Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04058

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
4,558,917	+		MIT1002_04057	0.61	-0.0
4,558,917	-		MIT1002_04057	0.61	+0.9
4,558,991	+		MIT1002_04057	0.64	+0.5
4,558,994	-		MIT1002_04057	0.64	-0.3
4,558,998	+		MIT1002_04057	0.64	+0.1
4,559,012	+		MIT1002_04057	0.65	-0.4
4,559,012	-		MIT1002_04057	0.65	+1.4
4,559,057	+		MIT1002_04057	0.67	+0.8
4,559,104	+		MIT1002_04057	0.69	-0.2
4,559,112	-		MIT1002_04057	0.69	+0.2
4,559,121	+		MIT1002_04057	0.69	-1.3
4,559,121	-		MIT1002_04057	0.69	+0.2
4,559,129	-		MIT1002_04057	0.70	-0.2
4,559,179	-		MIT1002_04057	0.72	+0.3
4,559,179	-		MIT1002_04057	0.72	+0.1
4,559,197	+		MIT1002_04057	0.72	+0.2
4,559,200	-		MIT1002_04057	0.72	+0.9
4,559,233	-		MIT1002_04057	0.74	-0.6
4,559,233	-		MIT1002_04057	0.74	+0.9
4,559,249	+		MIT1002_04057	0.74	+0.4
4,559,364	-		MIT1002_04057	0.79	-2.8
4,559,364	-		MIT1002_04057	0.79	+0.9
4,559,389	+		MIT1002_04057	0.80	-1.1
4,559,460	+		MIT1002_04057	0.83	+0.8
4,559,468	-		MIT1002_04057	0.83	-0.9
4,559,605	+		MIT1002_04057	0.89	-0.1
4,559,636	-				+0.3
4,559,660	-				+1.0
4,559,660	-				+1.0
4,559,660	-				+0.0
4,559,686	-				-2.2
4,559,691	-				-1.0
4,559,707	-				+0.6
4,559,792	-				+0.1
4,559,799	+				-0.8
4,559,908	+				+0.3
4,559,916	-				-0.1
4,559,916	-				+0.0
4,559,935	-		MIT1002_04058	0.11	+0.8
4,559,955	+		MIT1002_04058	0.15	+1.6
4,559,965	+		MIT1002_04058	0.17	-0.6
4,559,965	+		MIT1002_04058	0.17	-2.8
4,559,978	-		MIT1002_04058	0.19	-1.3
4,559,980	+		MIT1002_04058	0.19	-0.1
4,559,983	-		MIT1002_04058	0.20	-0.2
4,560,019	+		MIT1002_04058	0.26	-0.8
4,560,024	+		MIT1002_04058	0.27	-0.0
4,560,027	-		MIT1002_04058	0.27	-0.8
4,560,049	+		MIT1002_04058	0.31	+0.5
4,560,065	-		MIT1002_04058	0.34	+0.8
4,560,082	+		MIT1002_04058	0.37	-1.5
4,560,171	+		MIT1002_04058	0.52	-2.1
4,560,179	-		MIT1002_04058	0.53	+0.6
4,560,207	+		MIT1002_04058	0.58	+2.2
4,560,207	+		MIT1002_04058	0.58	+0.1
4,560,216	-		MIT1002_04058	0.59	+0.4
4,560,271	+		MIT1002_04058	0.69	+1.4
4,560,316	-		MIT1002_04058	0.77	-0.2
4,560,374	+		MIT1002_04058	0.86	-0.9
4,560,381	+		MIT1002_04058	0.88	-0.2
4,560,389	-		MIT1002_04058	0.89	-0.9
4,560,400	+				+0.8
4,560,455	-				+1.0
4,560,583	-				-0.0
4,560,621	-				-1.9
4,560,653	-				-0.6
4,560,659	-				-1.4
4,560,681	+				+0.3
4,560,735	+				-0.5
4,560,816	+		MIT1002_04059	0.20	-0.8
4,560,816	+		MIT1002_04059	0.20	-0.1
4,560,826	+		MIT1002_04059	0.23	-1.6
4,560,846	-		MIT1002_04059	0.28	-0.1
4,560,960	-		MIT1002_04059	0.55	-0.2
4,560,999	-		MIT1002_04059	0.64	-0.3
4,561,029	+		MIT1002_04059	0.71	-0.9
4,561,065	-		MIT1002_04059	0.80	-1.2
4,561,070	-		MIT1002_04059	0.81	+2.1
4,561,090	+		MIT1002_04059	0.86	-0.4
4,561,165	-				+1.5
4,561,215	+				+1.0
4,561,302	-				+1.3
4,561,361	+				-0.2
4,561,361	-				-0.7