Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01734

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01732 and MIT1002_01733 are separated by 9 nucleotidesMIT1002_01733 and MIT1002_01734 are separated by 199 nucleotidesMIT1002_01734 and MIT1002_01735 are separated by 80 nucleotides MIT1002_01732: MIT1002_01732 - Malonyl CoA-acyl carrier protein transacylase, at 1,924,864 to 1,925,793 _01732 MIT1002_01733: MIT1002_01733 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,925,803 to 1,926,543 _01733 MIT1002_01734: MIT1002_01734 - Acyl carrier protein, at 1,926,743 to 1,926,982 _01734 MIT1002_01735: MIT1002_01735 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,927,063 to 1,928,301 _01735 Position (kb) 1926 1927Strain fitness (log2 ratio) -1 0 1at 1925.754 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
remove
1,925,754 + -1.4

Or see this region's nucleotide sequence