Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04229

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04227 and MIT1002_04228 are separated by 83 nucleotidesMIT1002_04228 and MIT1002_04229 are separated by 60 nucleotidesMIT1002_04229 and MIT1002_04230 are separated by 244 nucleotidesMIT1002_04230 and MIT1002_04231 are separated by 264 nucleotides MIT1002_04227: MIT1002_04227 - hypothetical protein, at 95,405 to 96,172 _04227 MIT1002_04228: MIT1002_04228 - Excalibur calcium-binding domain protein, at 96,256 to 96,987 _04228 MIT1002_04229: MIT1002_04229 - N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated, at 97,048 to 97,704 _04229 MIT1002_04230: MIT1002_04230 - hypothetical protein, at 97,949 to 98,215 _04230 MIT1002_04231: MIT1002_04231 - hypothetical protein, at 98,480 to 98,878 _04231 Position (kb) 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 96.048 kb on - strand, within MIT1002_04227at 96.055 kb on + strand, within MIT1002_04227at 96.061 kb on - strand, within MIT1002_04227at 96.114 kb on - strandat 96.151 kb on - strandat 96.229 kb on - strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.327 kb on + strandat 96.340 kb on + strand, within MIT1002_04228at 96.356 kb on + strand, within MIT1002_04228at 96.390 kb on + strand, within MIT1002_04228at 96.398 kb on - strand, within MIT1002_04228at 96.399 kb on + strand, within MIT1002_04228at 96.437 kb on + strand, within MIT1002_04228at 96.437 kb on + strand, within MIT1002_04228at 96.437 kb on + strand, within MIT1002_04228at 96.437 kb on + strand, within MIT1002_04228at 96.437 kb on + strand, within MIT1002_04228at 96.445 kb on - strand, within MIT1002_04228at 96.445 kb on - strand, within MIT1002_04228at 96.445 kb on - strand, within MIT1002_04228at 96.445 kb on - strand, within MIT1002_04228at 96.445 kb on - strand, within MIT1002_04228at 96.447 kb on - strand, within MIT1002_04228at 96.447 kb on - strand, within MIT1002_04228at 96.473 kb on - strand, within MIT1002_04228at 96.478 kb on + strand, within MIT1002_04228at 96.479 kb on + strand, within MIT1002_04228at 96.479 kb on + strand, within MIT1002_04228at 96.497 kb on - strand, within MIT1002_04228at 96.497 kb on - strand, within MIT1002_04228at 96.554 kb on - strand, within MIT1002_04228at 96.558 kb on + strand, within MIT1002_04228at 96.566 kb on - strand, within MIT1002_04228at 96.620 kb on - strand, within MIT1002_04228at 96.623 kb on + strand, within MIT1002_04228at 96.623 kb on + strand, within MIT1002_04228at 96.623 kb on + strand, within MIT1002_04228at 96.631 kb on - strand, within MIT1002_04228at 96.648 kb on + strand, within MIT1002_04228at 96.660 kb on + strand, within MIT1002_04228at 96.660 kb on + strand, within MIT1002_04228at 96.701 kb on - strand, within MIT1002_04228at 96.701 kb on - strand, within MIT1002_04228at 96.712 kb on - strand, within MIT1002_04228at 96.712 kb on - strand, within MIT1002_04228at 96.719 kb on + strand, within MIT1002_04228at 96.722 kb on - strand, within MIT1002_04228at 96.722 kb on - strand, within MIT1002_04228at 96.728 kb on - strand, within MIT1002_04228at 96.773 kb on + strand, within MIT1002_04228at 96.781 kb on - strand, within MIT1002_04228at 96.781 kb on - strand, within MIT1002_04228at 96.783 kb on + strand, within MIT1002_04228at 96.807 kb on - strand, within MIT1002_04228at 96.816 kb on + strand, within MIT1002_04228at 96.855 kb on - strand, within MIT1002_04228at 96.857 kb on + strand, within MIT1002_04228at 96.859 kb on - strand, within MIT1002_04228at 96.882 kb on - strand, within MIT1002_04228at 96.892 kb on + strand, within MIT1002_04228at 96.906 kb on + strand, within MIT1002_04228at 96.907 kb on + strand, within MIT1002_04228at 96.907 kb on + strand, within MIT1002_04228at 96.912 kb on + strand, within MIT1002_04228at 96.915 kb on - strandat 96.917 kb on + strandat 96.922 kb on + strandat 96.930 kb on - strandat 96.930 kb on - strandat 96.989 kb on + strandat 96.989 kb on + strandat 96.989 kb on + strandat 96.994 kb on + strandat 96.997 kb on - strandat 96.997 kb on - strandat 96.997 kb on - strandat 97.003 kb on + strandat 97.028 kb on - strandat 97.028 kb on - strandat 97.048 kb on - strandat 97.114 kb on + strand, within MIT1002_04229at 97.134 kb on + strand, within MIT1002_04229at 97.146 kb on + strand, within MIT1002_04229at 97.165 kb on - strand, within MIT1002_04229at 97.167 kb on - strand, within MIT1002_04229at 97.169 kb on + strand, within MIT1002_04229at 97.186 kb on - strand, within MIT1002_04229at 97.237 kb on - strand, within MIT1002_04229at 97.263 kb on + strand, within MIT1002_04229at 97.273 kb on + strand, within MIT1002_04229at 97.281 kb on + strand, within MIT1002_04229at 97.289 kb on - strand, within MIT1002_04229at 97.311 kb on + strand, within MIT1002_04229at 97.324 kb on + strand, within MIT1002_04229at 97.331 kb on - strand, within MIT1002_04229at 97.336 kb on - strand, within MIT1002_04229at 97.390 kb on - strand, within MIT1002_04229at 97.411 kb on + strand, within MIT1002_04229at 97.412 kb on + strand, within MIT1002_04229at 97.413 kb on + strand, within MIT1002_04229at 97.413 kb on + strand, within MIT1002_04229at 97.413 kb on + strand, within MIT1002_04229at 97.414 kb on - strand, within MIT1002_04229at 97.414 kb on - strand, within MIT1002_04229at 97.420 kb on - strand, within MIT1002_04229at 97.421 kb on - strand, within MIT1002_04229at 97.427 kb on + strand, within MIT1002_04229at 97.427 kb on + strand, within MIT1002_04229at 97.427 kb on + strand, within MIT1002_04229at 97.427 kb on + strand, within MIT1002_04229at 97.427 kb on + strand, within MIT1002_04229at 97.432 kb on - strand, within MIT1002_04229at 97.435 kb on - strand, within MIT1002_04229at 97.435 kb on - strand, within MIT1002_04229at 97.494 kb on + strand, within MIT1002_04229at 97.499 kb on + strand, within MIT1002_04229at 97.502 kb on - strand, within MIT1002_04229at 97.504 kb on - strand, within MIT1002_04229at 97.540 kb on + strand, within MIT1002_04229at 97.554 kb on - strand, within MIT1002_04229at 97.561 kb on + strand, within MIT1002_04229at 97.603 kb on + strand, within MIT1002_04229at 97.603 kb on + strand, within MIT1002_04229at 97.637 kb on + strand, within MIT1002_04229at 97.744 kb on - strandat 97.757 kb on + strandat 97.760 kb on - strandat 97.771 kb on + strandat 97.776 kb on + strandat 97.784 kb on - strandat 97.796 kb on - strandat 97.838 kb on - strandat 97.842 kb on + strandat 97.860 kb on - strandat 97.860 kb on - strandat 97.862 kb on + strandat 97.865 kb on - strandat 97.866 kb on - strandat 97.892 kb on + strandat 97.906 kb on + strandat 97.912 kb on + strandat 97.920 kb on - strandat 97.932 kb on - strandat 97.941 kb on - strandat 98.055 kb on - strand, within MIT1002_04230at 98.059 kb on + strand, within MIT1002_04230at 98.059 kb on + strand, within MIT1002_04230at 98.105 kb on - strand, within MIT1002_04230at 98.115 kb on - strand, within MIT1002_04230at 98.172 kb on + strand, within MIT1002_04230at 98.172 kb on + strand, within MIT1002_04230at 98.180 kb on - strand, within MIT1002_04230at 98.205 kb on + strandat 98.240 kb on - strandat 98.267 kb on + strandat 98.274 kb on + strandat 98.309 kb on + strandat 98.328 kb on + strandat 98.328 kb on + strandat 98.336 kb on - strandat 98.336 kb on - strandat 98.338 kb on + strandat 98.338 kb on - strandat 98.339 kb on - strandat 98.341 kb on + strandat 98.348 kb on - strandat 98.471 kb on - strandat 98.564 kb on + strand, within MIT1002_04231at 98.564 kb on - strand, within MIT1002_04231at 98.566 kb on - strand, within MIT1002_04231at 98.583 kb on + strand, within MIT1002_04231at 98.592 kb on - strand, within MIT1002_04231at 98.592 kb on - strand, within MIT1002_04231at 98.669 kb on - strand, within MIT1002_04231at 98.670 kb on - strand, within MIT1002_04231at 98.675 kb on - strand, within MIT1002_04231

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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96,048 - MIT1002_04227 0.84 +1.0
96,055 + MIT1002_04227 0.85 +0.4
96,061 - MIT1002_04227 0.85 -1.1
96,114 - -0.7
96,151 - -0.9
96,229 - -0.9
96,327 + +1.1
96,327 + +0.6
96,327 + +0.2
96,340 + MIT1002_04228 0.11 -1.5
96,356 + MIT1002_04228 0.14 -1.8
96,390 + MIT1002_04228 0.18 -1.7
96,398 - MIT1002_04228 0.19 +1.5
96,399 + MIT1002_04228 0.20 -0.1
96,437 + MIT1002_04228 0.25 +0.2
96,437 + MIT1002_04228 0.25 +2.0
96,437 + MIT1002_04228 0.25 -3.1
96,437 + MIT1002_04228 0.25 +0.1
96,437 + MIT1002_04228 0.25 -0.5
96,445 - MIT1002_04228 0.26 +0.5
96,445 - MIT1002_04228 0.26 +0.1
96,445 - MIT1002_04228 0.26 +0.6
96,445 - MIT1002_04228 0.26 -2.8
96,445 - MIT1002_04228 0.26 -0.3
96,447 - MIT1002_04228 0.26 +1.4
96,447 - MIT1002_04228 0.26 +0.3
96,473 - MIT1002_04228 0.30 -0.2
96,478 + MIT1002_04228 0.30 +0.1
96,479 + MIT1002_04228 0.30 -1.8
96,479 + MIT1002_04228 0.30 -0.3
96,497 - MIT1002_04228 0.33 +1.9
96,497 - MIT1002_04228 0.33 +0.4
96,554 - MIT1002_04228 0.41 +1.1
96,558 + MIT1002_04228 0.41 -0.2
96,566 - MIT1002_04228 0.42 +0.2
96,620 - MIT1002_04228 0.50 +0.8
96,623 + MIT1002_04228 0.50 +0.3
96,623 + MIT1002_04228 0.50 +1.3
96,623 + MIT1002_04228 0.50 +0.4
96,631 - MIT1002_04228 0.51 +0.9
96,648 + MIT1002_04228 0.54 -0.1
96,660 + MIT1002_04228 0.55 +0.5
96,660 + MIT1002_04228 0.55 -2.1
96,701 - MIT1002_04228 0.61 +0.0
96,701 - MIT1002_04228 0.61 -0.6
96,712 - MIT1002_04228 0.62 -0.5
96,712 - MIT1002_04228 0.62 +0.2
96,719 + MIT1002_04228 0.63 +1.2
96,722 - MIT1002_04228 0.64 +0.5
96,722 - MIT1002_04228 0.64 -0.3
96,728 - MIT1002_04228 0.64 +0.2
96,773 + MIT1002_04228 0.71 -0.4
96,781 - MIT1002_04228 0.72 -1.1
96,781 - MIT1002_04228 0.72 -0.5
96,783 + MIT1002_04228 0.72 -0.6
96,807 - MIT1002_04228 0.75 +0.7
96,816 + MIT1002_04228 0.77 +1.4
96,855 - MIT1002_04228 0.82 -1.5
96,857 + MIT1002_04228 0.82 +0.5
96,859 - MIT1002_04228 0.82 +0.4
96,882 - MIT1002_04228 0.86 +0.5
96,892 + MIT1002_04228 0.87 +0.1
96,906 + MIT1002_04228 0.89 +0.1
96,907 + MIT1002_04228 0.89 -0.2
96,907 + MIT1002_04228 0.89 -0.7
96,912 + MIT1002_04228 0.90 -0.0
96,915 - +0.1
96,917 + +0.5
96,922 + -0.5
96,930 - -0.3
96,930 - +0.0
96,989 + +0.3
96,989 + -3.4
96,989 + +0.1
96,994 + +0.3
96,997 - -0.9
96,997 - +0.8
96,997 - +2.2
97,003 + +0.7
97,028 - +0.3
97,028 - -0.4
97,048 - +1.4
97,114 + MIT1002_04229 0.10 +0.1
97,134 + MIT1002_04229 0.13 +0.3
97,146 + MIT1002_04229 0.15 +0.8
97,165 - MIT1002_04229 0.18 -0.0
97,167 - MIT1002_04229 0.18 -2.7
97,169 + MIT1002_04229 0.18 +2.5
97,186 - MIT1002_04229 0.21 -0.6
97,237 - MIT1002_04229 0.29 -0.4
97,263 + MIT1002_04229 0.33 +0.1
97,273 + MIT1002_04229 0.34 -0.1
97,281 + MIT1002_04229 0.35 -0.7
97,289 - MIT1002_04229 0.37 +1.1
97,311 + MIT1002_04229 0.40 -2.7
97,324 + MIT1002_04229 0.42 +1.1
97,331 - MIT1002_04229 0.43 +0.2
97,336 - MIT1002_04229 0.44 +0.1
97,390 - MIT1002_04229 0.52 +0.3
97,411 + MIT1002_04229 0.55 +0.2
97,412 + MIT1002_04229 0.55 -1.3
97,413 + MIT1002_04229 0.56 -1.6
97,413 + MIT1002_04229 0.56 -0.9
97,413 + MIT1002_04229 0.56 +2.0
97,414 - MIT1002_04229 0.56 +0.3
97,414 - MIT1002_04229 0.56 +0.8
97,420 - MIT1002_04229 0.57 +1.2
97,421 - MIT1002_04229 0.57 +0.7
97,427 + MIT1002_04229 0.58 -1.7
97,427 + MIT1002_04229 0.58 +0.8
97,427 + MIT1002_04229 0.58 -1.1
97,427 + MIT1002_04229 0.58 +1.1
97,427 + MIT1002_04229 0.58 +0.8
97,432 - MIT1002_04229 0.58 -1.5
97,435 - MIT1002_04229 0.59 +0.6
97,435 - MIT1002_04229 0.59 +0.1
97,494 + MIT1002_04229 0.68 -0.1
97,499 + MIT1002_04229 0.69 -0.1
97,502 - MIT1002_04229 0.69 -0.8
97,504 - MIT1002_04229 0.69 +0.2
97,540 + MIT1002_04229 0.75 -1.9
97,554 - MIT1002_04229 0.77 +0.3
97,561 + MIT1002_04229 0.78 +1.1
97,603 + MIT1002_04229 0.84 +0.2
97,603 + MIT1002_04229 0.84 +0.1
97,637 + MIT1002_04229 0.90 -1.4
97,744 - +0.8
97,757 + +0.9
97,760 - +0.3
97,771 + -0.7
97,776 + -0.7
97,784 - -1.6
97,796 - +0.4
97,838 - -0.1
97,842 + +1.1
97,860 - +0.6
97,860 - +0.3
97,862 + -0.7
97,865 - -0.6
97,866 - +0.2
97,892 + -0.2
97,906 + +1.2
97,912 + -1.2
97,920 - +0.9
97,932 - -0.5
97,941 - +0.3
98,055 - MIT1002_04230 0.40 -1.6
98,059 + MIT1002_04230 0.41 +0.5
98,059 + MIT1002_04230 0.41 +1.4
98,105 - MIT1002_04230 0.58 -0.3
98,115 - MIT1002_04230 0.62 -0.4
98,172 + MIT1002_04230 0.84 +0.4
98,172 + MIT1002_04230 0.84 -2.1
98,180 - MIT1002_04230 0.87 -0.8
98,205 + +0.1
98,240 - +0.2
98,267 + +0.5
98,274 + -0.0
98,309 + -2.5
98,328 + +1.5
98,328 + +1.0
98,336 - -0.7
98,336 - +0.6
98,338 + +0.8
98,338 - +0.4
98,339 - +0.3
98,341 + -0.2
98,348 - -0.5
98,471 - -0.4
98,564 + MIT1002_04231 0.21 +2.0
98,564 - MIT1002_04231 0.21 +1.3
98,566 - MIT1002_04231 0.22 +0.8
98,583 + MIT1002_04231 0.26 -0.6
98,592 - MIT1002_04231 0.28 +0.1
98,592 - MIT1002_04231 0.28 +0.7
98,669 - MIT1002_04231 0.47 -0.4
98,670 - MIT1002_04231 0.48 +0.6
98,675 - MIT1002_04231 0.49 -0.1

Or see this region's nucleotide sequence