Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01990

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
2,224,501	+		MIT1002_01989	0.24	+0.7
2,224,517	-		MIT1002_01989	0.25	+0.2
2,224,522	-		MIT1002_01989	0.26	-0.4
2,224,522	-		MIT1002_01989	0.26	+1.8
2,224,522	-		MIT1002_01989	0.26	+0.8
2,224,575	+		MIT1002_01989	0.30	-0.2
2,224,636	-		MIT1002_01989	0.36	+0.9
2,224,636	-		MIT1002_01989	0.36	+0.2
2,224,636	-		MIT1002_01989	0.36	+1.5
2,224,636	-		MIT1002_01989	0.36	+0.7
2,224,636	-		MIT1002_01989	0.36	+0.7
2,224,638	+		MIT1002_01989	0.36	+1.3
2,224,646	-		MIT1002_01989	0.37	+0.3
2,224,646	-		MIT1002_01989	0.37	+0.5
2,224,646	-		MIT1002_01989	0.37	+0.2
2,224,700	+		MIT1002_01989	0.42	-0.8
2,224,700	+		MIT1002_01989	0.42	+1.1
2,224,701	-		MIT1002_01989	0.42	+0.4
2,224,708	-		MIT1002_01989	0.43	-0.4
2,224,775	+		MIT1002_01989	0.49	+0.1
2,224,775	+		MIT1002_01989	0.49	+1.3
2,224,817	-		MIT1002_01989	0.53	+0.6
2,224,822	-		MIT1002_01989	0.53	+0.1
2,224,915	+		MIT1002_01989	0.62	-0.4
2,224,927	+		MIT1002_01989	0.63	+0.9
2,224,960	+		MIT1002_01989	0.66	-1.3
2,224,976	-		MIT1002_01989	0.68	-4.4
2,225,002	+		MIT1002_01989	0.70	+0.6
2,225,052	-		MIT1002_01989	0.75	+0.8
2,225,193	+		MIT1002_01989	0.88	-0.9
2,225,193	+		MIT1002_01989	0.88	-0.0
2,225,193	+		MIT1002_01989	0.88	-0.2
2,225,193	+		MIT1002_01989	0.88	-2.5
2,225,201	-		MIT1002_01989	0.89	-0.5
2,225,232	-				+0.0
2,225,251	+				+1.3
2,225,267	+				-1.8
2,225,277	-				-0.9
2,225,291	+				+2.1
2,225,306	+				-0.0
2,225,374	+				-0.5
2,225,430	+		MIT1002_01990	0.13	-1.3
2,225,482	-		MIT1002_01990	0.19	+3.0
2,225,519	+		MIT1002_01990	0.24	+0.6
2,225,527	-		MIT1002_01990	0.25	+0.8
2,225,584	+		MIT1002_01990	0.32	-0.3
2,225,592	-		MIT1002_01990	0.32	-2.8
2,225,592	-		MIT1002_01990	0.32	+0.7
2,225,592	-		MIT1002_01990	0.32	-1.9
2,225,592	-		MIT1002_01990	0.32	+1.5
2,225,609	+		MIT1002_01990	0.35	+0.2
2,225,623	+		MIT1002_01990	0.36	+0.1
2,225,658	+		MIT1002_01990	0.40	+1.0
2,225,658	+		MIT1002_01990	0.40	+1.1
2,225,806	+		MIT1002_01990	0.58	-0.5
2,225,857	-		MIT1002_01990	0.64	-0.8
2,225,879	-		MIT1002_01990	0.67	+0.1
2,225,897	-		MIT1002_01990	0.69	+0.1
2,226,168	+				-0.2
2,226,178	+				-0.1
2,226,178	-				+0.1
2,226,254	-				+1.1
2,226,292	+				-0.8
2,226,292	+				+0.6
2,226,310	-				-1.0
2,226,360	+				+0.1
2,226,368	-		MIT1002_01991	0.11	-2.8
2,226,368	-		MIT1002_01991	0.11	-4.3
2,226,383	-		MIT1002_01991	0.12	+1.1
2,226,429	-		MIT1002_01991	0.17	+0.2
2,226,441	+		MIT1002_01991	0.18	-1.6
2,226,449	-		MIT1002_01991	0.19	+0.8
2,226,449	-		MIT1002_01991	0.19	-0.2
2,226,449	-		MIT1002_01991	0.19	-0.1
2,226,449	-		MIT1002_01991	0.19	+0.6
2,226,476	-		MIT1002_01991	0.21	-0.5
2,226,484	+		MIT1002_01991	0.22	+2.0
2,226,485	+		MIT1002_01991	0.22	+1.3
2,226,495	+		MIT1002_01991	0.23	+0.2
2,226,495	+		MIT1002_01991	0.23	+0.1
2,226,503	-		MIT1002_01991	0.24	-0.3
2,226,517	-		MIT1002_01991	0.25	+1.7
2,226,638	-		MIT1002_01991	0.37	+0.2
2,226,647	-		MIT1002_01991	0.38	+0.2
2,226,784	+		MIT1002_01991	0.52	-0.4
2,226,855	-		MIT1002_01991	0.59	+0.2
2,226,914	+		MIT1002_01991	0.65	+1.0
2,226,983	+		MIT1002_01991	0.72	-0.1
2,227,023	-		MIT1002_01991	0.76	-0.1
2,227,055	-		MIT1002_01991	0.79	-0.5
2,227,057	+		MIT1002_01991	0.79	+0.6
2,227,057	+		MIT1002_01991	0.79	-0.1
2,227,062	+		MIT1002_01991	0.80	-0.6
2,227,065	-		MIT1002_01991	0.80	-0.4
2,227,065	-		MIT1002_01991	0.80	-0.1
2,227,065	-		MIT1002_01991	0.80	-1.4
2,227,070	-		MIT1002_01991	0.80	-0.0
2,227,136	-		MIT1002_01991	0.87	+0.5
2,227,136	-		MIT1002_01991	0.87	+0.5