Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02388

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
2,662,036	-		MIT1002_02385	0.75	+0.9
2,662,047	+		MIT1002_02385	0.77	-1.5
2,662,079	+		MIT1002_02385	0.82	-0.6
2,662,087	-		MIT1002_02385	0.83	-0.2
2,662,122	+		MIT1002_02385	0.88	+0.2
2,662,166	-				+0.3
2,662,181	-				-0.6
2,662,203	-				+1.0
2,662,207	+				-1.7
2,662,208	-				-0.7
2,662,254	-				-0.3
2,662,262	+				-0.7
2,662,305	+				-1.0
2,662,319	+				+0.5
2,662,319	+				+0.5
2,662,494	+				-1.0
2,662,598	-		MIT1002_02386	0.50	+0.2
2,662,778	-		MIT1002_02387	0.31	-0.3
2,662,778	-		MIT1002_02387	0.31	-1.3
2,662,778	-		MIT1002_02387	0.31	-0.3
2,662,780	-		MIT1002_02387	0.32	-0.5
2,662,824	-		MIT1002_02387	0.55	-0.6
2,662,897	+				-1.4
2,662,931	+				+1.1
2,662,966	+				-0.1
2,663,019	-		MIT1002_02388	0.11	-0.1
2,663,037	-		MIT1002_02388	0.19	+0.5
2,663,039	-		MIT1002_02388	0.20	-0.9
2,663,063	+		MIT1002_02388	0.31	+0.0
2,663,063	+		MIT1002_02388	0.31	-0.0
2,663,063	+		MIT1002_02388	0.31	+1.3
2,663,071	-		MIT1002_02388	0.35	+0.2
2,663,071	-		MIT1002_02388	0.35	+0.4
2,663,089	-		MIT1002_02388	0.43	+0.2
2,663,120	+		MIT1002_02388	0.57	-0.3
2,663,144	+		MIT1002_02388	0.68	+0.5
2,663,152	-		MIT1002_02388	0.72	-1.3
2,663,195	+				-0.2
2,663,203	-				+0.8
2,663,283	+				-1.0
2,663,370	-				-1.0
2,663,384	+				-0.7
2,663,385	-				+0.2
2,663,389	+				+0.2
2,663,472	+				+0.6
2,663,575	-		MIT1002_02389	0.12	-1.4
2,663,580	-		MIT1002_02389	0.12	+0.3
2,663,829	+		MIT1002_02389	0.20	-1.2
2,663,829	+		MIT1002_02389	0.20	+0.9
2,663,837	-		MIT1002_02389	0.21	-0.1
2,663,837	-		MIT1002_02389	0.21	+1.2
2,663,881	+		MIT1002_02389	0.22	-2.3
2,663,881	+		MIT1002_02389	0.22	+0.1
2,663,889	-		MIT1002_02389	0.23	+0.1
2,663,889	-		MIT1002_02389	0.23	-0.8
2,663,917	-		MIT1002_02389	0.23	+0.5
2,664,003	+		MIT1002_02389	0.26	+0.1
2,664,016	-		MIT1002_02389	0.27	-0.8
2,664,142	+		MIT1002_02389	0.31	+1.1
2,664,145	-		MIT1002_02389	0.31	-1.5
2,664,145	-		MIT1002_02389	0.31	-0.8
2,664,155	+		MIT1002_02389	0.32	-0.7
2,664,155	+		MIT1002_02389	0.32	-0.5
2,664,155	+		MIT1002_02389	0.32	-0.1
2,664,163	-		MIT1002_02389	0.32	+1.3