Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00870 and LRK53_RS00875 are separated by 159 nucleotides LRK53_RS00875 and LRK53_RS00880 are separated by 50 nucleotides
LRK53_RS00870: LRK53_RS00870 - alpha-2-macroglobulin family protein, at 213,275 to 218,278
_RS00870
LRK53_RS00875: LRK53_RS00875 - penicillin-binding protein 1C, at 218,438 to 220,825
_RS00875
LRK53_RS00880: LRK53_RS00880 - TolC family protein, at 220,876 to 222,294
_RS00880
Position (kb) 218
219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.466 kb on + strand, within LRK53_RS00870 at 217.559 kb on + strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 218.150 kb on + strand at 218.150 kb on + strand at 218.150 kb on + strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.339 kb on + strand at 218.339 kb on + strand at 218.339 kb on + strand at 218.340 kb on - strand at 218.340 kb on - strand at 218.340 kb on - strand at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.700 kb on - strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.738 kb on + strand, within LRK53_RS00875 at 218.739 kb on - strand, within LRK53_RS00875 at 218.762 kb on + strand, within LRK53_RS00875 at 218.951 kb on + strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 219.011 kb on + strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.348 kb on - strand, within LRK53_RS00875 at 219.348 kb on - strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.422 kb on + strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.464 kb on + strand, within LRK53_RS00875 at 219.465 kb on - strand, within LRK53_RS00875 at 219.521 kb on + strand, within LRK53_RS00875 at 219.521 kb on + strand, within LRK53_RS00875 at 219.596 kb on + strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.830 kb on + strand, within LRK53_RS00875 at 219.831 kb on - strand, within LRK53_RS00875 at 220.034 kb on + strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.130 kb on + strand, within LRK53_RS00875 at 220.131 kb on - strand, within LRK53_RS00875 at 220.549 kb on - strand, within LRK53_RS00875 at 220.751 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.902 kb on + strand at 220.902 kb on + strand at 220.903 kb on - strand at 220.903 kb on - strand at 220.903 kb on - strand at 220.978 kb on + strand at 220.978 kb on + strand at 220.979 kb on - strand at 220.979 kb on - strand at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 217,445 + LRK53_RS00870 0.83 +0.4 217,445 + LRK53_RS00870 0.83 -0.8 217,445 + LRK53_RS00870 0.83 -1.0 217,445 + LRK53_RS00870 0.83 -1.5 217,445 + LRK53_RS00870 0.83 -0.3 217,445 + LRK53_RS00870 0.83 -1.5 217,445 + LRK53_RS00870 0.83 +2.0 217,445 + LRK53_RS00870 0.83 -2.2 217,446 - LRK53_RS00870 0.83 +1.6 217,446 - LRK53_RS00870 0.83 -1.1 217,446 - LRK53_RS00870 0.83 +0.3 217,446 - LRK53_RS00870 0.83 -1.9 217,446 - LRK53_RS00870 0.83 -0.7 217,446 - LRK53_RS00870 0.83 +0.4 217,446 - LRK53_RS00870 0.83 +2.9 217,466 + LRK53_RS00870 0.84 +0.0 217,559 + LRK53_RS00870 0.86 -1.8 217,560 - LRK53_RS00870 0.86 -1.7 217,560 - LRK53_RS00870 0.86 +0.7 217,560 - LRK53_RS00870 0.86 -0.2 217,560 - LRK53_RS00870 0.86 -1.6 217,560 - LRK53_RS00870 0.86 -0.1 217,560 - LRK53_RS00870 0.86 -1.4 218,150 + -1.6 218,150 + -1.4 218,150 + -0.1 218,151 - +0.1 218,151 - -0.6 218,151 - -0.4 218,151 - +0.2 218,180 + -1.1 218,180 + +1.7 218,180 + -2.7 218,180 + -1.5 218,180 + +0.9 218,180 + -0.1 218,180 + +1.3 218,180 + -1.1 218,181 - +0.7 218,181 - +0.4 218,181 - -1.2 218,181 - +0.2 218,181 - -1.4 218,181 - -1.6 218,181 - -0.9 218,181 - +1.2 218,181 - +1.1 218,181 - -0.8 218,213 + -1.9 218,213 + -1.9 218,213 + -0.9 218,213 + +0.6 218,213 + -0.1 218,213 + +0.0 218,213 + -0.7 218,214 - +0.4 218,214 - -0.6 218,214 - +0.1 218,214 - -1.0 218,214 - +0.1 218,214 - -1.7 218,214 - +1.7 218,214 - -1.6 218,214 - -0.9 218,339 + -0.3 218,339 + +0.3 218,339 + -1.4 218,340 - +1.7 218,340 - +0.4 218,340 - +0.8 218,699 + LRK53_RS00875 0.11 -1.6 218,699 + LRK53_RS00875 0.11 +1.1 218,699 + LRK53_RS00875 0.11 +1.5 218,699 + LRK53_RS00875 0.11 -1.0 218,699 + LRK53_RS00875 0.11 -1.4 218,700 - LRK53_RS00875 0.11 -1.6 218,720 + LRK53_RS00875 0.12 -0.7 218,720 + LRK53_RS00875 0.12 -0.6 218,720 + LRK53_RS00875 0.12 +0.1 218,721 - LRK53_RS00875 0.12 -2.1 218,721 - LRK53_RS00875 0.12 -1.2 218,721 - LRK53_RS00875 0.12 -0.1 218,721 - LRK53_RS00875 0.12 +1.3 218,738 + LRK53_RS00875 0.13 -0.7 218,739 - LRK53_RS00875 0.13 -1.0 218,762 + LRK53_RS00875 0.14 -1.7 218,951 + LRK53_RS00875 0.21 -0.7 218,952 - LRK53_RS00875 0.22 +0.3 218,952 - LRK53_RS00875 0.22 -0.1 218,952 - LRK53_RS00875 0.22 -0.7 218,952 - LRK53_RS00875 0.22 -0.4 219,011 + LRK53_RS00875 0.24 -2.4 219,012 - LRK53_RS00875 0.24 -2.2 219,012 - LRK53_RS00875 0.24 -0.9 219,012 - LRK53_RS00875 0.24 -0.8 219,347 + LRK53_RS00875 0.38 +0.4 219,347 + LRK53_RS00875 0.38 -2.8 219,347 + LRK53_RS00875 0.38 -0.4 219,347 + LRK53_RS00875 0.38 +0.3 219,347 + LRK53_RS00875 0.38 -1.9 219,347 + LRK53_RS00875 0.38 -0.6 219,347 + LRK53_RS00875 0.38 +1.6 219,347 + LRK53_RS00875 0.38 +0.1 219,348 - LRK53_RS00875 0.38 +0.2 219,348 - LRK53_RS00875 0.38 -0.9 219,370 + LRK53_RS00875 0.39 +0.8 219,370 + LRK53_RS00875 0.39 -0.8 219,370 + LRK53_RS00875 0.39 -1.5 219,370 + LRK53_RS00875 0.39 +0.5 219,371 - LRK53_RS00875 0.39 -1.0 219,371 - LRK53_RS00875 0.39 -0.7 219,371 - LRK53_RS00875 0.39 -1.0 219,422 + LRK53_RS00875 0.41 +0.1 219,423 - LRK53_RS00875 0.41 -0.0 219,423 - LRK53_RS00875 0.41 -0.4 219,423 - LRK53_RS00875 0.41 -1.1 219,440 + LRK53_RS00875 0.42 +0.1 219,440 + LRK53_RS00875 0.42 -0.3 219,440 + LRK53_RS00875 0.42 -1.0 219,464 + LRK53_RS00875 0.43 -1.3 219,465 - LRK53_RS00875 0.43 -0.1 219,521 + LRK53_RS00875 0.45 -0.1 219,521 + LRK53_RS00875 0.45 -0.9 219,596 + LRK53_RS00875 0.48 -0.3 219,597 - LRK53_RS00875 0.49 -0.3 219,597 - LRK53_RS00875 0.49 +1.9 219,597 - LRK53_RS00875 0.49 -1.6 219,830 + LRK53_RS00875 0.58 -1.7 219,831 - LRK53_RS00875 0.58 -0.2 220,034 + LRK53_RS00875 0.67 -1.3 220,035 - LRK53_RS00875 0.67 -1.1 220,035 - LRK53_RS00875 0.67 -0.8 220,035 - LRK53_RS00875 0.67 -1.7 220,130 + LRK53_RS00875 0.71 +0.0 220,131 - LRK53_RS00875 0.71 +1.2 220,549 - LRK53_RS00875 0.88 -0.7 220,751 + -0.6 220,850 + +1.7 220,850 + -0.8 220,850 + -0.2 220,850 + +0.1 220,850 + -0.0 220,850 + -1.3 220,850 + -0.1 220,850 + -0.7 220,850 + -0.3 220,850 + -1.6 220,850 + -1.0 220,850 + +0.3 220,851 - -1.2 220,851 - +1.3 220,851 - +0.8 220,851 - -0.1 220,851 - -0.6 220,851 - -0.3 220,851 - -0.3 220,851 - +1.5 220,851 - +0.6 220,851 - -1.0 220,851 - -1.6 220,851 - -0.3 220,851 - +0.3 220,851 - +0.4 220,851 - -0.3 220,902 + -0.1 220,902 + +1.3 220,903 - -0.9 220,903 - -0.4 220,903 - -0.3 220,978 + -1.4 220,978 + -2.4 220,979 - -0.6 220,979 - +0.1 221,494 + LRK53_RS00880 0.44 -0.1 221,494 + LRK53_RS00880 0.44 -0.1 221,494 + LRK53_RS00880 0.44 -2.9 221,494 + LRK53_RS00880 0.44 -0.1 221,494 + LRK53_RS00880 0.44 +0.6 221,494 + LRK53_RS00880 0.44 -1.8 221,495 - LRK53_RS00880 0.44 -0.8 221,495 - LRK53_RS00880 0.44 +1.5 221,495 - LRK53_RS00880 0.44 -0.7 221,495 - LRK53_RS00880 0.44 +0.2 221,495 - LRK53_RS00880 0.44 -2.4 221,495 - LRK53_RS00880 0.44 -1.1 221,495 - LRK53_RS00880 0.44 +0.1 221,495 - LRK53_RS00880 0.44 -1.7 221,497 - LRK53_RS00880 0.44 -1.8 221,497 - LRK53_RS00880 0.44 -0.4 221,497 - LRK53_RS00880 0.44 -0.1 221,530 + LRK53_RS00880 0.46 +0.3 221,530 + LRK53_RS00880 0.46 +1.3 221,530 + LRK53_RS00880 0.46 -0.7 221,530 + LRK53_RS00880 0.46 +0.0 221,531 - LRK53_RS00880 0.46 -0.8 221,531 - LRK53_RS00880 0.46 +0.3 221,531 - LRK53_RS00880 0.46 +0.6 221,531 - LRK53_RS00880 0.46 +1.7 221,531 - LRK53_RS00880 0.46 +1.0 221,531 - LRK53_RS00880 0.46 -0.7
Or see this region's nucleotide sequence