Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02922

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
3,246,647	+		MIT1002_02921	0.30	+0.3
3,246,735	-		MIT1002_02921	0.38	+1.4
3,246,748	+		MIT1002_02921	0.39	-0.2
3,246,757	-		MIT1002_02921	0.40	+0.4
3,246,757	-		MIT1002_02921	0.40	-0.7
3,246,762	-		MIT1002_02921	0.41	+0.2
3,246,764	-		MIT1002_02921	0.41	+0.2
3,246,791	+		MIT1002_02921	0.43	-2.3
3,246,835	+		MIT1002_02921	0.47	-0.8
3,246,843	+		MIT1002_02921	0.48	-0.2
3,246,848	+		MIT1002_02921	0.49	+0.4
3,246,852	-		MIT1002_02921	0.49	-0.0
3,246,921	+		MIT1002_02921	0.56	+0.3
3,246,956	-		MIT1002_02921	0.59	+0.7
3,247,016	+		MIT1002_02921	0.65	-0.9
3,247,016	+		MIT1002_02921	0.65	+0.0
3,247,016	+		MIT1002_02921	0.65	+0.5
3,247,016	+		MIT1002_02921	0.65	+0.0
3,247,016	+		MIT1002_02921	0.65	+0.6
3,247,024	-		MIT1002_02921	0.65	-1.2
3,247,024	-		MIT1002_02921	0.65	+0.0
3,247,024	-		MIT1002_02921	0.65	-0.1
3,247,024	-		MIT1002_02921	0.65	+1.6
3,247,024	-		MIT1002_02921	0.65	+0.2
3,247,051	+		MIT1002_02921	0.68	-0.1
3,247,061	-		MIT1002_02921	0.69	-0.1
3,247,149	-		MIT1002_02921	0.77	-1.0
3,247,182	-		MIT1002_02921	0.80	+0.4
3,247,182	-		MIT1002_02921	0.80	+0.8
3,247,238	+		MIT1002_02921	0.85	-2.6
3,247,271	+		MIT1002_02921	0.89	-0.8
3,247,271	+		MIT1002_02921	0.89	-2.1
3,247,279	-		MIT1002_02921	0.89	-0.5
3,247,279	-		MIT1002_02921	0.89	-1.0
3,247,388	-				-0.4
3,247,395	+				-0.5
3,247,402	+				-0.4
3,247,423	+				-0.1
3,247,423	+				+0.6
3,247,431	-				+0.8
3,247,431	-				+1.2
3,247,435	+				+0.8
3,247,443	-				-0.5
3,247,482	+				+0.0
3,247,482	+				+0.0
3,247,490	-				-0.4
3,247,512	-				+0.3
3,247,522	+				-0.4
3,247,564	+				-0.9
3,247,608	-				+0.9
3,247,719	-		MIT1002_02922	0.13	+0.0
3,247,743	+		MIT1002_02922	0.17	-0.2
3,247,757	-		MIT1002_02922	0.19	-1.1
3,247,813	+		MIT1002_02922	0.29	+0.8
3,247,813	+		MIT1002_02922	0.29	+0.2
3,247,813	+		MIT1002_02922	0.29	+2.0
3,247,813	+		MIT1002_02922	0.29	-1.3
3,247,813	+		MIT1002_02922	0.29	+0.3
3,247,829	+		MIT1002_02922	0.32	-0.7
3,247,829	+		MIT1002_02922	0.32	-0.2
3,247,898	+		MIT1002_02922	0.44	+0.9
3,247,906	-		MIT1002_02922	0.45	-1.3
3,247,906	-		MIT1002_02922	0.45	-0.3
3,247,946	+		MIT1002_02922	0.52	+0.0
3,247,981	-		MIT1002_02922	0.58	-0.4
3,247,981	-		MIT1002_02922	0.58	+1.0
3,247,988	-		MIT1002_02922	0.60	-1.5
3,248,094	+		MIT1002_02922	0.78	+0.3
3,248,097	-		MIT1002_02922	0.78	-1.2
3,248,127	+		MIT1002_02922	0.84	-0.6
3,248,135	-		MIT1002_02922	0.85	-2.8
3,248,220	+				+0.3
3,248,220	+				-2.1
3,248,227	-				+1.4
3,248,243	+				+0.1
3,248,273	+				-0.2
3,248,353	+				-1.7
3,248,353	+				+0.4
3,248,377	+				+0.9
3,248,377	+				-0.2
3,248,385	-				+0.3
3,248,385	-				+0.0
3,248,397	-				+0.0
3,248,457	-				+1.1
3,248,485	-		MIT1002_02923	0.13	-1.7
3,248,506	+		MIT1002_02923	0.17	-2.1
3,248,514	-		MIT1002_02923	0.18	+0.6
3,248,536	+		MIT1002_02923	0.21	+0.1
3,248,548	+		MIT1002_02923	0.23	-0.1
3,248,549	+		MIT1002_02923	0.23	+0.0
3,248,621	+		MIT1002_02923	0.34	+0.1
3,248,694	-		MIT1002_02923	0.45	-2.1
3,248,703	+		MIT1002_02923	0.47	+0.7
3,248,711	-		MIT1002_02923	0.48	-2.1
3,248,711	-		MIT1002_02923	0.48	-1.4
3,248,711	-		MIT1002_02923	0.48	-0.6
3,248,717	-		MIT1002_02923	0.49	+1.2
3,248,727	-		MIT1002_02923	0.50	+0.7
3,248,789	+		MIT1002_02923	0.60	+1.4
3,248,816	-		MIT1002_02923	0.64	+0.2
3,248,817	-		MIT1002_02923	0.64	-0.3
3,248,892	+		MIT1002_02923	0.75	+1.6
3,248,953	-		MIT1002_02923	0.84	-0.4
3,248,960	-		MIT1002_02923	0.85	+2.5
3,249,188	-				+0.5
3,249,194	-				+0.5