Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03820 and MIT1002_03821 overlap by 1 nucleotides MIT1002_03821 and MIT1002_03822 are separated by 129 nucleotides
MIT1002_03820: MIT1002_03820 - putative ABC transporter ATP-binding protein/MT1014, at 4,267,590 to 4,268,393
_03820
MIT1002_03821: MIT1002_03821 - acidobacterial duplicated orphan permease, at 4,268,393 to 4,269,718
_03821
MIT1002_03822: MIT1002_03822 - Aerotaxis receptor, at 4,269,848 to 4,271,419
_03822
Position (kb) 4268
4269
4270 Strain fitness (log2 ratio) -2
-1
0
1 at 4267.433 kb on + strand at 4267.438 kb on + strand at 4267.441 kb on - strand at 4267.538 kb on - strand at 4267.560 kb on - strand at 4267.582 kb on + strand at 4267.590 kb on - strand at 4267.590 kb on - strand at 4267.590 kb on - strand at 4267.638 kb on + strand at 4267.657 kb on - strand at 4267.678 kb on - strand, within MIT1002_03820 at 4267.848 kb on - strand, within MIT1002_03820 at 4267.874 kb on + strand, within MIT1002_03820 at 4267.909 kb on + strand, within MIT1002_03820 at 4267.917 kb on - strand, within MIT1002_03820 at 4267.917 kb on - strand, within MIT1002_03820 at 4267.918 kb on - strand, within MIT1002_03820 at 4267.918 kb on - strand, within MIT1002_03820 at 4268.037 kb on - strand, within MIT1002_03820 at 4268.070 kb on - strand, within MIT1002_03820 at 4268.102 kb on + strand, within MIT1002_03820 at 4268.141 kb on - strand, within MIT1002_03820 at 4268.193 kb on + strand, within MIT1002_03820 at 4268.201 kb on - strand, within MIT1002_03820 at 4268.247 kb on + strand, within MIT1002_03820 at 4268.276 kb on + strand, within MIT1002_03820 at 4268.283 kb on + strand, within MIT1002_03820 at 4268.376 kb on + strand at 4268.382 kb on - strand at 4268.382 kb on - strand at 4268.388 kb on + strand at 4268.453 kb on + strand at 4268.453 kb on + strand at 4268.461 kb on - strand at 4268.558 kb on - strand, within MIT1002_03821 at 4268.590 kb on + strand, within MIT1002_03821 at 4268.707 kb on + strand, within MIT1002_03821 at 4268.707 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.906 kb on + strand, within MIT1002_03821 at 4268.937 kb on - strand, within MIT1002_03821 at 4268.954 kb on + strand, within MIT1002_03821 at 4268.989 kb on - strand, within MIT1002_03821 at 4268.989 kb on - strand, within MIT1002_03821 at 4268.994 kb on + strand, within MIT1002_03821 at 4269.001 kb on - strand, within MIT1002_03821 at 4269.013 kb on + strand, within MIT1002_03821 at 4269.027 kb on - strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.140 kb on + strand, within MIT1002_03821 at 4269.148 kb on - strand, within MIT1002_03821 at 4269.148 kb on - strand, within MIT1002_03821 at 4269.179 kb on + strand, within MIT1002_03821 at 4269.195 kb on - strand, within MIT1002_03821 at 4269.362 kb on + strand, within MIT1002_03821 at 4269.375 kb on + strand, within MIT1002_03821 at 4269.446 kb on + strand, within MIT1002_03821 at 4269.454 kb on - strand, within MIT1002_03821 at 4269.472 kb on + strand, within MIT1002_03821 at 4269.501 kb on + strand, within MIT1002_03821 at 4269.521 kb on - strand, within MIT1002_03821 at 4269.551 kb on - strand, within MIT1002_03821 at 4269.551 kb on - strand, within MIT1002_03821 at 4269.586 kb on - strand at 4269.634 kb on + strand at 4269.664 kb on - strand at 4269.712 kb on + strand at 4269.775 kb on - strand at 4269.821 kb on + strand at 4269.841 kb on - strand at 4269.841 kb on - strand at 4269.853 kb on + strand at 4269.897 kb on - strand at 4269.931 kb on + strand at 4269.985 kb on + strand at 4269.993 kb on - strand at 4270.031 kb on + strand, within MIT1002_03822 at 4270.031 kb on + strand, within MIT1002_03822 at 4270.043 kb on + strand, within MIT1002_03822 at 4270.049 kb on + strand, within MIT1002_03822 at 4270.063 kb on - strand, within MIT1002_03822 at 4270.115 kb on + strand, within MIT1002_03822 at 4270.131 kb on - strand, within MIT1002_03822 at 4270.143 kb on + strand, within MIT1002_03822 at 4270.305 kb on + strand, within MIT1002_03822 at 4270.391 kb on + strand, within MIT1002_03822 at 4270.393 kb on - strand, within MIT1002_03822 at 4270.451 kb on + strand, within MIT1002_03822 at 4270.490 kb on - strand, within MIT1002_03822 at 4270.500 kb on + strand, within MIT1002_03822 at 4270.606 kb on - strand, within MIT1002_03822 at 4270.674 kb on - strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.714 kb on + strand, within MIT1002_03822 at 4270.714 kb on + strand, within MIT1002_03822
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3 remove 4,267,433 + -0.6 4,267,438 + -1.0 4,267,441 - +1.4 4,267,538 - -0.6 4,267,560 - -1.1 4,267,582 + +0.8 4,267,590 - -1.5 4,267,590 - -0.9 4,267,590 - +1.0 4,267,638 + -1.4 4,267,657 - +0.2 4,267,678 - MIT1002_03820 0.11 +0.4 4,267,848 - MIT1002_03820 0.32 +0.1 4,267,874 + MIT1002_03820 0.35 -0.6 4,267,909 + MIT1002_03820 0.40 +0.2 4,267,917 - MIT1002_03820 0.41 -0.7 4,267,917 - MIT1002_03820 0.41 +0.3 4,267,918 - MIT1002_03820 0.41 +0.1 4,267,918 - MIT1002_03820 0.41 -2.6 4,268,037 - MIT1002_03820 0.56 +0.4 4,268,070 - MIT1002_03820 0.60 +1.6 4,268,102 + MIT1002_03820 0.64 +0.1 4,268,141 - MIT1002_03820 0.69 +0.6 4,268,193 + MIT1002_03820 0.75 +0.6 4,268,201 - MIT1002_03820 0.76 -0.5 4,268,247 + MIT1002_03820 0.82 +0.8 4,268,276 + MIT1002_03820 0.85 -1.0 4,268,283 + MIT1002_03820 0.86 +0.2 4,268,376 + -1.1 4,268,382 - +0.6 4,268,382 - -1.9 4,268,388 + +0.0 4,268,453 + +0.8 4,268,453 + -1.4 4,268,461 - -1.3 4,268,558 - MIT1002_03821 0.12 -1.3 4,268,590 + MIT1002_03821 0.15 +0.6 4,268,707 + MIT1002_03821 0.24 +0.3 4,268,707 + MIT1002_03821 0.24 -0.2 4,268,891 + MIT1002_03821 0.38 +1.1 4,268,891 + MIT1002_03821 0.38 -0.4 4,268,891 + MIT1002_03821 0.38 -0.3 4,268,891 + MIT1002_03821 0.38 +0.7 4,268,891 + MIT1002_03821 0.38 -1.1 4,268,891 + MIT1002_03821 0.38 +0.5 4,268,899 - MIT1002_03821 0.38 +1.1 4,268,899 - MIT1002_03821 0.38 -2.0 4,268,899 - MIT1002_03821 0.38 +0.2 4,268,899 - MIT1002_03821 0.38 +1.2 4,268,899 - MIT1002_03821 0.38 -0.6 4,268,899 - MIT1002_03821 0.38 -0.1 4,268,899 - MIT1002_03821 0.38 -0.5 4,268,899 - MIT1002_03821 0.38 -0.1 4,268,899 - MIT1002_03821 0.38 +0.1 4,268,899 - MIT1002_03821 0.38 -0.5 4,268,899 - MIT1002_03821 0.38 +0.3 4,268,906 + MIT1002_03821 0.39 -0.5 4,268,937 - MIT1002_03821 0.41 +0.6 4,268,954 + MIT1002_03821 0.42 -0.9 4,268,989 - MIT1002_03821 0.45 +0.2 4,268,989 - MIT1002_03821 0.45 -0.6 4,268,994 + MIT1002_03821 0.45 -0.2 4,269,001 - MIT1002_03821 0.46 -0.3 4,269,013 + MIT1002_03821 0.47 +0.6 4,269,027 - MIT1002_03821 0.48 -0.1 4,269,042 + MIT1002_03821 0.49 -1.6 4,269,042 + MIT1002_03821 0.49 -0.4 4,269,042 + MIT1002_03821 0.49 +0.2 4,269,042 + MIT1002_03821 0.49 -0.5 4,269,042 + MIT1002_03821 0.49 +1.3 4,269,042 + MIT1002_03821 0.49 -0.5 4,269,042 + MIT1002_03821 0.49 -0.9 4,269,042 + MIT1002_03821 0.49 -0.3 4,269,042 + MIT1002_03821 0.49 -1.9 4,269,050 - MIT1002_03821 0.50 +0.8 4,269,050 - MIT1002_03821 0.50 -0.9 4,269,050 - MIT1002_03821 0.50 -0.4 4,269,140 + MIT1002_03821 0.56 -0.1 4,269,148 - MIT1002_03821 0.57 -2.1 4,269,148 - MIT1002_03821 0.57 +0.3 4,269,179 + MIT1002_03821 0.59 -0.3 4,269,195 - MIT1002_03821 0.60 -0.4 4,269,362 + MIT1002_03821 0.73 -0.8 4,269,375 + MIT1002_03821 0.74 +0.7 4,269,446 + MIT1002_03821 0.79 +0.3 4,269,454 - MIT1002_03821 0.80 +1.1 4,269,472 + MIT1002_03821 0.81 -0.6 4,269,501 + MIT1002_03821 0.84 -0.5 4,269,521 - MIT1002_03821 0.85 -0.7 4,269,551 - MIT1002_03821 0.87 -0.1 4,269,551 - MIT1002_03821 0.87 +0.9 4,269,586 - +0.6 4,269,634 + +0.4 4,269,664 - +1.3 4,269,712 + +1.4 4,269,775 - +0.4 4,269,821 + -1.7 4,269,841 - +1.2 4,269,841 - +0.8 4,269,853 + +0.1 4,269,897 - -0.2 4,269,931 + -1.2 4,269,985 + -1.2 4,269,993 - -1.0 4,270,031 + MIT1002_03822 0.12 -1.0 4,270,031 + MIT1002_03822 0.12 +0.9 4,270,043 + MIT1002_03822 0.12 +0.7 4,270,049 + MIT1002_03822 0.13 +0.1 4,270,063 - MIT1002_03822 0.14 +1.4 4,270,115 + MIT1002_03822 0.17 +1.4 4,270,131 - MIT1002_03822 0.18 +1.6 4,270,143 + MIT1002_03822 0.19 -1.0 4,270,305 + MIT1002_03822 0.29 +0.5 4,270,391 + MIT1002_03822 0.35 +0.5 4,270,393 - MIT1002_03822 0.35 -0.6 4,270,451 + MIT1002_03822 0.38 +0.1 4,270,490 - MIT1002_03822 0.41 -2.2 4,270,500 + MIT1002_03822 0.41 +0.2 4,270,606 - MIT1002_03822 0.48 +0.1 4,270,674 - MIT1002_03822 0.53 -0.8 4,270,688 + MIT1002_03822 0.53 +0.8 4,270,688 + MIT1002_03822 0.53 -0.8 4,270,688 + MIT1002_03822 0.53 -0.9 4,270,696 - MIT1002_03822 0.54 -0.3 4,270,696 - MIT1002_03822 0.54 -0.4 4,270,696 - MIT1002_03822 0.54 +1.4 4,270,696 - MIT1002_03822 0.54 -0.8 4,270,714 + MIT1002_03822 0.55 +0.7 4,270,714 + MIT1002_03822 0.55 +0.7
Or see this region's nucleotide sequence