Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18380

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18375 and LRK53_RS18380 are separated by 284 nucleotidesLRK53_RS18380 and LRK53_RS18385 are separated by 2 nucleotidesLRK53_RS18385 and LRK53_RS18390 are separated by 84 nucleotides LRK53_RS18375: LRK53_RS18375 - hypothetical protein, at 49,098 to 50,978 _RS18375 LRK53_RS18380: LRK53_RS18380 - toprim domain-containing protein, at 51,263 to 52,525 _RS18380 LRK53_RS18385: LRK53_RS18385 - hypothetical protein, at 52,528 to 52,815 _RS18385 LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448 _RS18390 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.280 kb on + strand, within LRK53_RS18375at 50.281 kb on - strand, within LRK53_RS18375at 50.332 kb on + strand, within LRK53_RS18375at 50.479 kb on + strand, within LRK53_RS18375at 50.479 kb on + strand, within LRK53_RS18375at 50.530 kb on + strand, within LRK53_RS18375at 50.962 kb on + strandat 50.963 kb on - strandat 50.963 kb on - strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.990 kb on + strandat 50.991 kb on - strandat 50.991 kb on - strandat 50.991 kb on - strandat 50.991 kb on - strandat 51.018 kb on - strandat 51.018 kb on - strandat 51.018 kb on - strandat 51.296 kb on + strandat 51.296 kb on + strandat 51.297 kb on - strandat 51.297 kb on - strandat 51.413 kb on - strand, within LRK53_RS18380at 51.413 kb on - strand, within LRK53_RS18380at 51.430 kb on + strand, within LRK53_RS18380at 51.431 kb on - strand, within LRK53_RS18380at 51.431 kb on - strand, within LRK53_RS18380at 51.893 kb on + strand, within LRK53_RS18380at 51.894 kb on - strand, within LRK53_RS18380at 51.902 kb on + strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.299 kb on - strand, within LRK53_RS18380at 52.459 kb on + strandat 52.459 kb on + strandat 52.460 kb on - strandat 52.460 kb on - strandat 52.460 kb on - strandat 52.523 kb on + strandat 52.523 kb on + strandat 52.523 kb on + strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.554 kb on + strandat 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.813 kb on + strandat 52.814 kb on - strandat 52.840 kb on - strandat 52.853 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 53.158 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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50,280 + LRK53_RS18375 0.63 -1.1
50,281 - LRK53_RS18375 0.63 -1.2
50,332 + LRK53_RS18375 0.66 -2.1
50,479 + LRK53_RS18375 0.73 +0.2
50,479 + LRK53_RS18375 0.73 +0.4
50,530 + LRK53_RS18375 0.76 -0.8
50,962 + +1.0
50,963 - -0.6
50,963 - -1.2
50,990 + -1.6
50,990 + -1.5
50,990 + -0.7
50,990 + -1.0
50,990 + -0.9
50,990 + +0.0
50,991 - -1.3
50,991 - -1.2
50,991 - -1.5
50,991 - -1.8
51,018 - -0.5
51,018 - -1.2
51,018 - +0.6
51,296 + -0.4
51,296 + -1.2
51,297 - -1.5
51,297 - -0.8
51,413 - LRK53_RS18380 0.12 +0.1
51,413 - LRK53_RS18380 0.12 -1.9
51,430 + LRK53_RS18380 0.13 +0.6
51,431 - LRK53_RS18380 0.13 +1.2
51,431 - LRK53_RS18380 0.13 +0.8
51,893 + LRK53_RS18380 0.50 -0.2
51,894 - LRK53_RS18380 0.50 -1.2
51,902 + LRK53_RS18380 0.51 -1.6
51,903 - LRK53_RS18380 0.51 -0.1
51,903 - LRK53_RS18380 0.51 +0.1
51,992 + LRK53_RS18380 0.58 -1.2
51,992 + LRK53_RS18380 0.58 -1.1
51,992 + LRK53_RS18380 0.58 +0.8
51,992 + LRK53_RS18380 0.58 +0.4
51,992 + LRK53_RS18380 0.58 -1.1
51,992 + LRK53_RS18380 0.58 -1.6
51,992 + LRK53_RS18380 0.58 -1.5
51,992 + LRK53_RS18380 0.58 -0.3
51,993 - LRK53_RS18380 0.58 -0.4
51,993 - LRK53_RS18380 0.58 -3.3
51,993 - LRK53_RS18380 0.58 -0.4
51,993 - LRK53_RS18380 0.58 -0.6
51,993 - LRK53_RS18380 0.58 -0.3
51,993 - LRK53_RS18380 0.58 -0.9
51,993 - LRK53_RS18380 0.58 +0.2
51,993 - LRK53_RS18380 0.58 +0.8
51,993 - LRK53_RS18380 0.58 +1.7
52,102 + LRK53_RS18380 0.66 -0.1
52,102 + LRK53_RS18380 0.66 +0.0
52,103 - LRK53_RS18380 0.67 -0.5
52,103 - LRK53_RS18380 0.67 -2.6
52,103 - LRK53_RS18380 0.67 -1.4
52,299 - LRK53_RS18380 0.82 -1.4
52,459 + -1.0
52,459 + -1.6
52,460 - -0.9
52,460 - -0.6
52,460 - -1.5
52,523 + -0.2
52,523 + -0.2
52,523 + -1.5
52,524 - +0.7
52,524 - -1.0
52,524 - -1.4
52,554 + +0.4
52,584 + LRK53_RS18385 0.19 +0.1
52,584 + LRK53_RS18385 0.19 +0.8
52,584 + LRK53_RS18385 0.19 -0.8
52,584 + LRK53_RS18385 0.19 -1.2
52,584 + LRK53_RS18385 0.19 -0.6
52,584 + LRK53_RS18385 0.19 -1.8
52,584 + LRK53_RS18385 0.19 -0.5
52,585 - LRK53_RS18385 0.20 -1.2
52,585 - LRK53_RS18385 0.20 -0.5
52,585 - LRK53_RS18385 0.20 -1.2
52,585 - LRK53_RS18385 0.20 -0.4
52,585 - LRK53_RS18385 0.20 -2.5
52,585 - LRK53_RS18385 0.20 -1.2
52,585 - LRK53_RS18385 0.20 +0.8
52,585 - LRK53_RS18385 0.20 +0.4
52,627 + LRK53_RS18385 0.34 -1.4
52,627 + LRK53_RS18385 0.34 -1.1
52,627 + LRK53_RS18385 0.34 -0.2
52,627 + LRK53_RS18385 0.34 -1.8
52,813 + -0.5
52,814 - -0.3
52,840 - -0.5
52,853 + -0.8
52,895 + -0.5
52,895 + -1.6
52,895 + -1.4
52,896 - -0.3
52,896 - +0.7
52,896 - -1.9
52,896 - -0.5
52,896 - -0.6
52,896 - -0.8
53,158 + LRK53_RS18390 0.47 -0.8
53,320 + LRK53_RS18390 0.77 -0.4
53,320 + LRK53_RS18390 0.77 -1.1
53,321 - LRK53_RS18390 0.77 -1.0

Or see this region's nucleotide sequence