Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08275

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08265 and LRK53_RS08270 are separated by 46 nucleotidesLRK53_RS08270 and LRK53_RS08275 overlap by 4 nucleotidesLRK53_RS08275 and LRK53_RS08280 are separated by 272 nucleotides LRK53_RS08265: LRK53_RS08265 - DUF3025 domain-containing protein, at 1,858,759 to 1,859,562 _RS08265 LRK53_RS08270: LRK53_RS08270 - transcription elongation factor GreB, at 1,859,609 to 1,860,115 _RS08270 LRK53_RS08275: LRK53_RS08275 - hypothetical protein, at 1,860,112 to 1,861,359 _RS08275 LRK53_RS08280: LRK53_RS08280 - DUF853 family protein, at 1,861,632 to 1,863,125 _RS08280 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.141 kb on - strand, within LRK53_RS08265at 1859.518 kb on + strandat 1859.519 kb on - strandat 1859.519 kb on - strandat 1859.519 kb on - strandat 1859.898 kb on + strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.947 kb on - strand, within LRK53_RS08270at 1859.947 kb on - strand, within LRK53_RS08270at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.261 kb on - strand, within LRK53_RS08275at 1860.263 kb on + strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.300 kb on - strand, within LRK53_RS08275at 1860.300 kb on - strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.764 kb on + strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.765 kb on - strand, within LRK53_RS08275at 1860.770 kb on + strand, within LRK53_RS08275at 1860.770 kb on + strand, within LRK53_RS08275at 1860.771 kb on - strand, within LRK53_RS08275at 1860.771 kb on - strand, within LRK53_RS08275at 1860.771 kb on - strand, within LRK53_RS08275at 1860.881 kb on + strand, within LRK53_RS08275at 1860.881 kb on + strand, within LRK53_RS08275at 1860.881 kb on + strand, within LRK53_RS08275at 1860.881 kb on + strand, within LRK53_RS08275at 1860.881 kb on + strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1860.882 kb on - strand, within LRK53_RS08275at 1861.238 kb on + strandat 1861.238 kb on + strandat 1861.238 kb on + strandat 1861.239 kb on - strandat 1861.239 kb on - strandat 1861.239 kb on - strandat 1861.239 kb on - strandat 1861.239 kb on - strandat 1861.411 kb on + strandat 1861.411 kb on + strandat 1861.411 kb on + strandat 1861.604 kb on + strandat 1861.604 kb on + strandat 1861.605 kb on - strandat 1861.903 kb on + strand, within LRK53_RS08280at 1861.903 kb on + strand, within LRK53_RS08280at 1861.903 kb on + strand, within LRK53_RS08280at 1861.903 kb on + strand, within LRK53_RS08280at 1861.903 kb on + strand, within LRK53_RS08280at 1861.904 kb on - strand, within LRK53_RS08280at 1861.904 kb on - strand, within LRK53_RS08280at 1861.904 kb on - strand, within LRK53_RS08280at 1861.904 kb on - strand, within LRK53_RS08280at 1861.904 kb on - strand, within LRK53_RS08280at 1862.014 kb on - strand, within LRK53_RS08280at 1862.014 kb on - strand, within LRK53_RS08280at 1862.034 kb on - strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.233 kb on + strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280at 1862.234 kb on - strand, within LRK53_RS08280

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,859,140 + LRK53_RS08265 0.47 +0.1
1,859,140 + LRK53_RS08265 0.47 +0.6
1,859,140 + LRK53_RS08265 0.47 -1.0
1,859,140 + LRK53_RS08265 0.47 +0.1
1,859,140 + LRK53_RS08265 0.47 -0.9
1,859,140 + LRK53_RS08265 0.47 +1.0
1,859,141 - LRK53_RS08265 0.48 +0.1
1,859,518 + -0.7
1,859,519 - -0.3
1,859,519 - -0.4
1,859,519 - -0.2
1,859,898 + LRK53_RS08270 0.57 -0.9
1,859,899 - LRK53_RS08270 0.57 +1.7
1,859,899 - LRK53_RS08270 0.57 -1.0
1,859,899 - LRK53_RS08270 0.57 +0.1
1,859,899 - LRK53_RS08270 0.57 -1.1
1,859,940 + LRK53_RS08270 0.65 -1.0
1,859,940 + LRK53_RS08270 0.65 -2.2
1,859,940 + LRK53_RS08270 0.65 -0.8
1,859,940 + LRK53_RS08270 0.65 +0.2
1,859,940 + LRK53_RS08270 0.65 -1.0
1,859,941 - LRK53_RS08270 0.65 -0.7
1,859,941 - LRK53_RS08270 0.65 +0.1
1,859,941 - LRK53_RS08270 0.65 -1.0
1,859,941 - LRK53_RS08270 0.65 -0.3
1,859,941 - LRK53_RS08270 0.65 -1.2
1,859,941 - LRK53_RS08270 0.65 -2.9
1,859,941 - LRK53_RS08270 0.65 -0.1
1,859,946 + LRK53_RS08270 0.66 -0.9
1,859,946 + LRK53_RS08270 0.66 -2.0
1,859,946 + LRK53_RS08270 0.66 -0.4
1,859,946 + LRK53_RS08270 0.66 -0.2
1,859,946 + LRK53_RS08270 0.66 -2.4
1,859,946 + LRK53_RS08270 0.66 -0.4
1,859,946 + LRK53_RS08270 0.66 +1.2
1,859,946 + LRK53_RS08270 0.66 -0.7
1,859,946 + LRK53_RS08270 0.66 -1.5
1,859,946 + LRK53_RS08270 0.66 -1.7
1,859,946 + LRK53_RS08270 0.66 -2.5
1,859,947 - LRK53_RS08270 0.67 -0.7
1,859,947 - LRK53_RS08270 0.67 -0.7
1,860,260 + LRK53_RS08275 0.12 +0.0
1,860,260 + LRK53_RS08275 0.12 -0.5
1,860,260 + LRK53_RS08275 0.12 -0.3
1,860,260 + LRK53_RS08275 0.12 -0.9
1,860,261 - LRK53_RS08275 0.12 +1.8
1,860,263 + LRK53_RS08275 0.12 -0.4
1,860,264 - LRK53_RS08275 0.12 -0.3
1,860,264 - LRK53_RS08275 0.12 +1.3
1,860,264 - LRK53_RS08275 0.12 -0.3
1,860,264 - LRK53_RS08275 0.12 +0.2
1,860,300 - LRK53_RS08275 0.15 -0.3
1,860,300 - LRK53_RS08275 0.15 -1.3
1,860,764 + LRK53_RS08275 0.52 -0.8
1,860,764 + LRK53_RS08275 0.52 -1.7
1,860,764 + LRK53_RS08275 0.52 -1.9
1,860,764 + LRK53_RS08275 0.52 -0.6
1,860,764 + LRK53_RS08275 0.52 -0.1
1,860,764 + LRK53_RS08275 0.52 -0.8
1,860,764 + LRK53_RS08275 0.52 -0.2
1,860,764 + LRK53_RS08275 0.52 +0.4
1,860,765 - LRK53_RS08275 0.52 +0.7
1,860,765 - LRK53_RS08275 0.52 -1.9
1,860,765 - LRK53_RS08275 0.52 -0.8
1,860,765 - LRK53_RS08275 0.52 +0.0
1,860,765 - LRK53_RS08275 0.52 -2.1
1,860,765 - LRK53_RS08275 0.52 -0.7
1,860,765 - LRK53_RS08275 0.52 +2.1
1,860,765 - LRK53_RS08275 0.52 -2.4
1,860,765 - LRK53_RS08275 0.52 +1.8
1,860,765 - LRK53_RS08275 0.52 -0.4
1,860,770 + LRK53_RS08275 0.53 -0.7
1,860,770 + LRK53_RS08275 0.53 -2.9
1,860,771 - LRK53_RS08275 0.53 +1.6
1,860,771 - LRK53_RS08275 0.53 -1.4
1,860,771 - LRK53_RS08275 0.53 -1.6
1,860,881 + LRK53_RS08275 0.62 +1.8
1,860,881 + LRK53_RS08275 0.62 +1.5
1,860,881 + LRK53_RS08275 0.62 +0.4
1,860,881 + LRK53_RS08275 0.62 +1.1
1,860,881 + LRK53_RS08275 0.62 -0.9
1,860,882 - LRK53_RS08275 0.62 -1.4
1,860,882 - LRK53_RS08275 0.62 -2.0
1,860,882 - LRK53_RS08275 0.62 -0.1
1,860,882 - LRK53_RS08275 0.62 -2.7
1,860,882 - LRK53_RS08275 0.62 -2.3
1,860,882 - LRK53_RS08275 0.62 -0.7
1,860,882 - LRK53_RS08275 0.62 -0.0
1,860,882 - LRK53_RS08275 0.62 -0.5
1,861,238 + -0.2
1,861,238 + -1.4
1,861,238 + -0.6
1,861,239 - +2.4
1,861,239 - -1.8
1,861,239 - -0.2
1,861,239 - -2.4
1,861,239 - -0.1
1,861,411 + -1.1
1,861,411 + -0.5
1,861,411 + -0.9
1,861,604 + +1.7
1,861,604 + -1.2
1,861,605 - -0.1
1,861,903 + LRK53_RS08280 0.18 -1.1
1,861,903 + LRK53_RS08280 0.18 +0.7
1,861,903 + LRK53_RS08280 0.18 -0.0
1,861,903 + LRK53_RS08280 0.18 -0.8
1,861,903 + LRK53_RS08280 0.18 -1.2
1,861,904 - LRK53_RS08280 0.18 +1.2
1,861,904 - LRK53_RS08280 0.18 -0.1
1,861,904 - LRK53_RS08280 0.18 -0.3
1,861,904 - LRK53_RS08280 0.18 -0.9
1,861,904 - LRK53_RS08280 0.18 -0.6
1,862,014 - LRK53_RS08280 0.26 -1.3
1,862,014 - LRK53_RS08280 0.26 -0.3
1,862,034 - LRK53_RS08280 0.27 -0.9
1,862,233 + LRK53_RS08280 0.40 +0.4
1,862,233 + LRK53_RS08280 0.40 -0.9
1,862,233 + LRK53_RS08280 0.40 +1.1
1,862,233 + LRK53_RS08280 0.40 -1.0
1,862,233 + LRK53_RS08280 0.40 -1.5
1,862,233 + LRK53_RS08280 0.40 -1.8
1,862,233 + LRK53_RS08280 0.40 -0.9
1,862,234 - LRK53_RS08280 0.40 -2.3
1,862,234 - LRK53_RS08280 0.40 +2.3
1,862,234 - LRK53_RS08280 0.40 -0.7
1,862,234 - LRK53_RS08280 0.40 -1.0
1,862,234 - LRK53_RS08280 0.40 +0.3
1,862,234 - LRK53_RS08280 0.40 -0.8
1,862,234 - LRK53_RS08280 0.40 -2.6

Or see this region's nucleotide sequence