK53_RS18755 at 142.314 kb on + strand, within LRK53_RS18755 at 142.314 kb on + strand, within LRK53_RS18755 at 142.315 kb on - strand, within LRK53_RS18755 at 142.315 kb on - strand, within LRK53_RS18755 at 142.376 kb on - strand at 142.426 kb on - strand at 142.426 kb on - strand at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.488 kb on + strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.489 kb on - strand, within LRK53_RS18760 at 142.490 kb on + strand, within LRK53_RS18760 at 142.490 kb on + strand, within LRK53_RS18760 at 142.491 kb on - strand, within LRK53_RS18760 at 142.565 kb on - strand, within LRK53_RS18760 at 142.565 kb on - strand, within LRK53_RS18760 at 142.565 kb on - strand, within LRK53_RS18760 at 142.601 kb on + strand, within LRK53_RS18760 at 142.601 kb on + strand, within LRK53_RS18760 at 142.601 kb on + strand, within LRK53_RS18760 at 142.601 kb on + strand, within LRK53_RS18760 at 142.601 kb on + strand, within LRK53_RS18760 at 142.602 kb on - strand, within LRK53_RS18760 at 142.602 kb on - strand, within LRK53_RS18760 at 142.602 kb on - strand, within LRK53_RS18760 at 142.646 kb on + strand, within LRK53_RS18760 at 142.647 kb on - strand, within LRK53_RS18760 at 142.647 kb on - strand, within LRK53_RS18760 at 142.840 kb on - strand at 142.930 kb on + strand at 142.930 kb on + strand at 142.931 kb on - strand at 142.931 kb on - strand at 142.942 kb on + strand at 142.966 kb on + strand, within LRK53_RS18765 at 142.966 kb on + strand, within LRK53_RS18765 at 142.966 kb on + strand, within LRK53_RS18765 at 142.967 kb on - strand, within LRK53_RS18765 at 143.065 kb on + strand, within LRK53_RS18765 at 143.065 kb on + strand, within LRK53_RS18765 at 143.065 kb on + strand, within LRK53_RS18765 at 143.066 kb on - strand, within LRK53_RS18765 at 143.066 kb on - strand, within LRK53_RS18765 at 143.066 kb on - strand, within LRK53_RS18765 at 143.066 kb on - strand, within LRK53_RS18765 at 143.066 kb on - strand, within LRK53_RS18765 at 143.091 kb on + strand, within LRK53_RS18765 at 143.092 kb on - strand, within LRK53_RS18765 at 143.224 kb on + strand, within LRK53_RS18765 at 143.224 kb on + strand, within LRK53_RS18765 at 143.225 kb on - strand, within LRK53_RS18765 at 143.230 kb on + strand, within LRK53_RS18765 at 143.230 kb on + strand, within LRK53_RS18765 at 143.230 kb on + strand, within LRK53_RS18765 at 143.231 kb on - strand, within LRK53_RS18765 at 143.231 kb on - strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.278 kb on + strand, within LRK53_RS18765 at 143.279 kb on - strand, within LRK53_RS18765 at 143.279 kb on - strand, within LRK53_RS18765 at 143.279 kb on - strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.284 kb on + strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765 at 143.285 kb on - strand, within LRK53_RS18765
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 141,289 + LRK53_RS18745 0.33 -1.1 141,289 + LRK53_RS18745 0.33 -0.8 141,289 + LRK53_RS18745 0.33 -0.9 141,289 + LRK53_RS18745 0.33 -1.5 141,289 + LRK53_RS18745 0.33 -1.9 141,290 - LRK53_RS18745 0.33 +0.6 141,290 - LRK53_RS18745 0.33 -2.2 141,290 - LRK53_RS18745 0.33 -1.8 141,290 - LRK53_RS18745 0.33 -0.0 141,290 - LRK53_RS18745 0.33 -0.5 141,427 + LRK53_RS18745 0.87 -2.0 141,427 + LRK53_RS18745 0.87 -1.2 141,427 + LRK53_RS18745 0.87 -0.7 141,428 - LRK53_RS18745 0.88 -1.5 141,445 + -1.2 141,445 + +0.6 141,445 + -1.4 141,445 + -0.1 141,445 + -2.7 141,445 + -2.3 141,445 + -1.3 141,445 + +0.4 141,445 + +0.6 141,446 - +0.1 141,446 - -0.5 141,446 - -2.7 141,446 - +1.2 141,679 + LRK53_RS18750 0.56 -1.2 141,679 + LRK53_RS18750 0.56 -1.4 141,679 + LRK53_RS18750 0.56 -0.2 141,679 + LRK53_RS18750 0.56 +0.6 141,680 - LRK53_RS18750 0.57 +0.3 141,680 - LRK53_RS18750 0.57 -2.4 141,680 - LRK53_RS18750 0.57 -0.1 141,680 - LRK53_RS18750 0.57 -1.6 141,680 - LRK53_RS18750 0.57 +2.8 141,680 - LRK53_RS18750 0.57 -0.9 141,733 + LRK53_RS18750 0.69 -0.8 141,733 + LRK53_RS18750 0.69 -1.5 141,733 + LRK53_RS18750 0.69 -1.2 141,733 + LRK53_RS18750 0.69 -2.1 141,733 + LRK53_RS18750 0.69 +0.1 141,733 + LRK53_RS18750 0.69 -1.0 141,733 + LRK53_RS18750 0.69 +0.3 141,734 - LRK53_RS18750 0.69 -3.5 141,734 - LRK53_RS18750 0.69 -0.5 141,734 - LRK53_RS18750 0.69 -2.0 141,734 - LRK53_RS18750 0.69 -0.5 141,754 + LRK53_RS18750 0.74 -1.0 141,754 + LRK53_RS18750 0.74 -1.5 141,755 - LRK53_RS18750 0.74 +0.2 141,755 - LRK53_RS18750 0.74 -1.7 141,755 - LRK53_RS18750 0.74 -2.2 141,772 + LRK53_RS18750 0.78 -0.2 141,772 + LRK53_RS18750 0.78 +0.1 141,773 - LRK53_RS18750 0.78 -1.6 141,773 - LRK53_RS18750 0.78 -1.2 141,773 - LRK53_RS18750 0.78 -1.2 141,773 - LRK53_RS18750 0.78 -0.4 141,871 - -0.4 141,896 + +2.4 141,896 + -0.3 141,896 + +2.4 141,896 + -0.4 141,896 + -1.9 141,896 + -1.4 141,896 + -1.1 141,896 + +0.4 141,896 + -1.0 141,896 + -1.4 141,896 + -0.6 141,896 + -0.5 141,896 + +0.4 141,896 + -0.0 141,896 + +0.1 141,897 - +1.1 141,897 - -1.9 141,897 - -1.5 141,897 - -0.7 141,897 - -0.6 141,897 - -1.7 141,897 - -0.7 141,897 - -2.0 141,897 - -1.9 141,897 - +0.8 141,897 - -2.0 141,897 - -1.2 141,897 - -0.2 141,897 - -0.5 141,897 - +0.5 141,897 - -0.7 141,897 - +1.3 141,897 - -0.7 141,897 - -1.2 141,932 - -1.5 141,932 - -0.2 142,049 + -1.5 142,117 + -0.3 142,118 - -2.3 142,314 + LRK53_RS18755 0.89 -1.6 142,314 + LRK53_RS18755 0.89 +0.3 142,314 + LRK53_RS18755 0.89 +1.8 142,314 + LRK53_RS18755 0.89 -0.2 142,315 - LRK53_RS18755 0.89 -0.1 142,315 - LRK53_RS18755 0.89 +0.6 142,376 - -1.7 142,426 - +0.5 142,426 - -1.0 142,488 + LRK53_RS18760 0.25 -0.3 142,488 + LRK53_RS18760 0.25 -0.8 142,488 + LRK53_RS18760 0.25 -0.5 142,488 + LRK53_RS18760 0.25 +0.7 142,488 + LRK53_RS18760 0.25 -0.4 142,488 + LRK53_RS18760 0.25 +0.6 142,488 + LRK53_RS18760 0.25 -1.8 142,489 - LRK53_RS18760 0.25 -1.2 142,489 - LRK53_RS18760 0.25 +1.1 142,489 - LRK53_RS18760 0.25 -1.8 142,489 - LRK53_RS18760 0.25 +1.6 142,489 - LRK53_RS18760 0.25 -0.4 142,489 - LRK53_RS18760 0.25 -0.9 142,489 - LRK53_RS18760 0.25 -2.3 142,490 + LRK53_RS18760 0.26 -0.8 142,490 + LRK53_RS18760 0.26 -0.6 142,491 - LRK53_RS18760 0.26 -0.1 142,565 - LRK53_RS18760 0.46 +1.8 142,565 - LRK53_RS18760 0.46 +1.0 142,565 - LRK53_RS18760 0.46 -1.0 142,601 + LRK53_RS18760 0.55 -0.5 142,601 + LRK53_RS18760 0.55 -2.0 142,601 + LRK53_RS18760 0.55 -1.5 142,601 + LRK53_RS18760 0.55 -0.2 142,601 + LRK53_RS18760 0.55 -1.2 142,602 - LRK53_RS18760 0.55 -2.1 142,602 - LRK53_RS18760 0.55 -1.8 142,602 - LRK53_RS18760 0.55 -1.2 142,646 + LRK53_RS18760 0.67 -2.8 142,647 - LRK53_RS18760 0.67 +0.2 142,647 - LRK53_RS18760 0.67 -0.0 142,840 - +0.1 142,930 + -1.8 142,930 + -0.4 142,931 - -2.2 142,931 - +0.3 142,942 + -2.2 142,966 + LRK53_RS18765 0.12 +1.0 142,966 + LRK53_RS18765 0.12 +0.1 142,966 + LRK53_RS18765 0.12 -1.6 142,967 - LRK53_RS18765 0.12 -1.4 143,065 + LRK53_RS18765 0.22 +0.1 143,065 + LRK53_RS18765 0.22 -1.0 143,065 + LRK53_RS18765 0.22 -1.0 143,066 - LRK53_RS18765 0.22 -1.4 143,066 - LRK53_RS18765 0.22 -0.8 143,066 - LRK53_RS18765 0.22 -1.8 143,066 - LRK53_RS18765 0.22 -0.5 143,066 - LRK53_RS18765 0.22 -0.4 143,091 + LRK53_RS18765 0.25 -2.1 143,092 - LRK53_RS18765 0.25 -1.9 143,224 + LRK53_RS18765 0.38 -1.2 143,224 + LRK53_RS18765 0.38 -0.5 143,225 - LRK53_RS18765 0.38 -0.9 143,230 + LRK53_RS18765 0.38 -1.0 143,230 + LRK53_RS18765 0.38 -2.4 143,230 + LRK53_RS18765 0.38 -0.4 143,231 - LRK53_RS18765 0.38 -0.1 143,231 - LRK53_RS18765 0.38 -1.5 143,278 + LRK53_RS18765 0.43 -0.9 143,278 + LRK53_RS18765 0.43 -2.0 143,278 + LRK53_RS18765 0.43 -1.4 143,278 + LRK53_RS18765 0.43 -1.4 143,278 + LRK53_RS18765 0.43 -0.8 143,278 + LRK53_RS18765 0.43 +0.9 143,279 - LRK53_RS18765 0.43 -0.9 143,279 - LRK53_RS18765 0.43 -1.7 143,279 - LRK53_RS18765 0.43 -0.9 143,284 + LRK53_RS18765 0.43 +0.5 143,284 + LRK53_RS18765 0.43 -2.4 143,284 + LRK53_RS18765 0.43 -0.2 143,284 + LRK53_RS18765 0.43 -1.7 143,284 + LRK53_RS18765 0.43 +0.3 143,284 + LRK53_RS18765 0.43 -1.0 143,285 - LRK53_RS18765 0.43 -0.6 143,285 - LRK53_RS18765 0.43 -0.8 143,285 - LRK53_RS18765 0.43 -1.0 143,285 - LRK53_RS18765 0.43 -0.5 143,285 - LRK53_RS18765 0.43 -1.7 143,285 - LRK53_RS18765 0.43 -0.0
Or see this region's nucleotide sequence