Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03659

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
4,091,857	+				+1.1
4,091,874	-				-1.4
4,092,018	+		MIT1002_03657	0.24	-1.1
4,092,026	-		MIT1002_03657	0.27	-0.7
4,092,026	-		MIT1002_03657	0.27	+0.3
4,092,036	-		MIT1002_03657	0.30	+0.1
4,092,091	-		MIT1002_03657	0.46	-0.3
4,092,101	-		MIT1002_03657	0.49	-0.4
4,092,182	+		MIT1002_03657	0.72	+0.0
4,092,212	+		MIT1002_03657	0.81	-0.3
4,092,299	-				-3.4
4,092,299	-				-1.6
4,092,357	-		MIT1002_03658	0.16	-3.0
4,092,357	-		MIT1002_03658	0.16	-0.8
4,092,364	+		MIT1002_03658	0.18	-3.1
4,092,520	+		MIT1002_03658	0.53	-1.6
4,092,520	+		MIT1002_03658	0.53	-1.6
4,092,569	+		MIT1002_03658	0.64	-2.2
4,092,588	-		MIT1002_03658	0.68	+1.2
4,092,589	+		MIT1002_03658	0.68	-2.0
4,092,589	+		MIT1002_03658	0.68	-1.9
4,092,605	+		MIT1002_03658	0.72	+0.7
4,092,615	+		MIT1002_03658	0.74	-0.2
4,092,807	+				-0.3
4,092,815	-				+1.1
4,092,857	+				+0.3
4,092,885	-				-0.3
4,092,920	+				-0.1
4,092,920	+				-2.3
4,092,965	-		MIT1002_03659	0.11	+0.0
4,093,075	+		MIT1002_03659	0.19	-0.4
4,093,083	-		MIT1002_03659	0.19	+0.3
4,093,083	-		MIT1002_03659	0.19	-0.6
4,093,083	-		MIT1002_03659	0.19	-0.3
4,093,088	-		MIT1002_03659	0.20	-0.8
4,093,090	+		MIT1002_03659	0.20	-2.4
4,093,098	-		MIT1002_03659	0.21	+0.2
4,093,098	-		MIT1002_03659	0.21	+0.1
4,093,100	-		MIT1002_03659	0.21	-0.0
4,093,132	+		MIT1002_03659	0.23	-0.2
4,093,251	+		MIT1002_03659	0.32	+0.0
4,093,261	+		MIT1002_03659	0.33	-0.5
4,093,261	+		MIT1002_03659	0.33	+0.2
4,093,269	-		MIT1002_03659	0.33	-1.4
4,093,269	-		MIT1002_03659	0.33	+1.1
4,093,269	-		MIT1002_03659	0.33	+0.1
4,093,269	-		MIT1002_03659	0.33	+0.6
4,093,272	+		MIT1002_03659	0.34	-2.4
4,093,279	+		MIT1002_03659	0.34	+0.5
4,093,289	+		MIT1002_03659	0.35	-0.5
4,093,289	+		MIT1002_03659	0.35	+0.3
4,093,304	-		MIT1002_03659	0.36	-0.4
4,093,331	-		MIT1002_03659	0.38	+1.2
4,093,397	+		MIT1002_03659	0.43	+1.1
4,093,405	-		MIT1002_03659	0.44	-0.6
4,093,593	-		MIT1002_03659	0.58	-2.0
4,093,777	+		MIT1002_03659	0.72	-0.0
4,093,879	+		MIT1002_03659	0.79	+0.9
4,094,208	-				+0.1
4,094,352	+		MIT1002_03660	0.24	+0.3
4,094,360	+		MIT1002_03660	0.26	+1.5
4,094,385	-		MIT1002_03660	0.31	-1.8
4,094,385	-		MIT1002_03660	0.31	-0.6
4,094,404	+		MIT1002_03660	0.35	-0.3
4,094,412	-		MIT1002_03660	0.36	-0.2
4,094,459	-		MIT1002_03660	0.46	+1.4
4,094,479	+		MIT1002_03660	0.50	-1.8
4,094,561	+		MIT1002_03660	0.67	-0.6
4,094,582	+		MIT1002_03660	0.72	-0.3
4,094,600	-		MIT1002_03660	0.75	-1.0
4,094,666	-		MIT1002_03660	0.89	+0.1
4,094,703	+				+0.4
4,094,721	-				+0.4
4,094,744	-				+0.1
4,094,917	-				+0.9
4,094,990	-				+1.3
4,095,024	+				+0.9
4,095,037	-				+0.3
4,095,038	+				-2.2
4,095,079	+				-1.3
4,095,105	+				+0.3
4,095,112	+				+2.2
4,095,130	-		MIT1002_03661	0.13	-0.4
4,095,130	-		MIT1002_03661	0.13	+0.1
4,095,145	+		MIT1002_03661	0.16	+1.2
4,095,153	-		MIT1002_03661	0.17	+0.2