Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03157

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
3,519,565	+		MIT1002_03156	0.41	-0.2
3,519,577	+		MIT1002_03156	0.42	-0.4
3,519,622	+		MIT1002_03156	0.45	-0.6
3,519,649	+		MIT1002_03156	0.47	+0.3
3,519,649	+		MIT1002_03156	0.47	+0.2
3,519,739	-		MIT1002_03156	0.54	+0.6
3,519,746	-		MIT1002_03156	0.54	-0.4
3,519,801	-		MIT1002_03156	0.59	-1.5
3,519,874	+		MIT1002_03156	0.64	-0.2
3,519,935	-		MIT1002_03156	0.69	-0.7
3,519,949	+		MIT1002_03156	0.70	-2.1
3,519,950	+		MIT1002_03156	0.70	+1.2
3,519,957	-		MIT1002_03156	0.70	+0.1
3,519,958	-		MIT1002_03156	0.70	-0.1
3,519,970	+		MIT1002_03156	0.71	-1.3
3,519,973	-		MIT1002_03156	0.72	+0.3
3,519,977	+		MIT1002_03156	0.72	-0.0
3,519,978	-		MIT1002_03156	0.72	+0.8
3,519,978	-		MIT1002_03156	0.72	+0.3
3,519,996	+		MIT1002_03156	0.73	+0.5
3,520,052	-		MIT1002_03156	0.78	-0.6
3,520,055	-		MIT1002_03156	0.78	+0.5
3,520,082	+		MIT1002_03156	0.80	-0.4
3,520,089	+		MIT1002_03156	0.80	-1.4
3,520,151	+		MIT1002_03156	0.85	+1.1
3,520,174	+		MIT1002_03156	0.87	-0.7
3,520,193	-		MIT1002_03156	0.88	-1.1
3,520,220	-				-0.6
3,520,266	+				-0.7
3,520,350	-				-0.0
3,520,364	+				+0.7
3,520,494	+				+0.2
3,520,512	-				+0.3
3,520,622	+				-1.5
3,520,622	+				+1.6
3,520,622	+				+0.4
3,520,630	-				-1.1
3,520,630	-				-1.1
3,520,630	-				+1.4
3,520,630	-				+0.5
3,520,692	+		MIT1002_03157	0.12	-0.9
3,520,709	-		MIT1002_03157	0.13	+2.8
3,520,810	-		MIT1002_03157	0.22	-0.8
3,520,816	+		MIT1002_03157	0.23	+0.2
3,520,824	-		MIT1002_03157	0.24	+0.2
3,520,824	-		MIT1002_03157	0.24	-1.4
3,520,824	-		MIT1002_03157	0.24	+0.6
3,520,834	-		MIT1002_03157	0.25	+0.9
3,520,861	+		MIT1002_03157	0.27	+0.4
3,520,863	+		MIT1002_03157	0.27	-0.1
3,520,972	+		MIT1002_03157	0.37	-0.7
3,520,990	+		MIT1002_03157	0.38	-0.7
3,521,021	+		MIT1002_03157	0.41	+0.1
3,521,021	+		MIT1002_03157	0.41	-1.3
3,521,021	+		MIT1002_03157	0.41	-2.1
3,521,021	+		MIT1002_03157	0.41	+0.2
3,521,021	+		MIT1002_03157	0.41	+1.1
3,521,021	+		MIT1002_03157	0.41	-3.9
3,521,029	-		MIT1002_03157	0.42	+0.1
3,521,029	-		MIT1002_03157	0.42	-3.0
3,521,029	-		MIT1002_03157	0.42	+0.6
3,521,073	+		MIT1002_03157	0.46	-0.7
3,521,132	+		MIT1002_03157	0.51	+0.5
3,521,204	+		MIT1002_03157	0.57	+0.5
3,521,204	+		MIT1002_03157	0.57	+0.4
3,521,204	+		MIT1002_03157	0.57	-0.7
3,521,212	-		MIT1002_03157	0.58	+0.3
3,521,212	-		MIT1002_03157	0.58	+0.1
3,521,233	-		MIT1002_03157	0.60	-0.6
3,521,294	+		MIT1002_03157	0.66	-1.2
3,521,294	+		MIT1002_03157	0.66	-0.0
3,521,357	+		MIT1002_03157	0.71	+0.0
3,521,389	+		MIT1002_03157	0.74	-0.3
3,521,398	-		MIT1002_03157	0.75	+0.7
3,521,425	-		MIT1002_03157	0.77	+1.3
3,521,473	+		MIT1002_03157	0.81	-0.1
3,521,473	+		MIT1002_03157	0.81	-1.2
3,521,617	-				+0.5
3,521,617	-				-0.3
3,521,677	-				-0.9
3,521,692	-				-1.5
3,521,692	-				-1.0
3,521,704	-				-0.2
3,521,704	-				+1.6
3,521,704	-				-0.5
3,521,751	-				+0.3
3,521,767	+				+1.1
3,521,880	+		MIT1002_03158	0.22	+0.4
3,521,894	+		MIT1002_03158	0.25	-0.9
3,521,902	-		MIT1002_03158	0.27	-1.3
3,522,021	+		MIT1002_03158	0.54	-2.7
3,522,112	-		MIT1002_03158	0.74	-0.2
3,522,139	-		MIT1002_03158	0.80	+0.4
3,522,151	-		MIT1002_03158	0.83	+1.2
3,522,242	-				-0.8
3,522,313	-				+0.4
3,522,364	+				-0.1
3,522,372	-				-0.3
3,522,396	+				-0.2
3,522,396	+				+0.1
3,522,474	+				+1.1
3,522,484	-				+0.7
3,522,489	-				+0.3
3,522,504	+				+0.2
3,522,589	+				-0.3
3,522,611	+		MIT1002_03159	0.10	+0.5
3,522,619	-		MIT1002_03159	0.10	+0.4
3,522,653	+		MIT1002_03159	0.12	+1.7
3,522,653	+		MIT1002_03159	0.12	+0.2
3,522,661	-		MIT1002_03159	0.13	-0.7
3,522,672	-		MIT1002_03159	0.13	-1.5
3,522,677	+		MIT1002_03159	0.14	-0.3
3,522,677	+		MIT1002_03159	0.14	+0.2
3,522,677	+		MIT1002_03159	0.14	-0.1
3,522,677	+		MIT1002_03159	0.14	-1.3
3,522,677	+		MIT1002_03159	0.14	+1.3