Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01715 and LRK53_RS01720 overlap by 4 nucleotides LRK53_RS01720 and LRK53_RS01725 are separated by 264 nucleotides
LRK53_RS01715: LRK53_RS01715 - glycosyltransferase family 4 protein, at 402,914 to 403,990
_RS01715
LRK53_RS01720: LRK53_RS01720 - polysaccharide deacetylase family protein, at 403,987 to 404,688
_RS01720
LRK53_RS01725: LRK53_RS01725 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase, at 404,953 to 405,870
_RS01725
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.279 kb on + strand, within LRK53_RS01715 at 403.428 kb on + strand, within LRK53_RS01715 at 403.428 kb on + strand, within LRK53_RS01715 at 403.436 kb on + strand, within LRK53_RS01715 at 403.437 kb on - strand, within LRK53_RS01715 at 403.437 kb on - strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.720 kb on - strand, within LRK53_RS01715 at 403.720 kb on - strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.789 kb on - strand, within LRK53_RS01715 at 403.878 kb on + strand, within LRK53_RS01715 at 403.879 kb on - strand, within LRK53_RS01715 at 404.181 kb on - strand, within LRK53_RS01720 at 404.402 kb on + strand, within LRK53_RS01720 at 404.402 kb on + strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.646 kb on - strand at 404.646 kb on - strand at 404.646 kb on - strand at 404.646 kb on - strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 403,227 + LRK53_RS01715 0.29 -0.8 403,227 + LRK53_RS01715 0.29 -1.2 403,227 + LRK53_RS01715 0.29 -0.1 403,227 + LRK53_RS01715 0.29 -1.0 403,227 + LRK53_RS01715 0.29 -0.1 403,227 + LRK53_RS01715 0.29 +1.7 403,227 + LRK53_RS01715 0.29 -1.8 403,227 + LRK53_RS01715 0.29 -1.8 403,228 - LRK53_RS01715 0.29 -2.1 403,228 - LRK53_RS01715 0.29 -0.2 403,228 - LRK53_RS01715 0.29 -0.8 403,228 - LRK53_RS01715 0.29 -2.1 403,228 - LRK53_RS01715 0.29 -1.6 403,228 - LRK53_RS01715 0.29 -0.4 403,230 + LRK53_RS01715 0.29 -1.2 403,230 + LRK53_RS01715 0.29 -0.9 403,230 + LRK53_RS01715 0.29 +0.3 403,230 + LRK53_RS01715 0.29 +1.1 403,230 + LRK53_RS01715 0.29 -0.5 403,230 + LRK53_RS01715 0.29 -2.0 403,231 - LRK53_RS01715 0.29 -0.1 403,231 - LRK53_RS01715 0.29 +0.6 403,231 - LRK53_RS01715 0.29 -3.2 403,231 - LRK53_RS01715 0.29 -1.3 403,279 + LRK53_RS01715 0.34 -1.0 403,428 + LRK53_RS01715 0.48 -1.8 403,428 + LRK53_RS01715 0.48 -0.0 403,436 + LRK53_RS01715 0.48 +0.5 403,437 - LRK53_RS01715 0.49 -0.2 403,437 - LRK53_RS01715 0.49 -2.5 403,527 + LRK53_RS01715 0.57 +1.5 403,527 + LRK53_RS01715 0.57 -2.6 403,527 + LRK53_RS01715 0.57 -0.4 403,527 + LRK53_RS01715 0.57 +0.1 403,527 + LRK53_RS01715 0.57 -0.2 403,527 + LRK53_RS01715 0.57 -1.0 403,528 - LRK53_RS01715 0.57 -0.6 403,528 - LRK53_RS01715 0.57 -0.5 403,528 - LRK53_RS01715 0.57 -1.5 403,528 - LRK53_RS01715 0.57 -0.7 403,528 - LRK53_RS01715 0.57 -1.3 403,528 - LRK53_RS01715 0.57 -1.8 403,528 - LRK53_RS01715 0.57 +2.8 403,569 + LRK53_RS01715 0.61 -1.3 403,569 + LRK53_RS01715 0.61 -0.5 403,569 + LRK53_RS01715 0.61 +0.9 403,569 + LRK53_RS01715 0.61 -0.7 403,569 + LRK53_RS01715 0.61 +0.3 403,569 + LRK53_RS01715 0.61 -0.2 403,569 + LRK53_RS01715 0.61 +0.5 403,569 + LRK53_RS01715 0.61 -1.4 403,569 + LRK53_RS01715 0.61 -0.7 403,570 - LRK53_RS01715 0.61 -0.8 403,570 - LRK53_RS01715 0.61 -1.4 403,570 - LRK53_RS01715 0.61 -2.6 403,570 - LRK53_RS01715 0.61 -0.8 403,570 - LRK53_RS01715 0.61 -0.5 403,570 - LRK53_RS01715 0.61 +0.3 403,719 + LRK53_RS01715 0.75 -0.6 403,719 + LRK53_RS01715 0.75 +0.1 403,719 + LRK53_RS01715 0.75 -0.7 403,719 + LRK53_RS01715 0.75 +0.9 403,719 + LRK53_RS01715 0.75 -1.0 403,719 + LRK53_RS01715 0.75 -1.1 403,719 + LRK53_RS01715 0.75 +0.7 403,719 + LRK53_RS01715 0.75 -0.6 403,719 + LRK53_RS01715 0.75 -1.0 403,720 - LRK53_RS01715 0.75 -0.1 403,720 - LRK53_RS01715 0.75 +0.0 403,788 + LRK53_RS01715 0.81 -2.2 403,788 + LRK53_RS01715 0.81 -0.6 403,788 + LRK53_RS01715 0.81 -0.5 403,789 - LRK53_RS01715 0.81 -0.5 403,878 + LRK53_RS01715 0.90 +1.6 403,879 - LRK53_RS01715 0.90 -1.5 404,181 - LRK53_RS01720 0.28 -0.2 404,402 + LRK53_RS01720 0.59 -1.7 404,402 + LRK53_RS01720 0.59 -0.1 404,403 - LRK53_RS01720 0.59 +0.9 404,403 - LRK53_RS01720 0.59 -0.4 404,429 + LRK53_RS01720 0.63 -0.5 404,429 + LRK53_RS01720 0.63 -2.9 404,429 + LRK53_RS01720 0.63 -0.6 404,429 + LRK53_RS01720 0.63 -2.7 404,429 + LRK53_RS01720 0.63 +2.0 404,429 + LRK53_RS01720 0.63 +1.2 404,429 + LRK53_RS01720 0.63 -2.8 404,429 + LRK53_RS01720 0.63 +2.1 404,429 + LRK53_RS01720 0.63 -1.8 404,429 + LRK53_RS01720 0.63 -1.0 404,429 + LRK53_RS01720 0.63 -2.1 404,429 + LRK53_RS01720 0.63 -0.3 404,429 + LRK53_RS01720 0.63 +0.6 404,429 + LRK53_RS01720 0.63 -0.8 404,429 + LRK53_RS01720 0.63 -1.0 404,429 + LRK53_RS01720 0.63 -0.4 404,429 + LRK53_RS01720 0.63 -0.7 404,430 - LRK53_RS01720 0.63 +0.5 404,430 - LRK53_RS01720 0.63 -0.7 404,430 - LRK53_RS01720 0.63 +0.3 404,430 - LRK53_RS01720 0.63 -0.2 404,430 - LRK53_RS01720 0.63 -0.8 404,430 - LRK53_RS01720 0.63 -2.4 404,430 - LRK53_RS01720 0.63 -0.8 404,430 - LRK53_RS01720 0.63 -1.6 404,430 - LRK53_RS01720 0.63 -3.0 404,430 - LRK53_RS01720 0.63 -1.2 404,430 - LRK53_RS01720 0.63 +2.4 404,430 - LRK53_RS01720 0.63 -1.0 404,492 + LRK53_RS01720 0.72 -1.4 404,492 + LRK53_RS01720 0.72 -1.6 404,492 + LRK53_RS01720 0.72 +0.3 404,493 - LRK53_RS01720 0.72 -0.5 404,493 - LRK53_RS01720 0.72 -0.1 404,493 - LRK53_RS01720 0.72 -2.3 404,546 + LRK53_RS01720 0.80 -1.2 404,546 + LRK53_RS01720 0.80 -0.8 404,546 + LRK53_RS01720 0.80 +0.0 404,547 - LRK53_RS01720 0.80 -1.5 404,547 - LRK53_RS01720 0.80 -1.0 404,547 - LRK53_RS01720 0.80 -0.9 404,646 - -0.0 404,646 - -1.7 404,646 - -0.0 404,646 - -2.4 404,684 + -2.4 404,684 + -1.0 404,684 + -0.8 404,684 + +0.9 404,684 + -1.0 404,684 + +1.5 404,684 + -1.0 404,684 + +1.4 404,684 + -1.0 404,684 + -0.5 404,684 + -1.5 404,684 + +0.4 404,684 + -0.9 404,684 + -0.4 404,684 + -0.5 404,684 + -2.0 404,684 + -0.6 404,684 + -1.6 404,684 + -2.2 404,684 + -0.7 404,684 + -3.5 404,684 + -0.7 404,684 + -1.5 404,685 - -0.5 404,685 - -0.6 404,685 - -0.0 404,685 - -0.5 404,685 - +0.3 404,685 - -0.6 404,685 - -1.1 404,685 - -1.7 404,685 - -0.5 404,685 - -0.5 404,685 - +0.2 404,685 - -1.7 404,685 - -0.9 404,685 - -0.5 404,685 - -0.6 404,685 - -0.7 404,685 - -1.2 404,685 - -0.7 404,685 - -1.1 404,685 - -0.5 404,685 - -0.2 404,685 - -0.7 404,957 + -1.5 404,957 + -1.3 404,957 + -0.8 404,957 + -1.0 404,957 + -1.5 404,957 + -1.3 404,958 - +1.6 404,958 - +0.3 404,958 - +1.0 404,958 - -0.5 404,958 - -0.4 404,958 - -2.2
Or see this region's nucleotide sequence